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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20267 (23 seq.)
>W131109483
APHV01000384
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
8584
8674
+
Ser
GGA
[ENA]
¡û
>W131223622
AUCF01000003
Alphaproteobacteria
Azospirillum halopraeferens DSM 3675 [AUCF]
113666
113576
-
Ser
GGA
[ENA]
¡û
>WENV183727114
PJTO01005455
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
1560
1470
-
Ser
GGA
[ENA]
¢þ
>C181063165
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
1206358
1206268
-
Ser
GGA
-
¡û
>C181177418
CP029353
Alphaproteobacteria
Azospirillum thermophilum CFH 70021 [CP029352, CP029353, CP029354, CP029355]
633822
633912
+
Ser
GGA
-
¡û
>W141520256
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
2804077
2803987
-
Ser
GGA
[ENA]
¡û
>C191087915
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
2501428
2501518
+
Ser
GGA
-
¡û
>C191088030
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
2380305
2380395
+
Ser
GGA
-
¡û
>C191088073
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
2064001
2064091
+
Ser
GGA
-
¡û
>W1910613057
LGQV01000089
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
20249
20339
+
Ser
GGA
[ENA]
¡û
>W1910613269
LGQZ01000011
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
52280
52370
+
Ser
GGA
[ENA]
¡û
>W1910613424
LGRK01000083
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
75324
75234
-
Ser
GGA
[ENA]
¡û
>W1911138091
NOWT01000007
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
55415
55505
+
Ser
GGA
[ENA]
¡û
>W1911768767
QXHE01000026
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
47326
47236
-
Ser
GGA
[ENA]
¡û
>W1810222240
POQV01000005
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
31534
31624
+
Ser
GGA
[ENA]
¡û
>W1810223524
POTD01000004
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
30924
31014
+
Ser
GGA
[ENA]
¡û
>W1810226119
POWG01000035
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
15184
15094
-
Ser
GGA
[ENA]
¡û
>W1810692602
QLKQ01000082
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
28971
29061
+
Ser
GGA
[ENA]
¡û
>C151034761
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
2484974
2484884
-
Ser
GGA
[Ensembl]
¡û
>C121017715
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
2858608
2858518
-
Ser
GGA
[Ensembl]
¡û
>C161047355
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
674049
674139
+
Ser
GGA
[Ensembl]
¡û
>W1710626673
JPIR01000015
Alphaproteobacteria
Azospirillum brasilense [JPIR]
306851
306761
-
Ser
GGA
[ENA]
¡û
>W1710626745
JPIS01000018
Alphaproteobacteria
Azospirillum brasilense [JPIS]
30219
30309
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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