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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187628 (104 seq.)
>W131000011
ADDA01000004
Bacteroidota
Capnocytophaga granulosa ATCC 51502 [ADDA]
507900
507976
+
Arg
TCT
[ENA]
¡û
>WENV180102953
OAOZ01066952
[OAOZ] marine metagenome; ENVO:00002010
18
92
+
Arg
TCT
[ENA]
¢þ
>W141042688
AMES01000011
Bacteroidota
Capnocytophaga sp. oral taxon 380 oral taxon 380 str. F0488 [AMES]
13952
14028
+
Arg
TCT
[ENA]
¡û
>WENV180697422
ODDE01000339
[ODDE] human metagenome; G_DNA_Supragingival plaque
3481
3406
-
Arg
TCT
[ENA]
¢þ
>WENV180698701
ODDH01089099
[ODDH] human metagenome; G_DNA_Buccal mucosa
121
195
+
Arg
TCT
[ENA]
¢þ
>WENV180729055
ODGU01172581
[ODGU] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV180733842
ODGZ01000979
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2941
2867
-
Arg
TCT
[ENA]
¢þ
>WENV180735391
ODGZ01194351
[ODGZ] human metagenome; G_DNA_Supragingival plaque
93
168
+
Arg
TCT
[ENA]
¢þ
>WENV180735589
ODHB01000073
[ODHB] human metagenome; G_DNA_Supragingival plaque
25476
25401
-
Arg
TCT
[ENA]
¢þ
>WENV180751720
ODHS01124745
[ODHS] human metagenome; G_DNA_Supragingival plaque
256
330
+
Arg
TCT
[ENA]
¢þ
>WENV180751927
ODHS01270364
[ODHS] human metagenome; G_DNA_Supragingival plaque
94
168
+
Arg
TCT
[ENA]
¢þ
>WENV180768066
ODIG01002240
[ODIG] human metagenome; G_DNA_Tongue dorsum
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV180774910
ODIJ01110026
[ODIJ] human metagenome; G_DNA_Tongue dorsum
328
254
-
Arg
TCT
[ENA]
¢þ
>WENV180777868
ODIM01000012
[ODIM] human metagenome; G_DNA_Supragingival plaque
17008
17083
+
Arg
TCT
[ENA]
¢þ
>WENV180791811
ODIV01016403
[ODIV] human metagenome; G_DNA_Buccal mucosa
303
228
-
Arg
TCT
[ENA]
¢þ
>WENV180795598
ODJB01000066
[ODJB] human metagenome; G_DNA_Supragingival plaque
25289
25214
-
Arg
TCT
[ENA]
¢þ
>WENV180804429
ODJG01002783
[ODJG] human metagenome; G_DNA_Supragingival plaque
3460
3535
+
Arg
TCT
[ENA]
¢þ
>WENV180814981
ODJO01158636
[ODJO] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV180822446
ODJT01001111
[ODJT] human metagenome; G_DNA_Supragingival plaque
93
167
+
Arg
TCT
[ENA]
¢þ
>WENV180833709
ODKD01000110
[ODKD] human metagenome; G_DNA_Supragingival plaque
16984
17059
+
Arg
TCT
[ENA]
¢þ
>WENV180834830
ODKE01000031
[ODKE] human metagenome; G_DNA_Supragingival plaque
61089
61164
+
Arg
TCT
[ENA]
¢þ
>WENV180842972
ODKN01000171
[ODKN] human metagenome; G_DNA_Supragingival plaque
17009
17084
+
Arg
TCT
[ENA]
¢þ
>WENV180859562
ODLD01001399
[ODLD] human metagenome; G_DNA_Supragingival plaque
11691
11766
+
Arg
TCT
[ENA]
¢þ
>WENV180863309
ODLH01000004
[ODLH] human metagenome; G_DNA_Tongue dorsum
53500
53575
+
Arg
TCT
[ENA]
¢þ
>WENV180887586
ODMI01021718
[ODMI] human metagenome; G_DNA_Buccal mucosa
230
