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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185697 (20 seq.)
>W1711227890
LXWA01000075
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
80434
80350
-
Leu
GAG
[ENA]
¡û
>C171131050
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
93757
93841
+
Leu
GAG
-
¡û
>C015955
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
81553
81637
+
Leu
GAG
[Ensembl]
¡û
>W141199954
AYXM01000052
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
67478
67394
-
Leu
GAG
[ENA]
¡û
>W141200537
AYXZ01000140
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
29384
29300
-
Leu
GAG
[ENA]
¡û
>W141200581
AYYA01000057
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
58915
58831
-
Leu
GAG
[ENA]
¡û
>WENV170726056
LSQX01365869
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
366
282
-
Leu
GAG
[ENA]
¢þ
>C181056034
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1844975
1845059
+
Leu
GAG
-
¡û
>C191163853
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
3147864
3147780
-
Leu
GAG
-
¡û
>W09103324
AAJC01000017
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
50633
50717
+
Leu
GAG
[ENA]
¡û
>W1910377606
FUKN01000014
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
179491
179575
+
Leu
GAG
[ENA]
¡û
>W1910891782
NEXU01000086
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
7696
7612
-
Leu
GAG
[ENA]
¡û
>W1911203647
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1612540
1612456
-
Leu
GAG
[ENA]
¡û
>W1810157368
PJBX01000129
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
30762
30846
+
Leu
GAG
[ENA]
¡û
>W1810157417
PJBY01000079
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
15597
15681
+
Leu
GAG
[ENA]
¡û
>C161042721
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
87872
87956
+
Leu
GAG
-
¡û
>C161042769
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
85084
85168
+
Leu
GAG
[Ensembl]
¡û
>C161079249
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
93650
93734
+
Leu
GAG
[Ensembl]
¡û
>C131017365
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
82679
82763
+
Leu
GAG
[Ensembl]
¡û
>W1611011854
LXWA01000075
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
80434
80350
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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