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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182682 (14 seq.)
>W1711124903
LUKQ02000076
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
19479
19403
-
Pro
CGG
[ENA]
¡û
>C171118739
CP021425
Gammaproteobacteria
Oleiphilus messinensis ME102 [CP021425]
2245161
2245085
-
Pro
CGG
-
¡û
>C010457
CP000155
Gammaproteobacteria
Hahella chejuensis KCTC 2396 [CP000155]
22827
22751
-
Pro
CGG
[Ensembl]
¡û
>WENV180370335
OBOH01074888
[OBOH] marine metagenome; ENVO:00002010
367
291
-
Pro
CGG
[ENA]
¢þ
>WENV170646290
JQGG01139976
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
7
83
+
Pro
CGG
[ENA]
¢þ
>C191004466
AP018725
Gammaproteobacteria
Sulfuriflexus mobilis aks1 [AP018725]
2378376
2378452
+
Pro
CGG
-
¡û
>C191143813
CP035490
Gammaproteobacteria
Hahella sp. KA22 [CP035490]
597773
597697
-
Pro
CGG
-
¡û
>W141775965
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
777651
777727
+
Pro
CGG
[ENA]
¡û
>W141775993
JOKH01000001
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
1678133
1678209
+
Pro
CGG
[ENA]
¡û
>W1910794393
MRYI01000005
Gammaproteobacteria
Hahella sp. CCB-MM4 [MRYI]
253083
253007
-
Pro
CGG
[ENA]
¡û
>W1911283852
NTLB01000001
Gammaproteobacteria
Mangrovitalea sediminis M11-4 [NTLB]
1152541
1152465
-
Pro
CGG
[ENA]
¡û
>W1810176366
PJPV01000162
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
10177
10253
+
Pro
CGG
[ENA]
¡û
>C161054064
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
3715427
3715351
-
Pro
CGG
[Ensembl]
¡û
>W1610935848
LUKQ01000212
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
19479
19403
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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