156
-
Arg
TCT
[ENA]
¢þ
>WENV180888045
ODMN01000022
[ODMN] human metagenome; G_DNA_Supragingival plaque
114785
114711
-
Arg
TCT
[ENA]
¢þ
>WENV180889247
ODMN01021864
[ODMN] human metagenome; G_DNA_Supragingival plaque
1250
1325
+
Arg
TCT
[ENA]
¢þ
>WENV180889850
ODMN01188535
[ODMN] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV180921433
ODTJ01000055
[ODTJ] human metagenome; G_DNA_Supragingival plaque
18420
18495
+
Arg
TCT
[ENA]
¢þ
>WENV180921937
ODTJ01000751
[ODTJ] human metagenome; G_DNA_Supragingival plaque
13972
14046
+
Arg
TCT
[ENA]
¢þ
>WENV180924470
ODTK01005585
[ODTK] human metagenome; G_DNA_Supragingival plaque
93
168
+
Arg
TCT
[ENA]
¢þ
>WENV180928578
ODTM01094302
[ODTM] human metagenome; G_DNA_Supragingival plaque
112
38
-
Arg
TCT
[ENA]
¢þ
>WENV180928712
ODTM01184195
[ODTM] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV180934313
ODTR01110144
[ODTR] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV180937972
ODTX01000311
[ODTX] human metagenome; G_DNA_Supragingival plaque
25906
25831
-
Arg
TCT
[ENA]
¢þ
>WENV180943543
ODUC01000912
[ODUC] human metagenome; G_DNA_Supragingival plaque
6322
6248
-
Arg
TCT
[ENA]
¢þ
>WENV180951060
ODUH01007671
[ODUH] human metagenome; G_DNA_Subgingival plaque
3126
3052
-
Arg
TCT
[ENA]
¢þ
>WENV180953714
ODUI01134708
[ODUI] human metagenome; G_DNA_Tongue dorsum
115
189
+
Arg
TCT
[ENA]
¢þ
>WENV180974235
ODUW01145935
[ODUW] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV180975578
ODUY01011201
[ODUY] human metagenome; G_DNA_Supragingival plaque
1049
974
-
Arg
TCT
[ENA]
¢þ
>WENV180982082
ODVE01138550
[ODVE] human metagenome; G_DNA_Supragingival plaque
237
312
+
Arg
TCT
[ENA]
¢þ
>WENV180982899
ODVF01001343
[ODVF] human metagenome; G_DNA_Supragingival plaque
12037
12112
+
Arg
TCT
[ENA]
¢þ
>WENV180986535
ODVK01000064
[ODVK] human metagenome; G_DNA_Supragingival plaque
63393
63467
+
Arg
TCT
[ENA]
¢þ
>WENV180986574
ODVK01000101
[ODVK] human metagenome; G_DNA_Supragingival plaque
55422
55347
-
Arg
TCT
[ENA]
¢þ
>WENV180986630
ODVK01000210
[ODVK] human metagenome; G_DNA_Supragingival plaque
296
221
-
Arg
TCT
[ENA]
¢þ
>WENV180986685
ODVK01000387
[ODVK] human metagenome; G_DNA_Supragingival plaque
94
169
+
Arg
TCT
[ENA]
¢þ
>WENV180992641
ODVP01076597
[ODVP] human metagenome; G_DNA_Buccal mucosa
136
211
+
Arg
TCT
[ENA]
¢þ
>WENV180998410
ODVT01000310
[ODVT] human metagenome; G_DNA_Buccal mucosa
11765
11840
+
Arg
TCT
[ENA]
¢þ
>WENV180999958
ODVT01119062
[ODVT] human metagenome; G_DNA_Buccal mucosa
112
38
-
Arg
TCT
[ENA]
¢þ
>WENV181005838
ODWA01000024
[ODWA] human metagenome; G_DNA_Buccal mucosa
12038
11964
-
Arg
TCT
[ENA]
¢þ
>WENV181010541
ODWH01048890
[ODWH] human metagenome; G_DNA_Buccal mucosa
248
173
-
Arg
TCT
[ENA]
¢þ
>WENV181020189
ODWU01068696
[ODWU] human metagenome; G_DNA_Supragingival plaque
324
250
-
Arg
TCT
[ENA]
¢þ
>WENV181042492
ODXU01000282
[ODXU] human metagenome; G_DNA_Buccal mucosa
2321
2396
+
Arg
TCT
[ENA]
¢þ
>WENV181043771
ODXV01000707
[ODXV] human metagenome; G_DNA_Tongue dorsum
20369
20444
+
Arg
TCT
[ENA]
¢þ
>WENV181051180
ODYD01242192
[ODYD] human metagenome; G_DNA_Supragingival plaque
94
168
+
Arg
TCT
[ENA]
¢þ
>WENV181052314
ODYE01107796
[ODYE] human metagenome; G_DNA_Tongue dorsum
139
214
+
Arg
TCT
[ENA]
¢þ
>WENV181059233
ODYM01000137
[ODYM] human metagenome; G_DNA_Tongue dorsum
3497
3422
-
Arg
TCT
[ENA]
¢þ
>WENV181063553
ODYP01001421
[ODYP] human metagenome; G_DNA_Supragingival plaque
3868
3942
+
Arg
TCT
[ENA]
¢þ
>WENV181065070
ODYP01270573
[ODYP] human metagenome; G_DNA_Supragingival plaque
93
168
+
Arg
TCT
[ENA]
¢þ
>WENV181068127
ODZI01130238
[ODZI] human metagenome; G_DNA_Supragingival plaque
237
312
+
Arg
TCT
[ENA]
¢þ
>WENV181069623
ODZZ01121776
[ODZZ] human metagenome; G_DNA_Tongue dorsum
134
208
+
Arg
TCT
[ENA]
¢þ
>WENV181069836
OEAE01000008
[OEAE] human metagenome; G_DNA_Supragingival plaque
179238
179163
-
Arg
TCT
[ENA]
¢þ
>WENV181077893
OEAP01215542
[OEAP] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV181081882
OEAS01462640
[OEAS] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV181084279
OEAV01124691
[OEAV] human metagenome; G_DNA_Supragingival plaque
235
310
+
Arg
TCT
[ENA]
¢þ
>WENV181084625
OEAX01000003
[OEAX] human metagenome; G_DNA_Tongue dorsum
224232
224158
-
Arg
TCT
[ENA]
¢þ
>WENV181085815
OEAX01094909
[OEAX] human metagenome; G_DNA_Tongue dorsum
92
167
+
Arg
TCT
[ENA]
¢þ
>WENV181086211
OEAY01000203
[OEAY] human metagenome; G_DNA_Tongue dorsum
2135
2210
+
Arg
TCT
[ENA]
¢þ
>WENV181090359
OEBC01000287
[OEBC] human metagenome; G_DNA_Supragingival plaque
26758
26683
-
Arg
TCT
[ENA]
¢þ
>WENV181094880
OEBY01001645
[OEBY] human metagenome; G_DNA_Tongue dorsum
13349
13274
-
Arg
TCT
[ENA]
¢þ
>WENV181101038
OECM01000566
[OECM] human metagenome; G_DNA_Buccal mucosa
3060
2985
-
Arg
TCT
[ENA]
¢þ
>WENV181115599
OEEO01156042
[OEEO] human metagenome; G_DNA_Supragingival plaque
163
88
-
Arg
TCT
[ENA]
¢þ
>WENV181121917
OEFL01031428
[OEFL] human metagenome; G_DNA_Supragingival plaque
93
168
+
Arg
TCT
[ENA]
¢þ
>WENV181130571
OEFY01025102
[OEFY] human metagenome; G_DNA_Throat
93
168
+
Arg
TCT
[ENA]
¢þ
>WENV181135706
OEGG01110108
[OEGG] human metagenome; G_DNA_Tongue dorsum
84
9
-
Arg
TCT
[ENA]
¢þ
>WENV181137210
OEGJ01000748
[OEGJ] human metagenome; G_DNA_Supragingival plaque
10321
10396
+
Arg
TCT
[ENA]
¢þ
>WENV181140673
OEGT01000040
[OEGT] human metagenome; G_DNA_Throat
67944
68019
+
Arg
TCT
[ENA]
¢þ
>WENV181143158
OEHM01000162
[OEHM] human metagenome; G_DNA_Supragingival plaque
35298
35223
-
Arg
TCT
[ENA]
¢þ
>WENV181145979
OEHQ01000354
