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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20356 (91 seq.)
>W1711388620
MEHX01000005
Bacteroidota
Tannerella forsythia [MEHX]
17680
17592
-
Ser
GGA
[ENA]
¡û
>C171055565
CP017038
Bacteroidota
Tannerella serpentiformis W11667 [CP017038]
2028734
2028644
-
Ser
GGA
-
¡û
>WENV180719848
ODGJ01007148
[ODGJ] human metagenome; G_DNA_Tongue dorsum
969
881
-
Ser
GGA
[ENA]
¢þ
>WENV180724812
ODGR01002927
[ODGR] human metagenome; G_DNA_Tongue dorsum
4989
4901
-
Ser
GGA
[ENA]
¢þ
>WENV180727277
ODGU01003813
[ODGU] human metagenome; G_DNA_Supragingival plaque
3826
3738
-
Ser
GGA
[ENA]
¢þ
>WENV180727437
ODGU01005465
[ODGU] human metagenome; G_DNA_Supragingival plaque
3053
3141
+
Ser
GGA
[ENA]
¢þ
>WENV180731614
ODGW01003491
[ODGW] human metagenome; G_DNA_Supragingival plaque
1941
1853
-
Ser
GGA
[ENA]
¢þ
>WENV180735009
ODGZ01047905
[ODGZ] human metagenome; G_DNA_Supragingival plaque
602
690
+
Ser
GGA
[ENA]
¢þ
>WENV180750834
ODHS01009856
[ODHS] human metagenome; G_DNA_Supragingival plaque
1351
1439
+
Ser
GGA
[ENA]
¢þ
>WENV180765383
ODIB01127378
[ODIB] human metagenome; G_DNA_Supragingival plaque
182
94
-
Ser
GGA
[ENA]
¢þ
>WENV180768014
ODIG01001882
[ODIG] human metagenome; G_DNA_Tongue dorsum
3454
3542
+
Ser
GGA
[ENA]
¢þ
>WENV180768093
ODIG01002437
[ODIG] human metagenome; G_DNA_Tongue dorsum
4404
4492
+
Ser
GGA
[ENA]
¢þ
>WENV180787984
ODIS01024586
[ODIS] human metagenome; G_DNA_Supragingival plaque
881
793
-
Ser
GGA
[ENA]
¢þ
>WENV180791261
ODIT01191994
[ODIT] human metagenome; G_DNA_Tongue dorsum
140
52
-
Ser
GGA
[ENA]
¢þ
>WENV180796669
ODJB01009442
[ODJB] human metagenome; G_DNA_Supragingival plaque
2955
3043
+
Ser
GGA
[ENA]
¢þ
>WENV180804451
ODJG01003013
[ODJG] human metagenome; G_DNA_Supragingival plaque
3497
3409
-
Ser
GGA
[ENA]
¢þ
>WENV180808452
ODJK01000065
[ODJK] human metagenome; G_DNA_Subgingival plaque
17487
17399
-
Ser
GGA
[ENA]
¢þ
>WENV180808903
ODJK01001754
[ODJK] human metagenome; G_DNA_Subgingival plaque
3029
3117
+
Ser
GGA
[ENA]
¢þ
>WENV180813713
ODJO01001883
[ODJO] human metagenome; G_DNA_Supragingival plaque
6654
6566
-
Ser
GGA
[ENA]
¢þ
>WENV180815411
ODJP01000329
[ODJP] human metagenome; G_DNA_Tongue dorsum
23858
23946
+
Ser
GGA
[ENA]
¢þ
>WENV180835417
ODKE01003117
[ODKE] human metagenome; G_DNA_Supragingival plaque
3037
3125
+
Ser
GGA
[ENA]
¢þ
>WENV180843837
ODKN01014033
[ODKN] human metagenome; G_DNA_Supragingival plaque
671
759
+
Ser
GGA
[ENA]
¢þ
>WENV180846514
ODKT01013174
[ODKT] human metagenome; G_DNA_Supragingival plaque
309
397
+
Ser
GGA
[ENA]
¢þ
>WENV180852752
ODKW01005276
[ODKW] human metagenome; G_DNA_Tongue dorsum
2845
2757
-
Ser
GGA
[ENA]
¢þ
>WENV180859774
ODLD01004213
[ODLD] human metagenome; G_DNA_Supragingival plaque
2514
2602
+
Ser
GGA
[ENA]
¢þ
>WENV180861410
ODLE01003588
[ODLE] human metagenome; G_DNA_Tongue dorsum
3678
3590
-
Ser
GGA
[ENA]
¢þ
>WENV180882583
ODMC01000163
[ODMC] human metagenome; G_DNA_Tongue dorsum
44429
44517
+
Ser
GGA
[ENA]
¢þ
>WENV180899852
ODOJ01000084
[ODOJ] human metagenome; G_DNA_Tongue dorsum
66136
66224
+
Ser
GGA
[ENA]
¢þ
>WENV180921486
ODTJ01000074
[ODTJ] human metagenome; G_DNA_Supragingival plaque
89514
89426
-
Ser
GGA
[ENA]
¢þ
>WENV180931193
ODTP01001954
[ODTP] human metagenome; G_DNA_Tongue dorsum
6478
6390
-
Ser
GGA
[ENA]
¢þ
>WENV180938986
ODTX01011471
[ODTX] human metagenome; G_DNA_Supragingival plaque
124
212
+
Ser
GGA
[ENA]
¢þ
>WENV180943906
ODUC01004025
[ODUC] human metagenome; G_DNA_Supragingival plaque
3565
3653
+
Ser
GGA
[ENA]
¢þ
>WENV180948568
ODUG01002103
[ODUG] human metagenome; G_DNA_Tongue dorsum
6469
6381
-
Ser
GGA
[ENA]
¢þ
>WENV180950771
ODUH01001543
[ODUH] human metagenome; G_DNA_Subgingival plaque
4786
4874
+
Ser
GGA
[ENA]
¢þ
>WENV180956518
ODUK01001597
[ODUK] human metagenome; G_DNA_Stool
731
819
+
Ser
GGA
[ENA]
¢þ
>WENV180964144
ODUO01000348
[ODUO] human metagenome; G_DNA_Supragingival plaque
10498
10410
-
Ser
GGA
[ENA]
¢þ
>WENV180968096
ODUT01009279
[ODUT] human metagenome; G_DNA_Tongue dorsum
712
624
-
Ser
GGA
[ENA]
¢þ
>WENV180975317
ODUY01004442
[ODUY] human metagenome; G_DNA_Supragingival plaque
1410
1498
+
Ser
GGA
[ENA]
¢þ
>WENV180981580
ODVE01032333
[ODVE] human metagenome; G_DNA_Supragingival plaque
704
792
+
Ser
GGA
[ENA]
¢þ
>WENV180985285
ODVJ01002070
[ODVJ] human metagenome; G_DNA_Tongue dorsum
3108
3196
+
Ser
GGA
[ENA]
¢þ
>WENV180998803
ODVT01002126
[ODVT] human metagenome; G_DNA_Buccal mucosa
3083
3171
+
Ser
GGA
[ENA]
¢þ
>WENV181002894
ODVX01002576
[ODVX] human metagenome; G_DNA_Supragingival plaque
6787
6699
-
Ser
GGA
[ENA]
¢þ
>WENV181008527
ODWE01007011
[ODWE] human metagenome; G_DNA_Supragingival plaque
968
1056
+
Ser
GGA
[ENA]
¢þ
>WENV181019118
ODWU01000664
[ODWU] human metagenome; G_DNA_Supragingival plaque
3090
3178
+
Ser
GGA
[ENA]
¢þ
>WENV181033430
ODXN01007590
[ODXN] human metagenome; G_DNA_Tongue dorsum
3481
3393
-
Ser
GGA
[ENA]
¢þ
>WENV181038818
ODXQ01004995
[ODXQ] human metagenome; G_DNA_Tongue dorsum
3129
3217
+
Ser
GGA
[ENA]
¢þ
>WENV181042656
ODXU01002475
[ODXU] human metagenome; G_DNA_Buccal mucosa
2980
3068
+
Ser
GGA
[ENA]
¢þ
>WENV181044700
ODXV01025402
[ODXV] human metagenome; G_DNA_Tongue dorsum
476
388
-
Ser
GGA
[ENA]
¢þ
>WENV181064072
ODYP01009171
[ODYP] human metagenome; G_DNA_Supragingival plaque
3057
3145
+
Ser
GGA
[ENA]
¢þ
>WENV181067023
ODZI01004982
[ODZI] human metagenome; G_DNA_Supragingival plaque
679
767
+
Ser
GGA
[ENA]
¢þ
>WENV181075869
OEAP01000528
[OEAP] human metagenome; G_DNA_Supragingival plaque
13337
13425
+
Ser
GGA
[ENA]
¢þ
>WENV181079355
OEAS01005158
[OEAS] human metagenome; G_DNA_Supragingival plaque
2009
2097
+
Ser
GGA
[ENA]
¢þ
>WENV181079487
OEAS01007530
[OEAS] human metagenome; G_DNA_Supragingival plaque
2179
2091
-
Ser
GGA
[ENA]
¢þ
>WENV181090474
OEBC01000595
[OEBC] human metagenome; G_DNA_Supragingival plaque
17487
17399
-
Ser
GGA
[ENA]
¢þ
>WENV181094668
OEBY01000673
[OEBY] human metagenome; G_DNA_Tongue dorsum
18114
18202
+
Ser
GGA
[ENA]
¢þ
>WENV181097235
OECA01004316
[OECA] human metagenome; G_DNA_Tongue dorsum
3338
3250
-
Ser
GGA
[ENA]
¢þ
>WENV181103236
OECT01049034
[OECT] human metagenome; G_DNA_Tongue dorsum
271
183
-
Ser
GGA
[ENA]
¢þ
>WENV181107587
OEEI01013060
[OEEI] human metagenome; G_DNA_Supragingival plaque
54
142
+
Ser
GGA
[ENA]
¢þ
>WENV181113787
OEEL01115463
[OEEL] human metagenome; G_DNA_Tongue dorsum
191
103
-
Ser
GGA
[ENA]
¢þ
>WENV181121993
OEFL01042505
[OEFL] human metagenome; G_DNA_Supragingival plaque
546
634
+
Ser
GGA
[ENA]
¢þ
>WENV181137433
OEGJ01003677
[OEGJ] human metagenome; G_DNA_Supragingival plaque
2936
2848
-
Ser
GGA
[ENA]
¢þ
>WENV181150441
OEHW01002678
[OEHW] human metagenome; G_DNA_Tongue dorsum
3067
3155
+
Ser
GGA
[ENA]
¢þ
>WENV181177560
OEJS01004965
[OEJS] human metagenome; G_DNA_Supragingival plaque
2931
3019
+
Ser
GGA
[ENA]
¢þ
>WENV181451660
OGDY01011075
[OGDY] metagenome; Human gut stool
2996
3084
+
Ser
GGA
[ENA]
¢þ
>WENV181532240
OGHO01058430
[OGHO] metagenome; Human gut stool
779
691
-
Ser
GGA
[ENA]
¢þ
>W141195593
AYUF01000492
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 2 [AYUF]
76178
76088
-
Ser
GGA
[ENA]
¡û
>W141200604
AYYC01000522
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 5 [AYYC]
26951
27041
+
Ser
GGA
[ENA]
¡û
>W141200646
AYYD01000915
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 6/7/9 [AYYD]
250
160
-
Ser
GGA
[ENA]
¡û
>W141200679
AYYD01001288
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 6/7/9 [AYYD]
250
160
-
Ser
GGA
[ENA]
¡û
>W141200713
AYYE01001243
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 1/3 [AYYE]
6077
6167
+
Ser
GGA
[ENA]
¡û
>W141200749
AYYF01001591
Bacteroidota
Tannerella serpentiformis oral taxon BU063 isolate Cell 8/11 [AYYF]
6504
6414
-
Ser
GGA
[ENA]
¡û
>W141227016
BAKR01000025
Bacteroidota
Porphyromonas cangingivalis JCM 15983 [BAKR]
6978
7066
+
Ser
GGA
[ENA]
¡û
>WENV182615699
OJKC01006668
[OJKC] metagenome; faeces
3593
3681
+
Ser
GGA
[ENA]
¢þ
>WENV182885470
OKSC01008060
[OKSC] human gut metagenome; faeces
700
788
+
Ser
GGA
[ENA]
¢þ
>WENV183764533
PPYE01319948
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
22957
22869
-
Ser
GGA
[ENA]
¢þ
>C191213103
LR134506
Bacteroidota
Porphyromonas cangingivalis NCTC12856 [LR134506]
35859
35947
+
Ser
GGA
-
¡û
>W1910217542
FMML01000026
Bacteroidota
Tannerella forsythia UB22 [FMML]
53046
53134
+
Ser
GGA
[ENA]
¡û
>W1910217582
FMMM01000031
Bacteroidota
Tannerella forsythia UB20 [FMMM]
53039
53127
+
Ser
GGA
[ENA]
¡û
>W1910217620
FMMN01000031
Bacteroidota
Tannerella forsythia UB4 [FMMN]
53027
53115
+
Ser
GGA
[ENA]
¡û
>W1910748140
MIQB01000040
Bacteroidota
Tannerella sp. oral taxon 808 [MIQB]
11176
11088
-
Ser
GGA
[ENA]
¡û
>W1910748169
MIQC01000015
Bacteroidota
Tannerella sp. oral taxon 808 [MIQC]
6771
6683
-
Ser
GGA
[ENA]
¡û
>W1910748202
MIQD01000009
Bacteroidota
Tannerella sp. oral taxon 808 [MIQD]
35624
35712
+
Ser
GGA
[ENA]
¡û
>W1911247291
NSLJ01000015
Bacteroidota
Tannerella forsythia WW11663 [NSLJ]
61338
61426
+
Ser
GGA
[ENA]
¡û
>W1911247339
NSLK01000018
Bacteroidota
Tannerella forsythia WW10960 [NSLK]
53024
53112
+
Ser
GGA
[ENA]
¡û
>W1511328301
JQJD01000001
Bacteroidota
Porphyromonas cangingivalis COT-109 OH1386 [JQJD]
108990
108902
-
Ser
GGA
[ENA]
¡û
>W1511328415
JQJF01000017
Bacteroidota
Porphyromonas cangingivalis COT-109 OH1379 [JQJF]
54356
54268
-
Ser
GGA
[ENA]
¡û
>W1511430535
JUET01000129
Bacteroidota
Tannerella forsythia ATCC 43037 [JUET]
97847
97935
+
Ser
GGA
[ENA]
¡û
>C121007771
CP003191
Bacteroidota
Tannerella forsythia 92A2 [CP003191]
1036130
1036218
+
Ser
GGA
[Ensembl]
¡û
>C161000149
AP013044
Bacteroidota
Tannerella forsythia 3313 [AP013044]
1017131
1017219
+
Ser
GGA
-
¡û
>C161000217
AP013045
Bacteroidota
Tannerella forsythia KS16 [AP013045]
1365242
1365154
-
Ser
GGA
[Ensembl]
¡û
>W1710600455
FUWL01000023
Bacteroidota
Porphyromonas cangingivalis [FUWL]
7323
7411
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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