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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188386 (12 seq.)
>A171000370
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
335886
335812
-
Lys
CTT
-
¡û
>A171001347
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
197889
197815
-
Lys
CTT
-
¡û
>A171002407
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
46095
46171
+
Lys
CTT
-
¡û
>A171003240
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
1339642
1339568
-
Lys
CTT
-
¡û
>WENV181285462
OFGS01000604
[OFGS] hot springs metagenome; Water and soil
4987
5061
+
Lys
CTT
[ENA]
¢þ
>At0021
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
236428
236316
-
Lys
CTT
[Ensembl]
¡û
>At2206
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
557836
557944
+
Lys
CTT
[Ensembl]
¡û
>At2231
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
1057036
1056928
-
Lys
CTT
[Ensembl]
¡û
>SRA1006155
SRR016610.106656
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
137
213
+
Lys
CTT
[SRA]
>SRA1006169
SRR016610.131599
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
35
111
+
Lys
CTT
[SRA]
>W1610004223
AGIW01000001
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [AGIW]
742295
742221
-
Lys
CTT
[ENA]
¡û
>W1610040452
AZUU01000001
Thermoproteota
Desulfurococcus amylolyticus Z-533 [AZUU]
495802
495876
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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