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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18620 (58 seq.)
>C013013
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4268239
4268149
-
Ser
TGA
[Ensembl]
¡û
>w013325
AANE01000021
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
155
63
-
Ser
TGA
[ENA]
¡û
>WENV180042119
LNFX01000011
[LNFX] marine sediment metagenome; antarctic beach sand mud
1920
2010
+
Ser
TGA
[ENA]
¡û
>W141191382
AYOZ01000007
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
875
785
-
Ser
TGA
[ENA]
¡û
>W141284665
JAMB01000001
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
736232
736322
+
Ser
TGA
[ENA]
¡û
>WENV183637285
OPGP01010840
[OPGP] human gut metagenome; Material from the ethmoid
122
212
+
Ser
TGA
[ENA]
¡û
>WENV170780533
MAAB01004756
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6082
6172
+
Ser
TGA
[ENA]
¡û
>C191039811
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3290426
3290336
-
Ser
TGA
-
¡û
>W09106451
AAVH01000006
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
100
12
-
Ser
TGA
[ENA]
¡û
>W1910584823
JYBL01000006
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
870
780
-
Ser
TGA
[ENA]
¡û
>W1910914874
NHTT01000007
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
211750
211840
+
Ser
TGA
[ENA]
¡û
>W1810606217
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
160506
160596
+
Ser
TGA
[ENA]
¡û
>W1810625244
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
58227
58317
+
Ser
TGA
[ENA]
¡û
>W1810676269
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
78960
79050
+
Ser
TGA
[ENA]
¡û
>W1810721694
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
132649
132559
-
Ser
TGA
[ENA]
¡û
>W1810759713
QPJQ01000024
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
34471
34381
-
Ser
TGA
[ENA]
¡û
>W1810885370
QUNG01000014
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
14233
14323
+
Ser
TGA
[ENA]
¡û
>W2010584377
JABAEK010000010
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
14951
15041
+
Ser
TGA
[ENA]
¡û
>W2010764326
JYBL01000006
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
870
780
-
Ser
TGA
[ENA]
¡û
>W2010967734
NHTT01000007
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
211750
211840
+
Ser
TGA
[ENA]
¡û
>W2011222027
PTXN01000006
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
83383
83473
+
Ser
TGA
[ENA]
¡û
>W2011431056
RIZG01000005
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
70386
70296
-
Ser
TGA
[ENA]
¡û
>W2011431115
RIZH01000009
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
88292
88382
+
Ser
TGA
[ENA]
¡û
>W2011611906
SJSB01000021
Gammaproteobacteria
Marinomonas sp. JHZ-47 [SJSB]
990
900
-
Ser
TGA
[ENA]
¡û
>W2011611936
SJSC01000002
Gammaproteobacteria
Marinomonas sp. KMM3893 [SJSC]
669738
669828
+
Ser
TGA
[ENA]
¡û
>W2011648817
SNXC01000015
Gammaproteobacteria
Marinomonas balearica CECT 7378 [SNXC]
253236
253146
-
Ser
TGA
[ENA]
¡û
>W2012132115
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
2808170
2808080
-
Ser
TGA
[ENA]
¡û
>W2110030225
BMLJ01000013
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
57902
57992
+
Ser
TGA
[ENA]
¡û
>W2110286851
JACYFC010000002
Gammaproteobacteria
Marinomonas colpomeniae SM2066 [JACYFC]
889051
889141
+
Ser
TGA
[ENA]
¡û
>W2110416454
JAEINI020000007
Gammaproteobacteria
Alishewanella sp. 16-MA [JAEINI]
14730
14820
+
Ser
TGA
[ENA]
¡û
>W2110428861
JAEMNX010000019
Gammaproteobacteria
Marinomonas sp. C1424 [JAEMNX]
52179
52089
-
Ser
TGA
[ENA]
¡û
>W2110429662
JAEMUI010000025
Gammaproteobacteria
Marinomonas spartinae USM8 [JAEMUI]
131
41
-
Ser
TGA
[ENA]
¡û
>W2110571022
JAGSSV010000009
Gammaproteobacteria
Marinomonas vulgaris A79 [JAGSSV]
75876
75786
-
Ser
TGA
[ENA]
¡û
>W2110617687
JAHLLW010000007
Gammaproteobacteria
Marinomonas sp. E165 [JAHLLW]
14747
14837
+
Ser
TGA
[ENA]
¡û
>C211142009
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
3827424
3827334
-
Ser
TGA
-
¡û
>C211155491
CP061941
Gammaproteobacteria
Marinomonas algicola SM1966 [CP061941]
3933944
3933854
-
Ser
TGA
-
¡û
>C211273598
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
1339042
1338952
-
Ser
TGA
-
¡û
>W2110716895
JAJATW010000014
Gammaproteobacteria
Marinomonas sp. E8 [JAJATW]
20056
19966
-
Ser
TGA
[ENA]
¡û
>C231056875
CP047694
Gammaproteobacteria
Marinomonas mediterranea MMB-3 (CPR1) [CP047694]
631592
631502
-
Ser
TGA
-
¡û
>C231056961
CP047695
Gammaproteobacteria
Marinomonas mediterranea MMB-2 (IVIA-Po-186) [CP047695]
633745
633655
-
Ser
TGA
-
¡û
>C231057047
CP047696
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP047696]
621999
621909
-
Ser
TGA
-
¡û
>C231129747
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
1120332
1120242
-
Ser
TGA
-
¡û
>C231130887
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
813852
813942
+
Ser
TGA
-
¡û
>C241010767
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
2899050
2898960
-
Ser
TGA
-
¡û
>C241166578
CP054301
Gammaproteobacteria
Marinomonas primoryensis MPKMM3633 [CP054301]
3287936
3287846
-
Ser
TGA
-
¡û
>C11114706
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
621998
621908
-
Ser
TGA
[Ensembl]
¡û
>C11114981
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
634603
634693
+
Ser
TGA
[Ensembl]
¡û
>W1511518499
JXYC01000004
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
768645
768735
+
Ser
TGA
[ENA]
¡û
>W1610503730
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44231
44321
+
Ser
TGA
[ENA]
¡û
>W1610504029
FLOE01000020
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
74036
74126
+
Ser
TGA
[ENA]
¡û
>W1610540025
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
70545
70455
-
Ser
TGA
[ENA]
¡û
>W1610540108
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
71255
71165
-
Ser
TGA
[ENA]
¡û
>W1610540201
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
71367
71277
-
Ser
TGA
[ENA]
¡û
>W1710496559
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
44231
44321
+
Ser
TGA
[ENA]
¡û
>W1710583958
FQVF01000011
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
717
627
-
Ser
TGA
[ENA]
¡û
>W1710643046
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
70545
70455
-
Ser
TGA
[ENA]
¡û
>W1710643129
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
71255
71165
-
Ser
TGA
[ENA]
¡û
>W1710643222
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
71367
71277
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK