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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180403 (102 seq.)
>W1710808942
LKDZ01000038
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
92454
92538
+
Leu
GAG
[ENA]
¡û
>W1710821657
LKTU01000048
Betaproteobacteria
Variovorax paradoxus [LKTU]
25350
25266
-
Leu
GAG
[ENA]
¡û
>W1710821683
LKTV01000029
Betaproteobacteria
Variovorax paradoxus [LKTV]
52423
52507
+
Leu
GAG
[ENA]
¡û
>W1710821732
LKTW01000032
Betaproteobacteria
Variovorax paradoxus [LKTW]
52401
52485
+
Leu
GAG
[ENA]
¡û
>W1710821787
LKTX01000022
Betaproteobacteria
Variovorax paradoxus [LKTX]
52415
52499
+
Leu
GAG
[ENA]
¡û
>W1710821833
LKTY01000022
Betaproteobacteria
Variovorax paradoxus [LKTY]
52393
52477
+
Leu
GAG
[ENA]
¡û
>W1710821888
LKTZ01000026
Betaproteobacteria
Variovorax paradoxus [LKTZ]
52379
52463
+
Leu
GAG
[ENA]
¡û
>W1710860149
LMCQ01000022
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
22085
22169
+
Leu
GAG
[ENA]
¡û
>W1710861743
LMDW01000001
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
1089242
1089326
+
Leu
GAG
[ENA]
¡û
>W1710862497
LMEK01000024
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
158225
158141
-
Leu
GAG
[ENA]
¡û
>W1710863082
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
679830
679914
+
Leu
GAG
[ENA]
¡û
>W1711074194
LSJH01000635
Betaproteobacteria
Xylophilus ampelinus [LSJH]
1828
1912
+
Leu
GAG
[ENA]
¡û
>W1711123838
LUJJ01000030
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
81710
81626
-
Leu
GAG
[ENA]
¡û
>W1711143347
LVHG01000027
Betaproteobacteria
Variovorax paradoxus [LVHG]
121303
121387
+
Leu
GAG
[ENA]
¡û
>W1711259911
LYVQ01000067
Betaproteobacteria
Pelomonas sp. KK5 [LYVQ]
22789
22705
-
Leu
GAG
[ENA]
¡û
>W1711386494
MEFM01000015
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
101257
101173
-
Leu
GAG
[ENA]
¡û
>W1711387480
MEGR01000018
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
37324
37240
-
Leu
GAG
[ENA]
¡û
>W1711506640
MKWO01000050
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
105884
105800
-
Leu
GAG
[ENA]
¡û
>C171091653
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
3730604
3730520
-
Leu
GAG
-
¡û
>W131174628
ARIP01000056
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
20247
20331
+
Leu
GAG
[ENA]
¡û
>W131180361
ARNA01000050
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
1088884
1088800
-
Leu
GAG
[ENA]
¡û
>WENV180016720
FSVW01000251
[FSVW] metagenome; soil
2169
2085
-
Leu
GAG
[ENA]
¢þ
>WENV180016814
FSVW01003079
[FSVW] metagenome; soil
249
165
-
Leu
GAG
[ENA]
¢þ
>WENV180028843
FTJH01113330
[FTJH] metagenome; soil
348
432
+
Leu
GAG
[ENA]
¢þ
>WENV180028872
FTJH01232886
[FTJH] metagenome; soil
1194
1278
+
Leu
GAG
[ENA]
¢þ
>WENV180099589
NMRC01020089
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
353
269
-
Leu
GAG
[ENA]
¢þ
>WENV181324524
OFLF01000424
[OFLF] marine metagenome; melt pond
1669
1585
-
Leu
GAG
[ENA]
¢þ
>WENV181364803
OFPD01000739
[OFPD] sediment metagenome; Lake sediment
152
236
+
Leu
GAG
[ENA]
¢þ
>WENV181365494
OFPR01002322
[OFPR] sediment metagenome; Lake sediment
491
575
+
Leu
GAG
[ENA]
¢þ
>W141170108
AXWZ01000022
Betaproteobacteria
Variovorax sp. JGI 0001020-M05 [AXWZ]
2006
1922
-
Leu
GAG
[ENA]
¡û
>W141170124
AXXC01000008
Betaproteobacteria
Variovorax sp. JGI 0001014-H11 [AXXC]
11988
11904
-
Leu
GAG
[ENA]
¡û
>WENV183735112
PJUA01001032
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
6597
6513
-
Leu
GAG
[ENA]
¢þ
>WENV183735628
PJUB01000261
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
26239
26155
-
Leu
GAG
[ENA]
¢þ
>WENV183736264
PJUC01000352
[PJUC] soil metagenome; Soil enriched on filter paper
3243
3327
+
Leu
GAG
[ENA]
¢þ
>WENV183741532
PJUG01000048
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
