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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183193 (112 seq.)
>W141042748
AMET01000152
Bacteroidota
Capnocytophaga sp. oral taxon 332 oral taxon 332 str. F0381 [AMET]
22182
22106
-
Met
CAT
[ENA]
¡û
>W141042755
AMEU01000013
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
326
402
+
Met
CAT
[ENA]
¡û
>WENV180718538
ODGG01008321
[ODGG] human metagenome; G_DNA_Buccal mucosa
341
415
+
Ile2
CAT
[ENA]
¡û
>WENV180725409
ODGR01084279
[ODGR] human metagenome; G_DNA_Tongue dorsum
131
205
+
Ile2
CAT
[ENA]
¡û
>WENV180727006
ODGU01001468
[ODGU] human metagenome; G_DNA_Supragingival plaque
7264
7338
+
Ile2
CAT
[ENA]
¡û
>WENV180727137
ODGU01002442
[ODGU] human metagenome; G_DNA_Supragingival plaque
7790
7714
-
Ile2
CAT
[ENA]
¡û
>WENV180727253
ODGU01003481
[ODGU] human metagenome; G_DNA_Supragingival plaque
5754
5679
-
Ile2
CAT
[ENA]
¡û
>WENV180727404
ODGU01004971
[ODGU] human metagenome; G_DNA_Supragingival plaque
2349
2425
+
Ile2
CAT
[ENA]
¡û
>WENV180728591
ODGU01067743
[ODGU] human metagenome; G_DNA_Supragingival plaque
505
431
-
Ile2
CAT
[ENA]
¡û
>WENV180732312
ODGY01000121
[ODGY] human metagenome; G_DNA_Supragingival plaque
5396
5470
+
Ile2
CAT
[ENA]
¡û
>WENV180732571
ODGY01001516
[ODGY] human metagenome; G_DNA_Supragingival plaque
304
378
+
Ile2
CAT
[ENA]
¡û
>WENV180738573
ODHD01000110
[ODHD] human metagenome; G_DNA_Supragingival plaque
71737
71663
-
Ile2
CAT
[ENA]
¡û
>WENV180750417
ODHS01002071
[ODHS] human metagenome; G_DNA_Supragingival plaque
8752
8678
-
Ile2
CAT
[ENA]
¡û
>WENV180751662
ODHS01101151
[ODHS] human metagenome; G_DNA_Supragingival plaque
365
439
+
Ile2
CAT
[ENA]
¡û
>WENV180759662
ODHY01070617
[ODHY] human metagenome; G_DNA_Buccal mucosa
139
213
+
Ile2
CAT
[ENA]
¡û
>WENV180767451
ODIG01000057
[ODIG] human metagenome; G_DNA_Tongue dorsum
23993
24067
+
Ile2
CAT
[ENA]
¡û
>WENV180777778
ODIL01098050
[ODIL] human metagenome; G_DNA_Supragingival plaque
133
207
+
Ile2
CAT
[ENA]
¡û
>WENV180777878
ODIM01000023
[ODIM] human metagenome; G_DNA_Supragingival plaque
79503
79429
-
Ile2
CAT
[ENA]
¡û
>WENV180781809
ODIP01004461
[ODIP] human metagenome; G_DNA_Supragingival plaque
3610
3687
+
Ile2
CAT
[ENA]
¡û
>WENV180786939
ODIS01000569
[ODIS] human metagenome; G_DNA_Supragingival plaque
7386
7310
-
Ile2
CAT
[ENA]
¡û
>WENV180787147
ODIS01001694
[ODIS] human metagenome; G_DNA_Supragingival plaque
245
319
+
Ile2
CAT
[ENA]
¡û
>WENV180796258
ODJB01002450
[ODJB] human metagenome; G_DNA_Supragingival plaque