[OEHQ] human metagenome; G_DNA_Supragingival plaque
3
78
+
Arg
TCT
[ENA]
¢þ
>WENV181146571
OEHQ01010078
[OEHQ] human metagenome; G_DNA_Supragingival plaque
625
699
+
Arg
TCT
[ENA]
¢þ
>WENV181152304
OEIA01000815
[OEIA] human metagenome; G_DNA_Supragingival plaque
3379
3454
+
Arg
TCT
[ENA]
¢þ
>WENV181152306
OEIA01000815
[OEIA] human metagenome; G_DNA_Supragingival plaque
3570
3645
+
Arg
TCT
[ENA]
¢þ
>WENV181158296
OEIH01000238
[OEIH] human metagenome; G_DNA_Supragingival plaque
652
727
+
Arg
TCT
[ENA]
¢þ
>WENV181177833
OEJS01021053
[OEJS] human metagenome; G_DNA_Supragingival plaque
112
38
-
Arg
TCT
[ENA]
¢þ
>WENV181182361
OEJV01007044
[OEJV] human metagenome; G_DNA_Supragingival plaque
3283
3208
-
Arg
TCT
[ENA]
¢þ
>W141143731
AWSR01000157
Bacteroidota
Capnocytophaga sp. oral taxon 863 oral taxon 863 str. F0517 [AWSR]
58262
58188
-
Arg
TCT
[ENA]
¡û
>WENV183508173
OMHB01004294
[OMHB] human oral metagenome; human oral
521
595
+
Arg
TCT
[ENA]
¢þ
>WENV183509172
OMHG01010691
[OMHG] human oral metagenome; human oral
424
499
+
Arg
TCT
[ENA]
¢þ
>WENV183510385
OMHO01000272
[OMHO] human oral metagenome; human oral
936
1010
+
Arg
TCT
[ENA]
¢þ
>WENV183729772
PJTR01000068
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
120391
120317
-
Arg
TCT
[ENA]
¢þ
>WENV183731092
PJTS01008660
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
510
436
-
Arg
TCT
[ENA]
¢þ
>WENV170444303
CEUX01087057
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
382
308
-
Arg
TCT
[ENA]
¢þ
>WENV170926999
MDTG01109791
[MDTG] marine metagenome; seawater
3635
3709
+
Arg
TCT
[ENA]
¢þ
>C181063832
CP022386
Bacteroidota
Capnocytophaga gingivalis H1496 [CP022386]
408860
408935
+
Arg
TCT
-
¡û
>C181224956
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
2476289
2476363
+
Arg
TCT
-
¡û
>C191182945
CP040812
Bacteroidota
Antarcticibacterium flavum KCTC 52984 [CP040812]
149563
149637
+
Arg
TCT
-
¡û
>W09108463
ABTH01000004
Bacteroidota
Capnocytophaga ochracea DSM 7271 [ABTH]
35226
35150
-
Arg
TCT
[ENA]
¡û
>W09128289
ACLQ01000019
Bacteroidota
Capnocytophaga gingivalis ATCC 33624 [ACLQ]
194551
194627
+
Arg
TCT
[ENA]
¡û
>SRA1046770
SRR035093.380340
454 Sequencing (SRP001814)
20
94
+
Arg
TCT
[SRA]
>C10103693
CP001632
Bacteroidota
Capnocytophaga ochracea DSM 7271 [CP001632]
2270919
2270843
-
Arg
TCT
[Ensembl]
¡û
>W11152355
AEXX01000039
Bacteroidota
Capnocytophaga sp. oral taxon 338 oral taxon 338 str. F0234 [AEXX]
18136
18212
+
Arg
TCT
[ENA]
¡û
>C161068900
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
2076532
2076456
-
Arg
TCT
[Ensembl]
¡û
>W1710528339
FNND01000001
Bacteroidota
Capnocytophaga granulosa [FNND]
504598
504674
+
Arg
TCT
[ENA]
¡û
>W1710571427
FOVX01000004
Bacteroidota
Capnocytophaga haemolytica [FOVX]
168344
168268
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK