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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185916 (58 seq.)
>W1710785425
LJHV01000014
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
18597
18521
-
Met
CAT
[ENA]
¡û
>W1710892808
LNED01000022
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
22
98
+
Met
CAT
[ENA]
¡û
>W1711073956
LSJB01000341
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
9108
9184
+
Met
CAT
[ENA]
¡û
>W1711074336
LSJK01000282
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
9114
9190
+
Met
CAT
[ENA]
¡û
>W1711074543
LSJQ01000127
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
5497
5421
-
Met
CAT
[ENA]
¡û
>W1711074944
LSJZ01000230
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
2415
2339
-
Met
CAT
[ENA]
¡û
>W1711074948
LSJZ01000238
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
9102
9178
+
Met
CAT
[ENA]
¡û
>W1711075544
LSKM01000197
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
5515
5439
-
Met
CAT
[ENA]
¡û
>W1711766282
MUYG01000008
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
264879
264803
-
Met
CAT
[ENA]
¡û
>W1711766470
MUYK01000003
Alphaproteobacteria
Erythrobacter colymbi [MUYK]
585062
584986
-
Met
CAT
[ENA]
¡û
>W131058792
ANFX01000029
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
18021
17945
-
Met
CAT
[ENA]
¡û
>C171057342
CP017113
Alphaproteobacteria
Porphyrobacter sp. LM 6 [CP017113]
2916989
2916913
-
Met
CAT
-
¡û
>WENV180019551
FTCC01000394
[FTCC] metagenome; soil
2458
2383
-
fMet
CAT
[ENA]
¡û
>WENV180210078
OBAL01090394
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
428
352
-
fMet
CAT
[ENA]
¡û
>WENV181227073
OFDN01001517
[OFDN] hot springs metagenome; Water
865
941
+
fMet
CAT
[ENA]
¡û
>WENV181323486
OFKY01001532
[OFKY] marine metagenome; sea ice
617
541
-
fMet
CAT
[ENA]
¡û
>WENV181393157
OFRX01061073
[OFRX] seawater metagenome; seawater
317
393
+
fMet
CAT
[ENA]
¡û
>W08011227
ABSK01000021
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
203346
203422
+
Met
CAT
[ENA]
¡û
>WENV182548905
OJBX01001338
[OJBX] seawater metagenome; Sea water
4724
4800
+
fMet
CAT
[ENA]
¡û
>WENV182553954
OJCR01066283
[OJCR] seawater metagenome; Sea water
275
351
+
fMet
CAT
[ENA]
¡û
>WENV182572537
OJFL01019479
[OJFL] seawater metagenome; Sea water
782
858
+
fMet
CAT
[ENA]
¡û
>WENV182573611
OJFP01005847
[OJFP] seawater metagenome; Sea water
1976
1900
-
fMet
CAT
[ENA]
¡û
>WENV182576291
OJFX01008722
[OJFX] seawater metagenome; Sea water
1418
1494
+
fMet
CAT
[ENA]
¡û
>WENV182581378
OJGX01004077
[OJGX] seawater metagenome; Sea water
133
57
-
fMet
CAT
[ENA]
¡û
>WENV182585492
OJHH01036630
[OJHH] seawater metagenome; Sea water
102
178
+
fMet
CAT
[ENA]
¡û
>WENV182586953
OJHK01018283
[OJHK] seawater metagenome; Sea water
153
77
-
fMet
CAT
[ENA]
¡û
>WENV182591954
OJIO01023102
[OJIO] seawater metagenome; Sea water
780
856
+
fMet
CAT
[ENA]
¡û
>WENV183629536
OOGP01062963
[OOGP] marine metagenome; seawater
317
393
+
fMet
CAT
[ENA]
¡û
>WENV170569580
FLMP01237087
[FLMP] seawater metagenome; seawater
317
393
+
Met
CAT
[ENA]
¡û
>WENV170708933
LNFM01000037
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18
94
+
Met
CAT
[ENA]
¡û
>WENV170711599
LNFM01005971
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18
94
+
Met
CAT
[ENA]
¡û
>WENV170713999
LNFM01050056
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1420
1496
+
Met
CAT
[ENA]
¡û
>WENV170951646
MEHZ011562456
[MEHZ] marine metagenome; marine surface water
1102
1026
-
Met
CAT
[ENA]
¡û
>C191188838
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
3720937
3720861
-
Met
CAT
-
¡û
>W1810195487
PKRO01000072
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
87
11
-
Met
CAT
[ENA]
¡û
>W2011651635
SNZF01000004
Alphaproteobacteria
Aquamicrobium defluvii DSM 11603 [SNZF]
114817
114893
+
fMet
CAT
[ENA]
¡û
>SRA1053275
SRR035098.371846
454 Sequencing (SRP001819)
296
220
-
Met
CAT
[SRA]
>W2012438597
WTYB01000001
Alphaproteobacteria
Erythromicrobium ramosum JCM 10282 [WTYB]
89963
89887
-
fMet
CAT
[ENA]
¡û
>C231161319
CP078091
Alphaproteobacteria
Porphyrobacter sp. ULC335 [CP078091]
3475972
3475896
-
fMet
CAT
-
¡û
>C161093700
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
461753
461677
-
Met
CAT
[Ensembl]
¡û
>C161093706
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
192503
192427
-
Met
CAT
[Ensembl]
¡û
>W1610084888
CDHJ01000333
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
542
466
-
Met
CAT
[ENA]
¡û
>C131005976
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
4041393
4041469
+
Met
CAT
[Ensembl]
¡û
>W1610649231
LJHV01000014
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
18597
18521
-
Met
CAT
[ENA]
¡û
>W1610753074
LNED01000022
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
22
98
+
Met
CAT
[ENA]
¡û
>W1610913006
LSIV01000098
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
72
148
+
Met
CAT
[ENA]
¡û
>W1610913261
LSJB01000341
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
9108
9184
+
Met
CAT
[ENA]
¡û
>W1610913588
LSJJ01000150
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
9116
9192
+
Met
CAT
[ENA]
¡û
>W1610913641
LSJK01000282
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
9114
9190
+
Met
CAT
[ENA]
¡û
>W1610913848
LSJQ01000127
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
5497
5421
-
Met
CAT
[ENA]
¡û
>W1610913972
LSJS01000322
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
8387
8311
-
Met
CAT
[ENA]
¡û
>W1610914249
LSJZ01000230
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
2415
2339
-
Met
CAT
[ENA]
¡û
>W1610914253
LSJZ01000238
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
9102
9178
+
Met
CAT
[ENA]
¡û
>W1610914507
LSKF01000026
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
29876
29952
+
Met
CAT
[ENA]
¡û
>W1610914849
LSKM01000197
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
5515
5439
-
Met
CAT
[ENA]
¡û
>W1610914996
LSKQ01000090
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
72
148
+
Met
CAT
[ENA]
¡û
>W1710089750
CDHJ01000333
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
542
466
-
Met
CAT
[ENA]
¡û
>W1710530103
FNOM01000034
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
5799
5875
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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