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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182614 (38 seq.)
>A171001469
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
755292
755219
-
Val
TAC
-
¡û
>A171002998
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
1010167
1010241
+
Val
TAC
-
¡û
>A171004508
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
23253
23328
+
Val
TAC
-
¡û
>A171004608
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
883642
883567
-
Val
TAC
-
¡û
>A171004622
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1504228
1504302
+
Val
TAC
-
¡û
>A171004799
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
2740508
2740434
-
Val
TAC
-
¡û
>A171004831
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
2810451
2810525
+
Val
TAC
-
¡û
>A171004886
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3300869
3300943
+
Val
TAC
-
¡û
>A171005204
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
2652925
2652999
+
Val
TAC
-
¡û
>A171005249
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1488718
1488792
+
Val
TAC
-
¡û
>A171005330
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3260470
3260397
-
Val
TAC
-
¡û
>A171005444
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
888932
888858
-
Val
TAC
-
¡û
>A171005501
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
878973
878899
-
Val
TAC
-
¡û
>A171006803
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1969430
1969506
+
Val
TAC
-
¡û
>WENV170006237
AMWB02009632
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
74
1
-
Val
TAC
[ENA]
¢þ
>WENV170008174
AMZC01003635
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
144
69
-
Val
TAC
[ENA]
¢þ
>At1383
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
2228030
2228103
+
Val
TAC
[Ensembl]
¡û
>WENV170686600
LFRM01153609
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
81562
81487
-
Val
TAC
[ENA]
¢þ
>WENV170784244
MCHG01000218
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
511
586
+
Val
TAC
[ENA]
¢þ
>WENV170784355
MCHG01001058
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
3692
3617
-
Val
TAC
[ENA]
¢þ
>W1910228313
FNMU01000002
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
353006
353082
+
Val
TAC
[ENA]
¡û
>W1910569480
JJOW01000003
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
26837
26763
-
Val
TAC
[ENA]
¡û
>W1910569547
JJOX01000060
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
66912
66838
-
Val
TAC
[ENA]
¡û
>W1910569590
JJOY01000006
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
117474
117548
+
Val
TAC
[ENA]
¡û
>W1910569646
JJOZ01000020
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
66912
66838
-
Val
TAC
[ENA]
¡û
>W1910571611
JJQL01000095
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
61340
61266
-
Val
TAC
[ENA]
¡û
>W1910572280
JJQY01000120
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
29523
29597
+
Val
TAC
[ENA]
¡û
>W1910582958
JWTK01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
225034
225110
+
Val
TAC
[ENA]
¡û
>W1910672546
MCNQ01000008
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
258192
258268
+
Val
TAC
[ENA]
¡û
>W1910694810
MDTP02000214
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
1571
1646
+
Val
TAC
[ENA]
¡û
>W1910694813
MDTP02000277
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
2006
1931
-
Val
TAC
[ENA]
¡û
>W1910783578
MPPA01000033
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
197771
197845
+
Val
TAC
[ENA]
¡û
>W1911492115
OBDR01000001
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
385705
385781
+
Val
TAC
[ENA]
¡û
>W1911633766
PVBU01000005
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
38134
38058
-
Val
TAC
[ENA]
¡û
>W1911653193
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
202479
202555
+
Val
TAC
[ENA]
¡û
>W1610670237
LKAZ01000027
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
60642
60567
-
Val
TAC
[ENA]
¡û
>W1610919849
LSRU01000003
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
34446
34370
-
Val
TAC
[ENA]
¡û
>W1611052483
MAFX01000001
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
30398
30474
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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