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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200202 (50 seq.)
>A178000039
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1941049
1941145
+
Lys
CTT
-
¡û
>A178000049
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1809605
1809701
+
Lys
CTT
-
¡û
>A178000059
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1913633
1913729
+
Lys
CTT
-
¡û
>A178000069
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1813865
1813961
+
Lys
CTT
-
¡û
>A178000079
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1879268
1879364
+
Lys
CTT
-
¡û
>A178000084
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
746454
746358
-
Lys
CTT
-
¡û
>A178000105
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1065727
1065631
-
Lys
CTT
-
¡û
>A178000193
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1707449
1707545
+
Lys
CTT
-
¡û
>A178000203
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1843498
1843594
+
Lys
CTT
-
¡û
>A178000358
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1678998
1679094
+
Lys
CTT
-
¡û
>A178000526
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1123890
1123794
-
Lys
CTT
-
¡û
>A178000536
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1123893
1123797
-
Lys
CTT
-
¡û
>A178000546
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1123917
1123821
-
Lys
CTT
-
¡û
>A178000621
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
141508
141599
+
Lys
CTT
-
¡û
>A178000638
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
141508
141599
+
Lys
CTT
-
¡û
>A178000685
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
896404
896498
+
Lys
CTT
-
¡û
>A178000713
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
1663010
1663100
+
Lys
CTT
-
¡û
>A178000743
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
139413
139317
-
Lys
CTT
-
¡û
>A177000068
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
1663010
1663097
+
Lys
CTT
-
¡û
>A213000010
AP024596
Thermoproteota
Sulfolobales archaeon HS-7 [AP024596]
1829335
1829248
-
Lys
CTT
-
¡û
>A213000040
CP050869
Thermoproteota
Saccharolobus solfataricus POZ149 [CP050869]
2333697
2333601
-
Lys
CTT
-
¡û
>A213000096
CP077713
Thermoproteota
Saccharolobus shibatae S38A [CP077713]
86721
86817
+
Lys
CTT
-
¡û
>A213000103
CP077715
Thermoproteota
Saccharolobus shibatae BEU9 [CP077715]
124412
124508
+
Lys
CTT
-
¡û
>A213000110
CP077717
Thermoproteota
Saccharolobus shibatae B12 [CP077717]
84278
84374
+
Lys
CTT
-
¡û
>A243000012
AHJK01000001
Thermoproteota
Sulfolobus islandicus M.16.2 [AHJK01000001]
1858073
1858169
+
Lys
CTT
-
¡û
>A243000028
AHJO01000001
Thermoproteota
Sulfolobus islandicus M.16.23 [AHJO01000001]
1827557
1827653
+
Lys
CTT
-
¡û
>A243000044
AHJQ01000001
Thermoproteota
Sulfolobus islandicus M.16.40 [AHJQ01000001]
1845433
1845529
+
Lys
CTT
-
¡û
>A243000060
AHJR01000001
Thermoproteota
Sulfolobus islandicus M.16.43 [AHJR01000001]
1809062
1809158
+
Lys
CTT
-
¡û
>A243000076
AHJT01000001
Thermoproteota
Sulfolobus islandicus M.16.47 [AHJT01000001]
1860237
1860333
+
Lys
CTT
-
¡û
>A243000265
CP029288
Thermoproteota
Acidianus sulfidivorans JP7 [CP029288]
1410534
1410623
+
Lys
CTT
-
¡û
>A243000299
CP029289
Thermoproteota
Acidianus brierleyi DSM 1651 [CP029289]
1254191
1254103
-
Lys
CTT
-
¡û
>A243000384
CP033235
Thermoproteota
Saccharolobus solfataricus SULG [CP033235]
1065727
1065631
-
Lys
CTT
-
¡û
>A243000400
CP033238
Thermoproteota
Saccharolobus solfataricus SULM [CP033238]
1065727
1065631
-
Lys
CTT
-
¡û
>A243000416
CP033241
Thermoproteota
Saccharolobus solfataricus SUL120 [CP033241]
1127234
1127138
-
Lys
CTT
-
¡û
>A243000772
CP135238
Thermoproteota
Sulfuracidifex metallicus DSM 6482 = JCM 9184 [CP135238]
2137259
2137159
-
Lys
CTT
-
¡û
>C236000216
AP025226
Thermoproteota
Saccharolobus caldissimus JCM32116 [AP025226]
62547
62452
-
Lys
CTT
-
¡û
>C233000919
CP046616
Thermoproteota
Sulfolobus islandicus HVE 10/4 [CP046616]
2101386
2101290
-
Lys
CTT
-
¡û
>W2010754451
JFZT01000045
Thermoproteota
Candidatus Acidianus copahuensis copahuensis ALE1 [JFZT]
49080
48988
-
Lys
CTT
[ENA]
¡û
>W2010766168
JZWS01000018
Thermoproteota
Candidatus Aramenus sulfurataquae AZ1 [JZWS]
15672
15767
+
Lys
CTT
[ENA]
¡û
>W2011248958
QFVV01000086
Thermoproteota
Sulfolobus sp. A20-N-G8 [QFVV]
136
42
-
Lys
CTT
[ENA]
¡û
>W2011248983
QFVW01000009
Thermoproteota
Sulfolobus sp. A20-N-F8 [QFVW]
39173
39267
+
Lys
CTT
[ENA]
¡û
>W2011249069
QFVX01000104
Thermoproteota
Sulfolobus sp. A20-N-F6 [QFVX]
3703
3797
+
Lys
CTT
[ENA]
¡û
>W2011249092
QFVY01000063
Thermoproteota
Sulfolobus sp. D5 [QFVY]
495
401
-
Lys
CTT
[ENA]
¡û
>W2011249116
QFVZ01000120
Thermoproteota
Sulfolobus sp. B5 [QFVZ]
2490
2584
+
Lys
CTT
[ENA]
¡û
>W2011249143
QFWB01000046
Thermoproteota
Sulfolobus sp. C3 [QFWB]
2954
2860
-
Lys
CTT
[ENA]
¡û
>W2011249163
QFWC01000060
Thermoproteota
Sulfolobus sp. F3 [QFWC]
703
609
-
Lys
CTT
[ENA]
¡û
>W2011249189
QFWE01000062
Thermoproteota
Sulfolobus sp. F1 [QFWE]
11906
12000
+
Lys
CTT
[ENA]
¡û
>W2011249200
QFWF01000014
Thermoproteota
Sulfolobus sp. E1 [QFWF]
180
86
-
Lys
CTT
[ENA]
¡û
>W2030031131
QEFG01000048
Thermoproteota
Sulfolobus islandicus [QEFG]
10453
10549
+
Lys
CTT
[ENA]
¡û
>W2030064822
WGGD01000005
Thermoproteota
Sulfuracidifex metallicus DSM 6482 = JCM 9184 [WGGD]
766943
767043
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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