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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184470 (111 seq.)
>W1711048727
LRPX01000077
Fusobacteriota
Fusobacterium equinum [LRPX]
4497
4573
+
Met
CAT
[ENA]
¡û
>W1711096445
LTHT01000114
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
13401
13477
+
Met
CAT
[ENA]
¡û
>W1711138554
LVDY01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
793
717
-
Met
CAT
[ENA]
¡û
>W1711138604
LVDZ01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
520
444
-
Met
CAT
[ENA]
¡û
>W1711138650
LVEA01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
1012
936
-
Met
CAT
[ENA]
¡û
>W1711139058
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
10406
10482
+
Met
CAT
[ENA]
¡û
>W1711139125
LVER01000058
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
1020
944
-
Met
CAT
[ENA]
¡û
>W1711139143
LVER01000070
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
163
87
-
Met
CAT
[ENA]
¡û
>W1711139158
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
10406
10482
+
Met
CAT
[ENA]
¡û
>W1711139221
LVET01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
499
423
-
Met
CAT
[ENA]
¡û
>W1711139264
LVEU01000016
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
499
423
-
Met
CAT
[ENA]
¡û
>W1711139317
LVEV01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
142
66
-
Met
CAT
[ENA]
¡û
>W1711139349
LVEW01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
142
66
-
Met
CAT
[ENA]
¡û
>W1711139389
LVEX01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
499
423
-
Met
CAT
[ENA]
¡û
>W1711139429
LVEY01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
499
423
-
Met
CAT
[ENA]
¡û
>W1711139472
LVEZ01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
142
66
-
Met
CAT
[ENA]
¡û
>W1711139517
LVFA01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
142
66
-
Met
CAT
[ENA]
¡û
>W1711139547
LVFB01000016
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
499
423
-
Met
CAT
[ENA]
¡û
>W1711139591
LVFC01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
4528
4604
+
Met
CAT
[ENA]
¡û
>W1711139645
LVFD01000015
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
1012
936
-
Met
CAT
[ENA]
¡û
>W1711139688
LVFE01000020
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
1019
943
-
Met
CAT
[ENA]
¡û
>WENV180044944
MOXS02061916
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
438
514
+
fMet
CAT
[ENA]
¢þ
>WENV180083455
MPMD02062561
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
15616
15692
+
fMet
CAT
[ENA]
¢þ
>W141054937
AOJP01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
44509
44433
-
Met
CAT
[ENA]
¡û
>WENV181074307
OEAO01005650
[OEAO] human metagenome; G_DNA_Tongue dorsum
4459
4535
+
fMet
CAT
[ENA]
¢þ
>WENV181341039
OFMH01005807
[OFMH] human gut metagenome; human gut
147
71
-
fMet
CAT
[ENA]
¢þ
>WENV181363676
OFOU01001328
[OFOU] human gut metagenome; human gut
485
409
-
fMet
CAT
[ENA]
¢þ
>WENV181427968
OGCU01000506
[OGCU] metagenome; Human gut stool
17333
17409
+
fMet
CAT
[ENA]
¢þ
>WENV181428368
OGCV01000297
[OGCV] metagenome; Human gut stool
234
158
-
fMet
CAT
[ENA]
¢þ
>WENV181459008
OGEK01001651
[OGEK] metagenome; Human gut stool
148
72
-
fMet
CAT
[ENA]
¢þ
>WENV181467394
OGER01003385
[OGER] metagenome; Human gut stool
149
73
-
fMet
CAT
[ENA]
¢þ
>WENV181507826
OGGP01002567
[OGGP] metagenome; Human gut stool
3253
3329
+
fMet
CAT
[ENA]
¢þ
>WENV181540220
OGIA01016487
[OGIA] metagenome; Human gut stool
781
857
+
fMet
CAT
[ENA]
¢þ
>WENV181557996
OGIW01001045
[OGIW] metagenome; Human gut stool
147
71
-
fMet
CAT
[ENA]
¢þ
>WENV181560661
OGJC01001038
[OGJC] metagenome; Human gut stool
146
70
-
fMet
CAT
[ENA]
¢þ
>WENV181561582
OGJD01018505
[OGJD] metagenome; Human gut stool
150
74
-
fMet
CAT
[ENA]
¢þ
>WENV181579940
OGJZ01002469
[OGJZ] metagenome; Human gut stool
13379
13455
+
fMet
CAT
[ENA]
¢þ
>WENV181794823
OGRS01003190
[OGRS] human gut metagenome; faeces
3311
3235
-
fMet
CAT
[ENA]
¢þ
>WENV181859826
OGWQ01012299
[OGWQ] human gut metagenome; faeces
149
73
-
fMet
CAT
[ENA]
¢þ
>WENV181879061
OGXE01035556
[OGXE] human gut metagenome; faeces
817
893
+
fMet
CAT
[ENA]
¢þ
>WENV181892570
OGXP01002895
[OGXP] human gut metagenome; faeces
6739
6663
-
fMet
CAT
[ENA]
¢þ
>WENV181948300
OGZE01001319
[OGZE] human gut metagenome; faeces
1559
1483
-
fMet
CAT
[ENA]
¢þ
>WENV181958922
OGZM01000847
[OGZM] human gut metagenome; faeces
16486
16562
+
fMet
CAT
[ENA]
¢þ
>WENV181965629
OGZT01001808
[OGZT] human gut metagenome; faeces
13380
13456
+
fMet
CAT
[ENA]
¢þ
>WENV181970835
OGZY01000113
[OGZY] human gut metagenome; faeces
59484
59560
+
fMet
CAT
[ENA]
¢þ
>WENV182002855
OHBA01022180
[OHBA] human gut metagenome; feces
854
778
-
fMet
CAT
[ENA]
¢þ
>WENV182015630
OHBR01007981
[OHBR] human gut metagenome; feces
34
110
+
fMet
CAT
[ENA]
¢þ
>WENV182478384
OIQN01000727
[OIQN] human gut metagenome; human gut
480
404
-
fMet
CAT
[ENA]
¢þ
>WENV182501903
OIUG01000320
[OIUG] human gut metagenome; human gut
442
518
+
fMet
CAT
[ENA]
¢þ
>W141273953
JAAC01000108
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
50280
50356
+
Met
CAT
[ENA]
¡û
>W141273982
JAAD01000082
Fusobacteriota
Fusobacterium necrophorum DJ-1 [JAAD]
125
49
-
Met
CAT
[ENA]
¡û
>W141274019
JAAE01000196
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
536
612
+
Met
CAT
[ENA]
¡û
>W141274048
JAAF01000192
Fusobacteriota
Fusobacterium necrophorum DAB [JAAF]
4514
4590
+
Met
CAT
[ENA]
¡û
>W141274068
JAAG01000110
Fusobacteriota
Fusobacterium necrophorum BFTR-2 [JAAG]
4503
4579
+
Met
CAT
[ENA]
¡û
>W141274107
JAAH01000172
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
780
704
-
Met
CAT
[ENA]
¡û
>WENV182866926
OKRR01002444
[OKRR] human gut metagenome; faeces
13422
13498
+
fMet
CAT
[ENA]
¢þ
>WENV183290650
OLSH01001269
[OLSH] human gut metagenome; faeces
13398
13474
+
fMet
CAT
[ENA]
¢þ
>WENV183501937
OMGS01018426
[OMGS] human gut metagenome; human gut
512
588
+
fMet
CAT
[ENA]
¢þ
>WENV183760874
PPYE01241218
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1532
1456
-
fMet
CAT
[ENA]
¢þ
>WENV183764006
PPYE01311727
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
692
616
-
fMet
CAT
[ENA]
¢þ
>WENV183764073
PPYE01313461
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1429
1353
-
fMet
CAT
[ENA]
¢þ
>WENV183780570
PPYF01172210
[PPYF] human gut metagenome; stool from patient with Crohn's disease
13403
13479
+
fMet
CAT
[ENA]
¢þ
>C181003900
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
303828
303904
+
Met
CAT
-
¡û
>C181161025
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
802770
802694
-
Met
CAT
-
¡û
>C181161083
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1100881
1100805
-
Met
CAT
-
¡û
>C181161122
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
248608
248532
-
Met
CAT
-
¡û
>C181161155
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
343695
343771
+
Met
CAT
-
¡û
>C181216779
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3088939
3088863
-
Met
CAT
-
¡û
>C191015343
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
36293
36369
+
Met
CAT
-
¡û
>C191016015
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
38121
38197
+
Met
CAT
-
¡û
>C191132394
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
428059
428135
+
Met
CAT
-
¡û
>C191210196
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
25087
25163
+
Met
CAT
-
¡û
>C191219288
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
2930654
2930578
-
Met
CAT
-
¡û
>W141559459
JHWT01000015
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
51135
51211
+
Met
CAT
[ENA]
¡û
>W09118612
ACDD01000063
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
40968