111288
111372
+
Leu
GAG
[ENA]
¢þ
>WENV183741908
PJUH01000006
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
111288
111372
+
Leu
GAG
[ENA]
¢þ
>WENV183744384
PJUK01015148
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
361
445
+
Leu
GAG
[ENA]
¢þ
>WENV170559363
CXWL01120495
[CXWL] groundwater metagenome; biofilm material
2654
2570
-
Leu
GAG
[ENA]
¢þ
>WENV170707113
LNAP01012902
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5590
5506
-
Leu
GAG
[ENA]
¢þ
>WENV171003353
NNBT01005981
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
4940
4856
-
Leu
GAG
[ENA]
¢þ
>WENV171003629
NNBU01001074
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
4440
4356
-
Leu
GAG
[ENA]
¢þ
>WENV171003747
NNBV01000582
[NNBV] plant metagenome; symbiotic tissue sample KVS11
124859
124775
-
Leu
GAG
[ENA]
¢þ
>C181078491
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
4928420
4928336
-
Leu
GAG
-
¡û
>C181159405
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
1896761
1896677
-
Leu
GAG
-
¡û
>W141558070
JHVQ01000004
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
424613
424697
+
Leu
GAG
[ENA]
¡û
>W09119940
ACEE01000038
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
36592
36508
-
Leu
GAG
[ENA]
¡û
>C141002567
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
3823733
3823649
-
Leu
GAG
[Ensembl]
¡û
>C09111120
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
3701339
3701255
-
Leu
GAG
[Ensembl]
¡û
>W1910792833
MRCN01000011
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
80558
80474
-
Leu
GAG
[ENA]
¡û
>W1911496708
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4935873
4935789
-
Leu
GAG
[ENA]
¡û
>W1911647334
QAJK01000043
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
38885
38801
-
Leu
GAG
[ENA]
¡û
>W1911709220
QPIB01000009
Betaproteobacteria
Xenophilus sp. E41 [QPIB]
68357
68441
+
Leu
GAG
[ENA]
¡û
>W1911775310
QXMN01000006
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
59212
59128
-
Leu
GAG
[ENA]
¡û
>W1810072252
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
1158453
1158369
-
Leu
GAG
[ENA]
¡û
>W1810192708
PKMT01000001
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
1759506
1759590
+
Leu
GAG
[ENA]
¡û
>W1810486663
QAYA01000005
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
314322
314406
+
Leu
GAG
[ENA]
¡û
>W1810577539
QEOH01000017
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
169963
170047
+
Leu
GAG
[ENA]
¡û
>W1810672547
QJTM01000009
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
180372
180456
+
Leu
GAG
[ENA]
¡û
>W1810676115
QKLT01000010
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
180372
180456
+
Leu
GAG
[ENA]
¡û
>W1810682468
QKUE01000003
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
699104
699188
+
Leu
GAG
[ENA]
¡û
>SRA1014225
SRR023845.45359
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
8
92
+
Leu
GAG
[SRA]
>SRA1016032
SRR023846.317459
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
187
271
+
Leu
GAG
[SRA]
>SRA1016495
SRR023846.530639
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
56
140
+
Leu
GAG
[SRA]
>W1511352963
JROV01000452
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
6200
6116
-
Leu
GAG
[ENA]
¡û
>C11123602
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
4343008
4342924
-
Leu
GAG
[Ensembl]
¡û
>W1511508931
JXQQ01000034
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
23075
22991
-
Leu
GAG
[ENA]
¡û
>W1511555001
JZWI01000015
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
159203
159119
-
Leu
GAG
[ENA]
¡û
>C161073195
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
475898
475814
-
Leu
GAG
[Ensembl]
¡û
>W121084989
AKIW01000107
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
24037
23953
-