311
385
+
Ile2
CAT
[ENA]
¡û
>WENV180803832
ODJG01000101
[ODJG] human metagenome; G_DNA_Supragingival plaque
22674
22748
+
Ile2
CAT
[ENA]
¡û
>WENV180806710
ODJI01000011
[ODJI] human metagenome; G_DNA_Tongue dorsum
67293
67219
-
Ile2
CAT
[ENA]
¡û
>WENV180813569
ODJO01001192
[ODJO] human metagenome; G_DNA_Supragingival plaque
9866
9792
-
Ile2
CAT
[ENA]
¡û
>WENV180822207
ODJT01000078
[ODJT] human metagenome; G_DNA_Supragingival plaque
13768
13694
-
Ile2
CAT
[ENA]
¡û
>WENV180832126
ODKC01000542
[ODKC] human metagenome; G_DNA_Supragingival plaque
9295
9221
-
Ile2
CAT
[ENA]
¡û
>WENV180834845
ODKE01000033
[ODKE] human metagenome; G_DNA_Supragingival plaque
53399
53473
+
Ile2
CAT
[ENA]
¡û
>WENV180845692
ODKT01001589
[ODKT] human metagenome; G_DNA_Supragingival plaque
9879
9805
-
Ile2
CAT
[ENA]
¡û
>WENV180845763
ODKT01001996
[ODKT] human metagenome; G_DNA_Supragingival plaque
3413
3487
+
Ile2
CAT
[ENA]
¡û
>WENV180852118
ODKW01000020
[ODKW] human metagenome; G_DNA_Tongue dorsum
18143
18069
-
Ile2
CAT
[ENA]
¡û
>WENV180859444
ODLD01000699
[ODLD] human metagenome; G_DNA_Supragingival plaque
10486
10412
-
Ile2
CAT
[ENA]
¡û
>WENV180859564
ODLD01001404
[ODLD] human metagenome; G_DNA_Supragingival plaque
8398
8322
-
Ile2
CAT
[ENA]
¡û
>WENV180860818
ODLE01000133
[ODLE] human metagenome; G_DNA_Tongue dorsum
22260
22186
-
Ile2
CAT
[ENA]
¡û
>WENV180888136
ODMN01000079
[ODMN] human metagenome; G_DNA_Supragingival plaque
40707
40633
-
Ile2
CAT
[ENA]
¡û
>WENV180888432
ODMN01000927
[ODMN] human metagenome; G_DNA_Supragingival plaque
6124
6198
+
Ile2
CAT
[ENA]
¡û
>WENV180935145
ODTS01076049
[ODTS] human metagenome; G_DNA_Subgingival plaque
106
32
-
Ile2
CAT
[ENA]
¡û
>WENV180937019
ODTV01005153
[ODTV] human metagenome; G_DNA_Buccal mucosa
114
40
-
Ile2
CAT
[ENA]
¡û
>WENV180937840
ODTX01000110
[ODTX] human metagenome; G_DNA_Supragingival plaque
9010
9084
+
Ile2
CAT
[ENA]
¡û
>WENV180938041
ODTX01000447
[ODTX] human metagenome; G_DNA_Supragingival plaque
18145
18069
-
Ile2
CAT
[ENA]
¡û
>WENV180939844
ODTX01105695
[ODTX] human metagenome; G_DNA_Supragingival plaque
373
447
+
Ile2
CAT
[ENA]
¡û
>WENV180943640
ODUC01001340
[ODUC] human metagenome; G_DNA_Supragingival plaque
3627
3701
+
Ile2
CAT
[ENA]
¡û
>WENV180944433
ODUC01017321
[ODUC] human metagenome; G_DNA_Supragingival plaque
2625
2700
+
Ile2
CAT
[ENA]
¡û
>WENV180951614
ODUH01036065
[ODUH] human metagenome; G_DNA_Subgingival plaque
731
806
+
Ile2
CAT
[ENA]
¡û
>WENV180953993
ODUJ01000112
[ODUJ] human metagenome; G_DNA_Tongue dorsum
51578
51504
-
Ile2
CAT
[ENA]
¡û
>WENV180958783
ODUL01044666
[ODUL] human metagenome; G_DNA_Supragingival plaque
113
187
+
Ile2
CAT
[ENA]
¡û
>WENV180973088
ODUW01001156
[ODUW] human metagenome; G_DNA_Supragingival plaque
8885
8811
-
Ile2
CAT
[ENA]
¡û
>WENV180977604
ODUZ01002184
[ODUZ] human metagenome; G_DNA_Tongue dorsum
104
30
-
Ile2
CAT
[ENA]
¡û
>WENV180980764
ODVE01001731
[ODVE] human metagenome; G_DNA_Supragingival plaque
347
421
+
Ile2
CAT
[ENA]
¡û
>WENV180983444
ODVF01012625
[ODVF] human metagenome; G_DNA_Supragingival plaque
2458
2384
-
Ile2
CAT
[ENA]
¡û
>WENV180984019
ODVF01082129
[ODVF] human metagenome; G_DNA_Supragingival plaque
438
512
+
Ile2
CAT
[ENA]
¡û
>WENV180984043
ODVF01088326
[ODVF] human metagenome; G_DNA_Supragingival plaque
404
478
+
Ile2
CAT
[ENA]
¡û
>WENV180984947
ODVJ01000181
[ODVJ] human metagenome; G_DNA_Tongue dorsum
24710
24784
+
Ile2
CAT
[ENA]
¡û
>WENV180986517
ODVK01000052
[ODVK] human metagenome; G_DNA_Supragingival plaque
85671
85597
-
Ile2
CAT
[ENA]
¡û
>WENV180990261
ODVN01000708
[ODVN] human metagenome; G_DNA_Tongue dorsum
19703
19629
-
Ile2
CAT
[ENA]
¡û
>WENV180999193
ODVT01008641
[ODVT] human metagenome; G_DNA_Buccal mucosa
2658
2584
-
Ile2
CAT
[ENA]
¡û
>WENV180999234
ODVT01009584
[ODVT] human metagenome; G_DNA_Buccal mucosa
2658
2584
-
Ile2
CAT
[ENA]
¡û
>WENV181002718
ODVX01001356
[ODVX] human metagenome; G_DNA_Supragingival plaque
75
1
-
Ile2
CAT
[ENA]
¡û
>WENV181002873
ODVX01002370
[ODVX] human metagenome; G_DNA_Supragingival plaque
4992
5066
+
Ile2
CAT
[ENA]
¡û
>WENV181007618
ODWE01000301
[ODWE] human metagenome; G_DNA_Supragingival plaque
24733
24809
+
Ile2
CAT
[ENA]
¡û
>WENV181007959
ODWE01001331
[ODWE] human metagenome; G_DNA_Supragingival plaque
13312
13237
-
Ile2
CAT
[ENA]
¡û
>WENV181008051
ODWE01001668
[ODWE] human metagenome; G_DNA_Supragingival plaque
7659
7585
-
Ile2
CAT
[ENA]
¡û
>WENV181012400
ODWK01000166
[ODWK] human metagenome; G_DNA_Supragingival plaque
11129
11203
+
Ile2
CAT
[ENA]
¡û
>WENV181019963
ODWU01028651
[ODWU] human metagenome; G_DNA_Supragingival plaque
1105
1031
-
Ile2
CAT
[ENA]
¡û
>WENV181029429
ODXF01000253
[ODXF] human metagenome; G_DNA_Supragingival plaque
7417
7491
+
Ile2
CAT
[ENA]
¡û
>WENV181043911
ODXV01001483
[ODXV] human metagenome; G_DNA_Tongue dorsum
1066
992
-
Ile2
CAT
[ENA]
¡û
>WENV181050489
ODYD01021604
[ODYD] human metagenome; G_DNA_Supragingival plaque
402
476
+
Ile2
CAT
[ENA]
¡û
>WENV181052700
ODYG01012572
