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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18690 (26 seq.)
>W131063604
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
457737
457827
+
Ser
GGA
[ENA]
¡û
>W1711373533
MDVM01000003
Gammaproteobacteria
Gammaproteobacteria bacterium 2W06 [MDVM]
105000
105090
+
Ser
GGA
[ENA]
¡û
>WENV170336517
CETA01016511
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1605
1515
-
Ser
GGA
[ENA]
¡û
>WENV170486734
CEVN01358412
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1556
1646
+
Ser
GGA
[ENA]
¡û
>WENV170524253
CEWH01003271
[CEWH] marine metagenome genome assembly TARA_109_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
629
539
-
Ser
GGA
[ENA]
¡û
>WENV170680441
LFCJ01011421
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2225
2135
-
Ser
GGA
[ENA]
¡û
>WENV170802827
MDSW01020137
[MDSW] marine metagenome; seawater
26694
26604
-
Ser
GGA
[ENA]
¡û
>C181179237
CP029488
Gammaproteobacteria
Salinisphaera sp. LB1 [CP029488]
3684573
3684483
-
Ser
GGA
-
¡û
>W1910005636
AYKG01000036
Gammaproteobacteria
Salinisphaera japonica YTM-1 [AYKG]
28516
28426
-
Ser
GGA
[ENA]
¡û
>W1910005674
AYKH01000010
Gammaproteobacteria
Salinisphaera orenii MK-B5 [AYKH]
3728
3638
-
Ser
GGA
[ENA]
¡û
>W2010073824
AYKG01000036
Gammaproteobacteria
Salinisphaera japonica YTM-1 [AYKG]
28516
28426
-
Ser
GGA
[ENA]
¡û
>W2010073862
AYKH01000010
Gammaproteobacteria
Salinisphaera orenii MK-B5 [AYKH]
3728
3638
-
Ser
GGA
[ENA]
¡û
>W2010803724
MAOJ01000001
Gammaproteobacteria
Spiribacter roseus SSL4 [MAOJ]
814263
814173
-
Ser
GGA
[ENA]
¡û
>W2010803756
MAOK01000043
Gammaproteobacteria
Spiribacter roseus SSL25 [MAOK]
17703
17793
+
Ser
GGA
[ENA]
¡û
>W2010803803
MAOL01000011
Gammaproteobacteria
Spiribacter roseus SSL97 [MAOL]
83197
83107
-
Ser
GGA
[ENA]
¡û
>W2010803865
MAOM01000017
Gammaproteobacteria
Spiribacter sp. SSL99 [MAOM]
87370
87460
+
Ser
GGA
[ENA]
¡û
>W2011580783
SHLI01000001
Gammaproteobacteria
Halopeptonella vilamensis DSM 21056 [SHLI]
456073
456163
+
Ser
GGA
[ENA]
¡û
>W2012089844
VMKO01000001
Gammaproteobacteria
Halopeptonella vilamensis DSM 21056 [VMKO]
330711
330621
-
Ser
GGA
[ENA]
¡û
>W2012089893
VMKP01000004
Gammaproteobacteria
Spiribacter aquaticus SP30 [VMKP]
206705
206615
-
Ser
GGA
[ENA]
¡û
>W2110547397
JAGHQU010000006
Gammaproteobacteria
Endozoicomonas sp. G2_2 [JAGHQU]
38399
38309
-
Ser
GGA
[ENA]
¡û
>C201024535
CP016382
Gammaproteobacteria
Spiribacter roseus SSL50 [CP016382]
1051010
1050920
-
Ser
GGA
-
¡û
>W2110748330
MBFX01000002
Gammaproteobacteria
Spiribacter salinus M7-304 [MBFX]
708565
708475
-
Ser
GGA
[ENA]
¡û
>C241105077
CP046046
Gammaproteobacteria
Spiribacter sp. 2438 [CP046046]
1231518
1231428
-
Ser
GGA
-
¡û
>C241354760
CP140153
Gammaproteobacteria
Guyparkeria halophila ATCC 49870 [CP140153]
1911735
1911645
-
Ser
GGA
-
¡û
>C131016242
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
1081983
1081893
-
Ser
GGA
[Ensembl]
¡û
>W1710549069
FOEG01000001
Gammaproteobacteria
Aquisalimonas asiatica [FOEG]
745558
745648
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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