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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184456 (36 seq.)
>W131146331
AQHR01000092
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
87
11
-
Ala
GGC
[ENA]
¡û
>W131179034
ARMB01000044
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
100526
100602
+
Ala
GGC
[ENA]
¡û
>W131211923
ATNM01000139
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
41456
41532
+
Ala
GGC
[ENA]
¡û
>W131223145
AUBV01000008
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
131360
131434
+
Ala
GGC
[ENA]
¡û
>W131223161
AUBW01000004
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
304019
304093
+
Ala
GGC
[ENA]
¡û
>W1711751698
MUNY01000078
Bacteroidota
Algoriphagus sp. A40 [MUNY]
379045
378971
-
Ala
GGC
[ENA]
¡û
>W131167760
ARDN01000003
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
507
431
-
Ala
GGC
[ENA]
¡û
>w022694
AAWS01000039
Bacteroidota
Microscilla marina ATCC 23134 [AAWS]
45579
45657
+
Ala
GGC
[ENA]
¡û
>W141043738
AMGM01000122
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
1141
1215
+
Ala
GGC
[ENA]
¡û
>WENV181368397
OFQL01002331
[OFQL] freshwater metagenome; Freshwater Lake
1457
1531
+
Ala
GGC
[ENA]
¢þ
>WENV181369615
OFQP01012552
[OFQP] freshwater metagenome; Freshwater Lake
421
495
+
Ala
GGC
[ENA]
¢þ
>WENV181370373
OFQS01006593
[OFQS] freshwater metagenome; Freshwater Lake
190
116
-
Ala
GGC
[ENA]
¢þ
>W141148164
AWXR01000077
Bacteroidota
Rhodonellum psychrophilum GCM71 = DSM 17998 [AWXR]
9322
9246
-
Ala
GGC
[ENA]
¡û
>WENV019841
AACY020540484
Marine microbial communities from Global Ocean Sampling (GOS)
1065
1143
+
Ala
GGC
[ENA]
>ENV08002304
ABPQ01008835
microbial mat metagenome; Guerrero Negro Hypersaline Mat 02; altitude 310m AMSL; sample depth 1m below water level, 1-2mm depth into the mat
471
545
+
Ala
GGC
[ENA]
¡û
>WENV170574342
FLYM01027326
[FLYM] hot springs metagenome; Sediment
441
367
-
Ala
GGC
[ENA]
¢þ
>WENV170995110
MWWE01160367
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
92
168
+
Ala
GGC
[ENA]
¢þ
>C181187347
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
4018747
4018821
+
Ala
GGC
-
¡û
>C191175190
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
2192304
2192378
+
Ala
GGC
-
¡û
>C191189165
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
2329446
2329522
+
Ala
GGC
-
¡û
>W141699676
JMIH01000023
Bacteroidota
Anditalea andensis [JMIH]
59232
59156
-
Ala
GGC
[ENA]
¡û
>W1911775216
QXML01000003
Bacteroidota
Algoriphagus lacus N3 [QXML]
290770
290696
-
Ala
GGC
[ENA]
¡û
>W1810400578
PYGF01000003
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
173248
173322
+
Ala
GGC
[ENA]
¡û
>W1810606270
QGOL01000008
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
217297
217371
+
Ala
GGC
[ENA]
¡û
>W1810682171
QKTX01000008
Bacteroidota
Algoriphagus aquaeductus T4 [QKTX]
214726
214800
+
Ala
GGC
[ENA]
¡û
>C151090000
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
333369
333443
+
Ala
GGC
[Ensembl]
¡û
>C11105705
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
401235
401309
+
Ala
GGC
[Ensembl]
¡û
>C161046162
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
212667
212743
+
Ala
GGC
[Ensembl]
¡û
>W1610050124
BBFN01000032
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
158
82
-
Ala
GGC
[ENA]
¡û
>W121071523
AJYA01000016
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
114464
114538
+
Ala
GGC
[ENA]
¡û
>C131003297
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
2270799
2270873
+
Ala
GGC
[Ensembl]
¡û
>W1710046523
BBFN01000032
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
158
82
-
Ala
GGC
[ENA]
¡û
>W1710532204
FNQC01000015
Bacteroidota
Rhodonellum ikkaensis [FNQC]
29217
29141
-
Ala
GGC
[ENA]
¡û
>W1710539788
FNVR01000025
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [FNVR]
210
134
-
Ala
GGC
[ENA]
¡û
>W1710542637
FNZH01000009
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
37050
36974
-
Ala
GGC
[ENA]
¡û
>W1710593083
FRCY01000023
Bacteroidota
Cyclobacterium lianum [FRCY]
53625
53701
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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