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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181746 (19 seq.)
>W1711423196
MICM01000677
Thermodesulfobacteriota
Syntrophobacterales bacterium RIFOXYC2_FULL_60_23 [MICM]
558
482
-
Pro
GGG
[ENA]
¡û
>W131104345
APCF01000001
Thermodesulfobacteriota
Desulfobulbus sp. oral taxon 041 oral taxon 041 str. Dsb1-5 [APCF]
14568
14644
+
Pro
GGG
[ENA]
¡û
>W131110532
APKC01000003
Thermodesulfobacteriota
Desulfobulbus sp. oral taxon 041 oral taxon 041 str. Dsb4 [APKC]
15773
15849
+
Pro
GGG
[ENA]
¡û
>W131224547
AUCW01000036
Thermodesulfobacteriota
Desulfogranum mediterraneum DSM 13871 [AUCW]
18512
18588
+
Pro
GGG
[ENA]
¡û
>W1711584206
MNYF01000225
Unclassified
Deltaproteobacteria bacterium CG2_30_43_15 [MNYF]
3589
3513
-
Pro
GGG
[ENA]
¡û
>WENV180242033
OBDI01060161
[OBDI] metagenome; diffuse fluid
162
86
-
Pro
GGG
[ENA]
¡û
>WENV180353961
OBLQ011236883
[OBLQ] soil metagenome; soil
149
73
-
Pro
GGG
[ENA]
¡û
>WENV181293897
OFHG01038876
[OFHG] soil metagenome; Clay
189
265
+
Pro
GGG
[ENA]
¡û
>WENV183717449
PDWJ01000939
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
16448
16524
+
Pro
GGG
[ENA]
¡û
>WENV183717528
PDWJ01001067
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
12618
12694
+
Pro
GGG
[ENA]
¡û
>WENV170661743
JXWV01105949
[JXWV] soil metagenome; rice field; organic FYM Plot
397
321
-
Pro
GGG
[ENA]
¡û
>WENV170686283
LFRM01137440
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1591
1515
-
Pro
GGG
[ENA]
¡û
>WENV170688707
LFRM01258660
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1102
1026
-
Pro
GGG
[ENA]
¡û
>C181050141
CP021255
Thermodesulfobacteriota
Desulfobulbus oralis HOT041/ORNL [CP021255]
2611280
2611356
+
Pro
GGG
-
¡û
>W141562330
JHZB01000047
Thermodesulfobacteriota
Desulfobulbus elongatus DSM 2908 [JHZB]
3826
3750
-
Pro
GGG
[ENA]
¡û
>W2110494644
JAFFQC010000005
Thermodesulfobacteriota
Desulfobulbus alkaliphilus DSM 24258 [JAFFQC]
14974
14898
-
Pro
GGG
[ENA]
¡û
>W2110494705
JAFFQD010000024
Thermodesulfobacteriota
Desulfobulbus marinus DSM 2058 [JAFFQD]
75954
76030
+
Pro
GGG
[ENA]
¡û
>C211095667
CP054140
Thermodesulfobacteriota
Desulfobulbus oligotrophicus Prop6 [CP054140]
2475503
2475579
+
Pro
GGG
-
¡û
>C11107179
CP002364
Thermodesulfobacteriota
Desulfobulbus propionicus DSM 2032 [CP002364]
1629630
1629706
+
Pro
GGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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