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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20544 (30 seq.)
>W1711312284
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
6435
6525
+
Ser
GCT
[ENA]
¡û
>W1711510595
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
6074
6164
+
Ser
GCT
[ENA]
¡û
>W1711926256
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6677
6767
+
Ser
GCT
[ENA]
¡û
>W1711926288
NADJ01000038
Bacillota
Desulfosporosinus sp. FKB [NADJ]
121530
121440
-
Ser
GCT
[ENA]
¡û
>W1711932742
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1114
1024
-
Ser
GCT
[ENA]
¡û
>W1711932770
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
184199
184289
+
Ser
GCT
[ENA]
¡û
>WENV183673789
ORJL011317769
[ORJL] groundwater metagenome; groundwater
1492
1582
+
Ser
GCT
[ENA]
¢þ
>WENV170658863
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
1589
1499
-
Ser
GCT
[ENA]
¢þ
>WENV170658869
JUEG02001270
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
222954
222864
-
Ser
GCT
[ENA]
¢þ
>WENV170690290
LFRM01333756
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
122
212
+
Ser
GCT
[ENA]
¢þ
>W1511187152
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
22472
22562
+
Ser
GCT
[ENA]
¡û
>W1511187164
JMGA01000080
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
1125
1215
+
Ser
GCT
[ENA]
¡û
>C11120652
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2269915
2269825
-
Ser
GCT
[Ensembl]
¡û
>W1511533702
JYNH01000154
Bacillota
Desulfosporosinus sp. I2 [JYNH]
9992
10082
+
Ser
GCT
[ENA]
¡û
>W1511645995
LDZY01000001
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
70294
70204
-
Ser
GCT
[ENA]
¡û
>W1511646046
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
5437
5527
+
Ser
GCT
[ENA]
¡û
>W11177301
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
1133
1043
-
Ser
GCT
[ENA]
¡û
>W11181328
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
111681
111591
-
Ser
GCT
[ENA]
¡û
>W11181377
AGJA01000017
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
1481
1391
-
Ser
GCT
[ENA]
¡û
>C121005936
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
108653
108743
+
Ser
GCT
[Ensembl]
¡û
>C121014776
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
102643
102733
+
Ser
GCT
[Ensembl]
¡û
>C121014826
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3014723
3014633
-
Ser
GCT
[Ensembl]
¡û
>C121014853
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
103978
104068
+
Ser
GCT
[Ensembl]
¡û
>C121014889
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2952485
2952395
-
Ser
GCT
[Ensembl]
¡û
>W121036126
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
125158
125248
+
Ser
GCT
[ENA]
¡û
>W121010465
AGJG01000012
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
133636
133546
-
Ser
GCT
[ENA]
¡û
>W121010496
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
3754
3844
+
Ser
GCT
[ENA]
¡û
>W121036179
AHLV01000003
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
79128
79038
-
Ser
GCT
[ENA]
¡û
>W1710516490
FNCP01000032
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
48601
48511
-
Ser
GCT
[ENA]
¡û
>W1710516514
FNCP01000054
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
1445
1355
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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