40892
-
Met
CAT
[ENA]
¡û
>W09118729
ACDG01000024
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
9805
9881
+
Met
CAT
[ENA]
¡û
>W09118791
ACDH01000056
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
13324
13400
+
Met
CAT
[ENA]
¡û
>W09120617
ACET01000020
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
42437
42513
+
Met
CAT
[ENA]
¡û
>W1911160162
NPNE01000027
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
519
443
-
Met
CAT
[ENA]
¡û
>W1911160200
NPNF01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_CP [NPNF]
519
443
-
Met
CAT
[ENA]
¡û
>W1810791376
QRIG01000043
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
486
410
-
Met
CAT
[ENA]
¡û
>W1810818412
QSDE01000047
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
1672
1596
-
Met
CAT
[ENA]
¡û
>W1810832248
QSOW01000047
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
516
440
-
Met
CAT
[ENA]
¡û
>W121001914
ADLZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
43915
43839
-
Met
CAT
[ENA]
¡û
>W121021754
AGWJ01000050
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
1975
1899
-
Met
CAT
[ENA]
¡û
>W121066988
AJSY01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
88
12
-
Met
CAT
[ENA]
¡û
>W121112305
ALKK01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
8490
8566
+
Met
CAT
[ENA]
¡û
>W1610026575
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
43476
43400
-
Met
CAT
[ENA]
¡û
>W121021774
AGWJ01000064
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
6398
6474
+
Met
CAT
[ENA]
¡û
>W1610889856
LRPX01000077
Fusobacteriota
Fusobacterium equinum [LRPX]
4497
4573
+
Met
CAT
[ENA]
¡û
>W1610949594
LVDY01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
793
717
-
Met
CAT
[ENA]
¡û
>W1610949644
LVDZ01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
520
444
-
Met
CAT
[ENA]
¡û
>W1610949690
LVEA01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
1012
936
-
Met
CAT
[ENA]
¡û
>W1610950066
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
10406
10482
+
Met
CAT
[ENA]
¡û
>W1610950133
LVER01000058
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
1020
944
-
Met
CAT
[ENA]
¡û
>W1610950151
LVER01000070
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
163
87
-
Met
CAT
[ENA]
¡û
>W1610950166
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
10406
10482
+
Met
CAT
[ENA]
¡û
>W1610950229
LVET01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
499
423
-
Met
CAT
[ENA]
¡û
>W1610950272
LVEU01000016
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
499
423
-
Met
CAT
[ENA]
¡û
>W1610950325
LVEV01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
142
66
-
Met
CAT
[ENA]
¡û
>W1610950357
LVEW01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
142
66
-
Met
CAT
[ENA]
¡û
>W1610950397
LVEX01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
499
423
-
Met
CAT
[ENA]
¡û
>W1610950437
LVEY01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
499
423
-
Met
CAT
[ENA]
¡û
>W1610950480
LVEZ01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
142
66
-
Met
CAT
[ENA]
¡û
>W1610950525
LVFA01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
142
66
-
Met
CAT
[ENA]
¡û
>W1610950555
LVFB01000016
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
499
423
-
Met
CAT
[ENA]
¡û
>W1610950599
LVFC01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
4528
4604
+
Met
CAT
[ENA]
¡û
>W1610950653
LVFD01000015
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
1012
936
-
Met
CAT
[ENA]
¡û
>W1610950696
LVFE01000020
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
1019
943
-
Met
CAT
[ENA]
¡û
>W1710022624
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
43476
43400
-
Met
CAT
[ENA]
¡û
>W1710510370
FMXX01000016
Fusobacteriota
Fusobacterium necrophorum [FMXX]
1253
1177
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK