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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19670 (19 seq.)
>W1710901189
LNKT01000008
Campylobacterota
Sulfurovum riftiae [LNKT]
3789
3879
+
Ser
GCT
[ENA]
¡û
>WENV180287138
OBIK01000005
[OBIK] hydrothermal vent metagenome; sea water
24654
24744
+
Ser
GCT
[ENA]
¡û
>WENV180287498
OBIK01086719
[OBIK] hydrothermal vent metagenome; sea water
128
218
+
Ser
GCT
[ENA]
¡û
>WENV180581688
OCMK01039190
[OCMK] metagenome; diffuse fluid
168
78
-
Ser
GCT
[ENA]
¡û
>WENV181224591
OFDG01000035
[OFDG] metagenome; hydrothermal vent
6821
6731
-
Ser
GCT
[ENA]
¡û
>WENV181412557
OGCK01001536
[OGCK] hot springs metagenome; hot spring sediment
3875
3965
+
Ser
GCT
[ENA]
¡û
>C08010642
AP009179
Campylobacterota
Sulfurovum sp. NBC37-1 [AP009179]
703018
703108
+
Ser
GCT
[Ensembl]
¡û
>WENV183515089
OMKS01045491
[OMKS] sediment metagenome; hot spring sediment
1613
1523
-
Ser
GCT
[ENA]
¡û
>WENV170000992
AGBJ01000228
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
93
3
-
Ser
GCT
[ENA]
¡û
>WENV170575749
FPHL01000053
[FPHL] hydrothermal vent metagenome genome assembly, contig: NODE_42.; water
1238
1148
-
Ser
GCT
[ENA]
¡û
>C151079546
CP011308
Campylobacterota
Sulfurovum lithotrophicum ATCC BAA-797 [CP011308]
1041641
1041731
+
Ser
GCT
[Ensembl]
¡û
>W2110070307
BPFI01000001
Campylobacterota
Sulfurovum sp. TSL1 [BPFI]
771161
771071
-
Ser
GCT
[ENA]
¡û
>W2110070325
BPFJ01000001
Campylobacterota
Sulfurovum sp. TSL6 [BPFJ]
874602
874512
-
Ser
GCT
[ENA]
¡û
>C211172811
CP063164
Campylobacterota
Sulfurovum indicum ST-419 [CP063164]
993182
993272
+
Ser
GCT
-
¡û
>C231331381
CP093312
Campylobacterota
Sulfurovum sp. XGS-02 [CP093312]
1304897
1304807
-
Ser
GCT
-
¡û
>C241356604
CP140614
Campylobacterota
Sulfurospirillum sp. 1612 [CP140614]
1921491
1921401
-
Ser
GCT
-
¡û
>W1511327923
JQIS01000025
Campylobacterota
Sulfurovum sp. FS08-3 [JQIS]
1669
1579
-
Ser
GCT
[ENA]
¡û
>W121063608
AJLE01000003
Campylobacterota
Sulfurovum sp. AR [AJLE]
189777
189687
-
Ser
GCT
[ENA]
¡û
>W1610760560
LNKT01000008
Campylobacterota
Sulfurovum riftiae [LNKT]
3789
3879
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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