[ODYG] human metagenome; G_DNA_Tongue dorsum
307
381
+
Ile2
CAT
[ENA]
¡û
>WENV181063416
ODYP01000714
[ODYP] human metagenome; G_DNA_Supragingival plaque
6657
6731
+
Ile2
CAT
[ENA]
¡û
>WENV181065623
ODYT01055500
[ODYT] human metagenome; G_DNA_Buccal mucosa
174
248
+
Ile2
CAT
[ENA]
¡û
>WENV181066989
ODZI01004406
[ODZI] human metagenome; G_DNA_Supragingival plaque
75
1
-
Ile2
CAT
[ENA]
¡û
>WENV181067197
ODZI01009043
[ODZI] human metagenome; G_DNA_Supragingival plaque
327
401
+
Ile2
CAT
[ENA]
¡û
>WENV181069926
OEAE01000054
[OEAE] human metagenome; G_DNA_Supragingival plaque
78395
78321
-
Ile2
CAT
[ENA]
¡û
>WENV181075979
OEAP01001009
[OEAP] human metagenome; G_DNA_Supragingival plaque
9975
10049
+
Ile2
CAT
[ENA]
¡û
>WENV181076249
OEAP01002950
[OEAP] human metagenome; G_DNA_Supragingival plaque
8497
8423
-
Ile2
CAT
[ENA]
¡û
>WENV181079083
OEAS01001825
[OEAS] human metagenome; G_DNA_Supragingival plaque
681
755
+
Ile2
CAT
[ENA]
¡û
>WENV181082961
OEAV01001432
[OEAV] human metagenome; G_DNA_Supragingival plaque
3554
3628
+
Ile2
CAT
[ENA]
¡û
>WENV181083183
OEAV01002956
[OEAV] human metagenome; G_DNA_Supragingival plaque
6745
6821
+
Ile2
CAT
[ENA]
¡û
>WENV181084732
OEAX01000044
[OEAX] human metagenome; G_DNA_Tongue dorsum
26590
26664
+
Ile2
CAT
[ENA]
¡û
>WENV181091073
OEBC01011089
[OEBC] human metagenome; G_DNA_Supragingival plaque
2645
2571
-
Ile2
CAT
[ENA]
¡û
>WENV181091713
OEBC01073086
[OEBC] human metagenome; G_DNA_Supragingival plaque
640
714
+
Ile2
CAT
[ENA]
¡û
>WENV181101083
OECM01002125
[OECM] human metagenome; G_DNA_Buccal mucosa
113
187
+
Ile2
CAT
[ENA]
¡û
>WENV181107512
OEEI01009936
[OEEI] human metagenome; G_DNA_Supragingival plaque
289
363
+
Ile2
CAT
[ENA]
¡û
>WENV181122087
OEFL01070998
[OEFL] human metagenome; G_DNA_Supragingival plaque
83
157
+
Ile2
CAT
[ENA]
¡û
>WENV181123554
OEFQ01000032
[OEFQ] human metagenome; G_DNA_Supragingival plaque
77533
77459
-
Ile2
CAT
[ENA]
¡û
>WENV181140684
OEGT01000051
[OEGT] human metagenome; G_DNA_Throat
43637
43563
-
Ile2
CAT
[ENA]
¡û
>WENV181143019
OEHM01000051
[OEHM] human metagenome; G_DNA_Supragingival plaque
94240
94166
-
Ile2
CAT
[ENA]
¡û
>WENV181150101
OEHW01000471
[OEHW] human metagenome; G_DNA_Tongue dorsum
25751
25827
+
Ile2
CAT
[ENA]
¡û
>WENV181152209
OEIA01000381
[OEIA] human metagenome; G_DNA_Supragingival plaque
16267
16193
-
Ile2
CAT
[ENA]
¡û
>WENV181159946
OEIK01000761
[OEIK] human metagenome; G_DNA_Supragingival plaque
9874
9800
-
Ile2
CAT
[ENA]
¡û
>WENV181179152
OEJT01001622
[OEJT] human metagenome; G_DNA_Supragingival plaque
379
453
+
Ile2
CAT
[ENA]
¡û
>WENV181179347
OEJT01003614
[OEJT] human metagenome; G_DNA_Supragingival plaque
3247
3321
+
Ile2
CAT
[ENA]
¡û
>WENV181181975
OEJV01001081
[OEJV] human metagenome; G_DNA_Supragingival plaque
7868
7942
+
Ile2
CAT
[ENA]
¡û
>WENV183508332
OMHC01003468
[OMHC] human oral metagenome; human oral
547
621
+
Ile2
CAT
[ENA]
¡û
>C181055615
CP022022
Bacteroidota
Capnocytophaga endodontalis ChDC OS43 [CP022022]
761128
761202
+
Met
CAT
-
¡û
>C181063519
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
1261179
1261253
+
Met
CAT
-
¡û
>C181063808
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
2232738
2232664
-
Met
CAT
-
¡û
>C181148008
CP027229
Bacteroidota
Capnocytophaga sp. oral taxon 878 F0545 [CP027229]
2309800
2309725
-
Met
CAT
-
¡û
>C181224948
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
1447371
1447445
+
Met
CAT
-
¡û
>C191212264
LR134489
Bacteroidota
Capnocytophaga sputigena NCTC11097 [LR134489]
1345795
1345869
+
Met
CAT
-
¡û
>W1910919064
NIBW01000001
Bacteroidota
Capnocytophaga sputigena H6490 [NIBW]
1116609
1116535
-
Met
CAT
[ENA]
¡û
>W2010968788
NIBW01000001
Bacteroidota
Capnocytophaga sputigena H6490 [NIBW]
1116609
1116535
-
Ile2
CAT
[ENA]
¡û
>W2011764410
UAVP01000009
Bacteroidota
Capnocytophaga sputigena NCTC11653 [UAVP]
89591
89517
-
Ile2
CAT
[ENA]
¡û
>W2110408965
JAEFDB010000014
Bacteroidota
Capnocytophaga periodontitidis p1a2 [JAEFDB]
70674
70600
-
Ile2
CAT
[ENA]
¡û
>W2110408998
JAEFDC010000012
Bacteroidota
Capnocytophaga periodontitidis 051621 [JAEFDC]
93102
93028
-
Ile2
CAT
[ENA]
¡û
>W2110452847
JAESPH010000019
Bacteroidota
Capnocytophaga genosp. AHN8471 AHN 9798 [JAESPH]
290
364
+
Ile2
CAT
[ENA]
¡û
>W2110452894
JAESPI010000067
Bacteroidota
Capnocytophaga genosp. AHN8471 AHN 9528 [JAESPI]
8339
8265
-
Ile2
CAT
[ENA]
¡û
>W2110452912
JAESPJ010000015
Bacteroidota
Capnocytophaga genosp. AHN8471 AHN 8751 [JAESPJ]
82783
82709
-
Ile2
CAT
[ENA]
¡û
>W2110452968
JAESPK010000030
Bacteroidota
Capnocytophaga genosp. AHN8471 AHN 8471 [JAESPK]
277
351
+
Ile2
CAT
[ENA]
¡û
>W2110522418
JAGDYP010000003
Bacteroidota
Capnocytophaga bilenii Marseille-Q4570 [JAGDYP]
217727
217651
-
Ile2
CAT
[ENA]
¡û
>C161068911
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
416964
416890
-
Met
CAT
[Ensembl]
¡û
>W1710571435
FOVX01000009
Bacteroidota
Capnocytophaga haemolytica [FOVX]
80284
80358
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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