Leu
GAG
[ENA]
¡û
>W1610072157
BCUS01000043
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
19408
19324
-
Leu
GAG
[ENA]
¡û
>W1610072224
BCUT01000007
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
19678
19762
+
Leu
GAG
[ENA]
¡û
>W1610685619
LKTU01000048
Betaproteobacteria
Variovorax paradoxus [LKTU]
25350
25266
-
Leu
GAG
[ENA]
¡û
>W1610685645
LKTV01000029
Betaproteobacteria
Variovorax paradoxus [LKTV]
52423
52507
+
Leu
GAG
[ENA]
¡û
>W1610685694
LKTW01000032
Betaproteobacteria
Variovorax paradoxus [LKTW]
52401
52485
+
Leu
GAG
[ENA]
¡û
>W1610685749
LKTX01000022
Betaproteobacteria
Variovorax paradoxus [LKTX]
52415
52499
+
Leu
GAG
[ENA]
¡û
>W1610685795
LKTY01000022
Betaproteobacteria
Variovorax paradoxus [LKTY]
52393
52477
+
Leu
GAG
[ENA]
¡û
>W1610685850
LKTZ01000026
Betaproteobacteria
Variovorax paradoxus [LKTZ]
52379
52463
+
Leu
GAG
[ENA]
¡û
>W1610722495
LMCQ01000022
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
22085
22169
+
Leu
GAG
[ENA]
¡û
>W1610724089
LMDW01000001
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
1089242
1089326
+
Leu
GAG
[ENA]
¡û
>W1610724843
LMEK01000024
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
158225
158141
-
Leu
GAG
[ENA]
¡û
>W1610725428
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
679830
679914
+
Leu
GAG
[ENA]
¡û
>W1610913499
LSJH01000635
Betaproteobacteria
Xylophilus ampelinus [LSJH]
1828
1912
+
Leu
GAG
[ENA]
¡û
>W1610954355
LVHG01000027
Betaproteobacteria
Variovorax paradoxus [LVHG]
121303
121387
+
Leu
GAG
[ENA]
¡û
>W1710069359
BCUS01000043
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
19408
19324
-
Leu
GAG
[ENA]
¡û
>W1710069426
BCUT01000007
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
19678
19762
+
Leu
GAG
[ENA]
¡û
>W1710506190
FMUJ01000002
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
1247865
1247949
+
Leu
GAG
[ENA]
¡û
>W1710512936
FMZU01000001
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
321249
321333
+
Leu
GAG
[ENA]
¡û
>W1710517946
FNDR01000005
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
19915
19999
+
Leu
GAG
[ENA]
¡û
>W1710530043
FNOL01000017
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
72542
72458
-
Leu
GAG
[ENA]
¡û
>W1710531379
FNPM01000009
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
57447
57363
-
Leu
GAG
[ENA]
¡û
>W1710534040
FNRO01000011
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
39620
39704
+
Leu
GAG
[ENA]
¡û
>W1710538131
FNUI01000003
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
68818
68734
-
Leu
GAG
[ENA]
¡û
>W1710539545
FNVM01000003
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
68810
68726
-
Leu
GAG
[ENA]
¡û
>W1710542704
FNZJ01000002
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
146058
145974
-
Leu
GAG
[ENA]
¡û
>W1710545313
FOBJ01000012
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
222585
222669
+
Leu
GAG
[ENA]
¡û
>W1710554312
FOII01000014
Betaproteobacteria
Variovorax sp. OV084 [FOII]
85206
85290
+
Leu
GAG
[ENA]
¡û
>W1710557132
FOKS01000004
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
432037
432121
+
Leu
GAG
[ENA]
¡û
>W1710558143
FOLP01000002
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
146058
145974
-
Leu
GAG
[ENA]
¡û
>W1710562242
FOOV01000002
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
432037
432121
+
Leu
GAG
[ENA]
¡û
>W1710571855
FOWG01000001
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
25195
25111
-
Leu
GAG
[ENA]
¡û
>W1710572124
FOWL01000005
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
356763
356847
+
Leu
GAG
[ENA]
¡û
>W1710573271
FOXJ01000001
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
480434
480518
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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