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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18412 (106 seq.)
>W1710892052
LNDJ01000024
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
42535
42445
-
Ser
TGA
[ENA]
¡û
>W1710915835
LNUO01000001
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
18679
18769
+
Ser
TGA
[ENA]
¡û
>W1711227896
LXWA01000083
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
2412
2322
-
Ser
TGA
[ENA]
¡û
>W1711682894
MRYA01000001
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
515017
515107
+
Ser
TGA
[ENA]
¡û
>W1711682936
MRYB01000001
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
406474
406564
+
Ser
TGA
[ENA]
¡û
>W1711683009
MRYC01000018
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
15019
15109
+
Ser
TGA
[ENA]
¡û
>C171019150
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1237168
1237078
-
Ser
TGA
-
¡û
>C017897
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
1911466
1911556
+
Ser
TGA
[Ensembl]
¡û
>C017898
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
1911745
1911835
+
Ser
TGA
[Ensembl]
¡û
>WENV180101087
OAOU01000343
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1633
1543
-
Ser
TGA
[ENA]
¡û
>W141195667
AYUI01000038
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
39508
39418
-
Ser
TGA
[ENA]
¡û
>W141200008
AYXN01000034
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
39675
39585
-
Ser
TGA
[ENA]
¡û
>WENV182550237
OJBZ01016582
[OJBZ] seawater metagenome; Sea water
973
883
-
Ser
TGA
[ENA]
¡û
>WENV182562538
OJDZ01008024
[OJDZ] seawater metagenome; Sea water
19
109
+
Ser
TGA
[ENA]
¡û
>WENV183716702
PDWJ01000142
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
84332
84242
-
Ser
TGA
[ENA]
¡û
>WENV170014710
AYSL01006143
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
669
759
+
Ser
TGA
[ENA]
¡û
>WENV170243526
CEQO01157805
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
628
538
-
Ser
TGA
[ENA]
¡û
>WENV170290639
CESA01035457
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
848
758
-
Ser
TGA
[ENA]
¡û
>WENV170379943
CETV01259862
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
329
239
-
Ser
TGA
[ENA]
¡û
>WENV170579684
FUFK010040363
[FUFK] metagenome; unknown
2639
2549
-
Ser
TGA
[ENA]
¡û
>WENV170579891
FUFK010042228
[FUFK] metagenome; unknown
8764
8854
+
Ser
TGA
[ENA]
¡û
>WENV170590714
FUFK010732348
[FUFK] metagenome; unknown
1692
1602
-
Ser
TGA
[ENA]
¡û
>WENV170592924
FUFK010827947
[FUFK] metagenome; unknown
1126
1036
-
Ser
TGA
[ENA]
¡û
>WENV170593732
FUFK010989169
[FUFK] metagenome; unknown
248
158
-
Ser
TGA
[ENA]
¡û
>WENV170790674
MDSV01069960
[MDSV] marine metagenome; seawater
2259
2169
-
Ser
TGA
[ENA]
¡û
>WENV170822287
MDSY01037637
[MDSY] marine metagenome; seawater
1745
1655
-
Ser
TGA
[ENA]
¡û
>WENV170825059
MDSY01086914
[MDSY] marine metagenome; seawater
2951
3041
+
Ser
TGA
[ENA]
¡û
>W09105577
AAPX01000011
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
1228
1138
-
Ser
TGA
[ENA]
¡û
>W09105578
AAPX01000011
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
949
859
-
Ser
TGA
[ENA]
¡û
>C191163836
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
723545
723635
+
Ser
TGA
-
¡û
>W141701343
JMKP01000011
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
10738
10648
-
Ser
TGA
[ENA]
¡û
>W141701344
JMKP01000011
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
10494
10404
-
Ser
TGA
[ENA]
¡û
>W1910372532
FUGE01000172
Gammaproteobacteria
Psychrobacter piechaudii [FUGE]
308
398
+
Ser
TGA
[ENA]
¡û
>W1910377580
FUKN01000001
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
447401
447491
+
Ser
TGA
[ENA]
¡û
>W1910891655
NEXR01000009
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
17873
17783
-
Ser
TGA
[ENA]
¡û
>W1911203665
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
740517
740607
+
Ser
TGA
[ENA]
¡û
>W1911397551
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
617609
617699
+
Ser
TGA
[ENA]
¡û
>W1911397552
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
617836
617926
+
Ser
TGA
[ENA]
¡û
>W1911534892
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
321013
320923
-
Ser
TGA
[ENA]
¡û
>W1810157257
PJBU01000096
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
28948
29038
+
Ser
TGA
[ENA]
¡û
>W1810157372
PJBX01000142
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
12773
12863
+
Ser
TGA
[ENA]
¡û
>W2010401322
FUGE01000172
Gammaproteobacteria
Psychrobacter piechaudii [FUGE]
308
398
+
Ser
TGA
[ENA]
¡û
>W2010402417
FUKN01000001
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
447401
447491
+
Ser
TGA
[ENA]
¡û
>W2010956525
NEXR01000009
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
17873
17783
-
Ser
TGA
[ENA]
¡û
>W2011049178
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
740517
740607
+
Ser
TGA
[ENA]
¡û
>W2011134359
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
617609
617699
+
Ser
TGA
[ENA]
¡û
>W2011134360
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
617836
617926
+
Ser
TGA
[ENA]
¡û
>W2011167662
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
321013
320923
-
Ser
TGA
[ENA]
¡û
>W2011838458
UGVC01000001
Gammaproteobacteria
Psychrobacter phenylpyruvicus NCTC10526 [UGVC]
962498
962408
-
Ser
TGA
[ENA]
¡û
>W2011838459
UGVC01000001
Gammaproteobacteria
Psychrobacter phenylpyruvicus NCTC10526 [UGVC]
962254
962164
-
Ser
TGA
[ENA]
¡û
>W2012071520
VKLR01000009
Gammaproteobacteria
Psychrobacter sp. YGAH215 [VKLR]
108541
108631
+
Ser
TGA
[ENA]
¡û
>W2012324970
WFKQ01000003
Gammaproteobacteria
Psychrobacter sanguinis SM868 [WFKQ]
225
315
+
Ser
TGA
[ENA]
¡û
>W2110105687
CAJGYQ010000003
Gammaproteobacteria
Psychrobacter alimentarius [CAJGYQ]
15516
15426
-
Ser
TGA
[ENA]
¡û
>W2110105711
CAJGYR010000001
Gammaproteobacteria
Psychrobacter adeliensis [CAJGYR]
458597
458687
+
Ser
TGA
[ENA]
¡û
>W2110105761
CAJGYS010000001
Gammaproteobacteria
Psychrobacter faecalis [CAJGYS]
689963
690053
+
Ser
TGA
[ENA]
¡û
>W2110105843
CAJGYT010000001
Gammaproteobacteria
Psychrobacter aestuarii [CAJGYT]
769379
769289
-
Ser
TGA
[ENA]
¡û
>W2110105879
CAJGYU010000020
Gammaproteobacteria
Psychrobacter celer [CAJGYU]
27192
27282
+
Ser
TGA
[ENA]
¡û
>W2110105913
CAJGYV010000001
Gammaproteobacteria
Psychrobacter ciconiae [CAJGYV]
1916083
1916173
+
Ser
TGA
[ENA]
¡û
>W2110106199
CAJGZC010000001
Gammaproteobacteria
Psychrobacter alimentarius [CAJGZC]
15171
15081
-
Ser
TGA
[ENA]
¡û
>W2110106377
CAJGZG010000044
Gammaproteobacteria
Psychrobacter faecalis [CAJGZG]
8421
8331
-
Ser
TGA
[ENA]
¡û
>W2110106832
CAJGZR010000005
Gammaproteobacteria
Psychrobacter immobilis [CAJGZR]
71898
71808
-
Ser
TGA
[ENA]
¡û
>W2110107480
CAJHAF010000001
Gammaproteobacteria
Psychrobacter jeotgali [CAJHAF]
1493754
1493664
-
Ser
TGA
[ENA]
¡û
>W2110107521
CAJHAG010000016
Gammaproteobacteria
Psychrobacter maritimus [CAJHAG]
8326
8236
-
Ser
TGA
[ENA]
¡û
>W2110107763
CAJHAM010000010
Gammaproteobacteria
Psychrobacter oceani [CAJHAM]
63751
63661
-
Ser
TGA
[ENA]
¡û
>W2110107832
CAJHAO010000001
Gammaproteobacteria
Psychrobacter pacificensis [CAJHAO]
744715
744805
+
Ser
TGA
[ENA]
¡û
>W2110107935
CAJHAQ010000001
Gammaproteobacteria
Psychrobacter phenylpyruvicus [CAJHAQ]
1989671
1989761
+
Ser
TGA
[ENA]
¡û
>W2110107936
CAJHAQ010000001
Gammaproteobacteria
Psychrobacter phenylpyruvicus [CAJHAQ]
1989915
1990005
+
Ser
TGA
[ENA]
¡û
>W2110108089
CAJHAT010000005
Gammaproteobacteria
Psychrobacter pulmonis [CAJHAT]
251888
251798
-
Ser
TGA
[ENA]
¡û
>W2110108113
CAJHAU010000001
Gammaproteobacteria
Psychrobacter pulmonis [CAJHAU]
1989852
1989942
+
Ser
TGA
[ENA]
¡û
>W2110108190
CAJHAW010000004
Gammaproteobacteria
Psychrobacter salsus [CAJHAW]
42087
42177
+
Ser
TGA
[ENA]
¡û
>W2110108242
CAJHAX010000023
Gammaproteobacteria
Psychrobacter sanguinis [CAJHAX]
35148
35058
-
Ser
TGA
[ENA]
¡û
>W2110108243
CAJHAX010000023
Gammaproteobacteria
Psychrobacter sanguinis [CAJHAX]
34904
34814
-
Ser
TGA
[ENA]
¡û
>W2110108295
CAJHAY010000007
Gammaproteobacteria
Psychrobacter sanguinis [CAJHAY]
76462
76372
-
Ser
TGA
[ENA]
¡û
>W2110108296
CAJHAY010000007
Gammaproteobacteria
Psychrobacter sanguinis [CAJHAY]
76218
76128
-
Ser
TGA
[ENA]
¡û
>W2110108366
CAJHBA010000002
Gammaproteobacteria
Psychrobacter sanguinis [CAJHBA]
125238
125328
+
Ser
TGA
[ENA]
¡û
>W2110108367
CAJHBA010000002
Gammaproteobacteria
Psychrobacter sanguinis [CAJHBA]
125482
125572
+
Ser
TGA
[ENA]
¡û
>W2110108427
CAJHBB010000019
Gammaproteobacteria
Psychrobacter sanguinis [CAJHBB]
5044
4954
-
Ser
TGA
[ENA]
¡û
>W2110108428
CAJHBB010000019
Gammaproteobacteria
Psychrobacter sanguinis [CAJHBB]
4800
4710
-
Ser
TGA
[ENA]
¡û
>W2110108675
CAJHBH010000002
Gammaproteobacteria
Psychrobacter sp. H7-1 [CAJHBH]
301
391
+
Ser
TGA
[ENA]
¡û
>W2110108705
CAJHBH010000039
Gammaproteobacteria
Psychrobacter sp. H7-1 [CAJHBH]
26430
26520
+
Ser
TGA
[ENA]
¡û
>W2110108767
CAJHBJ010000001
Gammaproteobacteria
Psychrobacter sp. HII-4 [CAJHBJ]
850
760
-
Ser
TGA
[ENA]
¡û
>W2110109080
CAJHBQ010000001
Gammaproteobacteria
Psychrobacter submarinus [CAJHBQ]
857629
857539
-
Ser
TGA
[ENA]
¡û
>W2110168501
JABAST010000027
Gammaproteobacteria
Psychrobacter faecalis DSM 14664 [JABAST]
16122
16212
+
Ser
TGA
[ENA]
¡û
>W2110168543
JABASU010000016
Gammaproteobacteria
Psychrobacter celer DSM 23510 [JABASU]
48974
49064
+
Ser
TGA
[ENA]
¡û
>W2110185831
JABUKA010000006
Gammaproteobacteria
Psychrobacter ciconiae MF31 [JABUKA]
132524
132434
-
Ser
TGA
[ENA]
¡û
>W2110188842
JABUZI010000100
Gammaproteobacteria
Psychrobacter faecalis H5 [JABUZI]
17087
17177
+
Ser
TGA
[ENA]
¡û
>W2110188927
JABUZK010000117
Gammaproteobacteria
Psychrobacter celer 91 [JABUZK]
35626
35716
+
Ser
TGA
[ENA]
¡û
>W2110201820
JACDWT010000089
Gammaproteobacteria
Psychrobacter sp. bablab_jr012 [JACDWT]
325
235
-
Ser
TGA
[ENA]
¡û
>W2110202850
JACDXT010000051
Gammaproteobacteria
Psychrobacter sp. bablab_jr014 [JACDXT]
325
235
-
Ser
TGA
[ENA]
¡û
>W2110260761
JACSQR010000001
Gammaproteobacteria
Psychrobacter sp. Sa4CVA2 [JACSQR]
238471
238381
-
Ser
TGA
[ENA]
¡û
>W2110315728
JADGFW010000002
Gammaproteobacteria
Psychrobacter sp. M9-54-1 [JADGFW]
44155
44245
+
Ser
TGA
[ENA]
¡û
>W2110456271
JAEVFH010000002
Gammaproteobacteria
Psychrobacter pacificensis E23 [JAEVFH]
209952
209862
-
Ser
TGA
[ENA]
¡û
>W2110521016
JAGBKN010000004
Gammaproteobacteria
Psychrobacter sp. F2608 [JAGBKN]
153681
153771
+
Ser
TGA
[ENA]
¡û
>C211001701
AP019516
Gammaproteobacteria
Psychrobacter sp. KH172YL61 [AP019516]
801958
802048
+
Ser
TGA
-
¡û
>C211132636
CP060390
Gammaproteobacteria
Psychrobacter sp. KCTC 72983 [CP060390]
2032228
2032318
+
Ser
TGA
-
¡û
>C241302104
CP132595
Gammaproteobacteria
Psychrobacter sp. van23A [CP132595]
2356265
2356175
-
Ser
TGA
-
¡û
>W2310025156
BSOK01000038
Gammaproteobacteria
Psychrobacter pacificensis NBRC 103191 [BSOK]
74771
74681
-
Ser
TGA
[ENA]
¡û
>W11163481
AFHU01000150
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
1732
1822
+
Ser
TGA
[ENA]
¡û
>W11163482
AFHU01000150
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
1976
2066
+
Ser
TGA
[ENA]
¡û
>C161079283
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
2521896
2521806
-
Ser
TGA
[Ensembl]
¡û
>W1610071759
BCUH01000071
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
10137
10047
-
Ser
TGA
[ENA]
¡û
>W1610752318
LNDJ01000024
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
42535
42445
-
Ser
TGA
[ENA]
¡û
>W1610774074
LNUO01000001
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
18679
18769
+
Ser
TGA
[ENA]
¡û
>W1611011860
LXWA01000083
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
2412
2322
-
Ser
TGA
[ENA]
¡û
>W1710068961
BCUH01000071
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
10137
10047
-
Ser
TGA
[ENA]
¡û
>W1710513799
FNAL01000003
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
15527
15617
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK