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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205466 (90 seq.)
>W1710860501
LMCX01000002
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
594680
594756
+
Met
CAT
[ENA]
¡û
>W1710881125
LMSV01000002
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
587617
587693
+
Met
CAT
[ENA]
¡û
>W1711357532
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
1702636
1702710
+
Met
CAT
[ENA]
¡û
>W1711505416
MKVM01000001
Actinomycetota
Micrococcales bacterium 72-143 [MKVM]
430852
430776
-
Met
CAT
[ENA]
¡û
>C171111603
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
2118732
2118658
-
Met
CAT
-
¡û
>WENV180367499
OBOE01118330
[OBOE] marine metagenome; ENVO:00002010
390
316
-
Ile2
CAT
[ENA]
¡û
>WENV180395187
OBPT01003379
[OBPT] marine metagenome; ENVO:00002010 seawater
2335
2410
+
Ile2
CAT
[ENA]
¡û
>WENV182540381
OJAJ01000019
[OJAJ] seawater metagenome; Sea water
1176
1250
+
Ile2
CAT
[ENA]
¡û
>WENV182540859
OJAQ01000108
[OJAQ] seawater metagenome; Sea water
330
255
-
Ile2
CAT
[ENA]
¡û
>WENV182544324
OJBF01006209
[OJBF] seawater metagenome; Sea water
610
684
+
Ile2
CAT
[ENA]
¡û
>WENV182550010
OJBZ01001640
[OJBZ] seawater metagenome; Sea water
5513
5587
+
Ile2
CAT
[ENA]
¡û
>WENV182553583
OJCR01012986
[OJCR] seawater metagenome; Sea water
347
272
-
Ile2
CAT
[ENA]
¡û
>WENV182554117
OJCT01001593
[OJCT] seawater metagenome; Sea water
1618
1692
+
Ile2
CAT
[ENA]
¡û
>WENV182558529
OJDM01011181
[OJDM] seawater metagenome; Sea water
562
637
+
Ile2
CAT
[ENA]
¡û
>WENV182561582
OJDX01000012
[OJDX] seawater metagenome; Sea water
39961
39887
-
Ile2
CAT
[ENA]
¡û
>WENV182561951
OJDY01000264
[OJDY] seawater metagenome; Sea water
5925
5999
+
Ile2
CAT
[ENA]
¡û
>WENV182562657
OJEA01000015
[OJEA] seawater metagenome; Sea water
4302
4376
+
Ile2
CAT
[ENA]
¡û
>WENV182563033
OJEB01000005
[OJEB] seawater metagenome; Sea water
16840
16914
+
Ile2
CAT
[ENA]
¡û
>WENV182564219
OJEE01000652
[OJEE] seawater metagenome; Sea water
4400
4475
+
Ile2
CAT
[ENA]
¡û
>WENV182568991
OJEY01000005
[OJEY] seawater metagenome; Sea water
60614
60540
-
Ile2
CAT
[ENA]
¡û
>WENV182569810
OJFB01000686
[OJFB] seawater metagenome; Sea water
8119
8193
+
Ile2
CAT
[ENA]
¡û
>WENV182571147
OJFG01000695
[OJFG] seawater metagenome; Sea water
4805
4880
+
Ile2
CAT
[ENA]
¡û
>WENV182574627
OJFS01000172
[OJFS] seawater metagenome; Sea water
4935
5009
+
Ile2
CAT
[ENA]
¡û
>WENV182576758
OJFY01005564
[OJFY] seawater metagenome; Sea water
808
882
+
Ile2
CAT
[ENA]
¡û
>WENV182578104
OJGM01002072
[OJGM] seawater metagenome; Sea water
2196
2270
+
Ile2
CAT
[ENA]
¡û
>WENV182580981
OJGW01042396
[OJGW] seawater metagenome; Sea water
605
680
+
Ile2
CAT
[ENA]
¡û
>WENV182582111
OJHA01000052
[OJHA] seawater metagenome; Sea water
165
91
-
Ile2
CAT
[ENA]
¡û
>WENV182582385
OJHB01000018
[OJHB] seawater metagenome; Sea water
39676
39750
+
Ile2
CAT
[ENA]
¡û
>WENV182583419
OJHD01011059
[OJHD] seawater metagenome; Sea water
143
69
-
Ile2
CAT
[ENA]
¡û
>WENV182587562
OJHN01000056
[OJHN] seawater metagenome; Sea water
17456
17530
+
Ile2
CAT
[ENA]
¡û
>WENV182592310
OJIR01000001
[OJIR] seawater metagenome; Sea water
662
587
-
Ile2
CAT
[ENA]
¡û
>WENV183054497
OLGU01000002
[OLGU] seawater metagenome; Sea water
40133
40059
-
Ile2
CAT
[ENA]
¡û
>WENV183059210
OLHU01000012
[OLHU] seawater metagenome; Sea water
5637
5711
+
Ile2
CAT
[ENA]
¡û
>WENV183060191
OLHX01000051
[OLHX] seawater metagenome; Sea water
4969
5043
+
Ile2
CAT
[ENA]
¡û
>WENV183746419
POYD01005791
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
596
520
-
Ile2
CAT
[ENA]
¡û
>WENV170568889
FLMP01093278
[FLMP] seawater metagenome; seawater
642
568
-
Met
CAT
[ENA]
¡û
>WENV170570758
FLOH01000020
[FLOH] marine metagenome; water
108396
108322
-
Met
CAT
[ENA]
¡û
>WENV170571827
FLOH01000328
[FLOH] marine metagenome; water
10711
10635
-
Met
CAT
[ENA]
¡û
>WENV170623618
FUWD013160860
[FUWD] metagenome; unknown
108
184
+
Met
CAT
[ENA]
¡û
>WENV170624167
FUWD013176518
[FUWD] metagenome; unknown
977
901
-
Met
CAT
[ENA]
¡û
>WENV170627283
FUWD013232478
[FUWD] metagenome; unknown
71128
71204
+
Met
CAT
[ENA]
¡û
>WENV170631895
FUWD013370341
[FUWD] metagenome; unknown
108
184
+
Met
CAT
[ENA]
¡û
>WENV170632447
FUWD013382462
[FUWD] metagenome; unknown
977
901
-
Met
CAT
[ENA]
¡û
>WENV170952460
MEHZ011598777
[MEHZ] marine metagenome; marine surface water
4459
4533
+
Met
CAT
[ENA]
¡û
>WENV170974738
MTKY01072748
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
609
683
+
Met
CAT
[ENA]
¡û
>C181002034
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
455072
455146
+
Met
CAT
-
¡û
>C181194476
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
945000
944926
-
Met
CAT
-
¡û
>C181196590
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
2328043
2328117
+
Met
CAT
-
¡û
>C191092519
CP032630
Actinomycetota
Protaetiibacter intestinalis 2DFWR-13 [CP032630]
2598178
2598253
+
Met
CAT
-
¡û
>W1810090119
PGFF01000001
Actinomycetota
Diaminobutyricimonas aerilata DSM 27393 [PGFF]
1686346
1686422
+
Met
CAT
[ENA]
¡û
>W1810277268
PSTS01000002
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
128789
128715
-
Met
CAT
[ENA]
¡û
>W1810282084
PSXY01000011
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
78549
78475
-
Met
CAT
[ENA]
¡û
>SRA1023571
SRR035084.127162
454 Sequencing (SRP001805)
305
381
+
Met
CAT
[SRA]
>SRA1024808
SRR035084.408518
454 Sequencing (SRP001805)
453
377
-
Met
CAT
[SRA]
>SRA1027416
SRR035086.121205
454 Sequencing (SRP001807)
23
99
+
Met
CAT
[SRA]
>W2010099857
BJUU01000029
Actinomycetota
Agrococcus baldri NBRC 103055 [BJUU]
32725
32651
-
Ile2
CAT
[ENA]
¡û
>W2010472532
JAAHFL010000001
Actinomycetota
Salinibacterium sp. ZJ70 [JAAHFL]
331465
331389
-
Ile2
CAT
[ENA]
¡û
>W2010609805
JABMLJ010000001
Actinomycetota
Herbiconiux sp. VKM Ac-2851 [JABMLJ]
801242
801167
-
Ile2
CAT
[ENA]
¡û
>SRA1037216
SRR035090.94259
454 Sequencing (SRP001811)
205
281
+
Met
CAT
[SRA]
>W2010671075
JACCBM010000001
Actinomycetota
Herbiconiux flava DSM 26474 [JACCBM]
2879743
2879669
-
Ile2
CAT
[ENA]
¡û
>W2010674677
JACCFM010000001
Actinomycetota
Leifsonia psychrotolerans LI1 [JACCFM]
761401
761475
+
Ile2
CAT
[ENA]
¡û
>W2010691885
JACGWX010000001
Actinomycetota
Yonghaparkia alkaliphila DSM 19663 [JACGWX]
554761
554835
+
Ile2
CAT
[ENA]
¡û
>W2010709742
JACHMJ010000001
Actinomycetota
Conyzicola lurida DSM 105784 [JACHMJ]
1765019
1764945
-
Ile2
CAT
[ENA]
¡û
>SRA1038055
SRR035090.239740
454 Sequencing (SRP001811)
206
282
+
Met
CAT
[SRA]
>W2011541225
SCPB01000042
Actinomycetota
Microbacteriaceae bacterium X2B [SCPB]
7178
7253
+
Ile2
CAT
[ENA]
¡û
>W2011578474
SGXI01000004
Actinomycetota
Leifsonia sp. BK543 [SGXI]
232593
232519
-
Ile2
CAT
[ENA]
¡û
>W2011604800
SJEV01000002
Actinomycetota
Microbacteriaceae bacterium J5903 [SJEV]
63915
63989
+
Ile2
CAT
[ENA]
¡û
>W2012000100
VEFR01000001
Actinomycetota
Agrococcus jejuensis DE0131 [VEFR]
214017
214091
+
Ile2
CAT
[ENA]
¡û
>W2012034554
VHQH01000039
Actinomycetota
Schumannella sp. 10F1B-5-1 [VHQH]
254750
254825
+
Ile2
CAT
[ENA]
¡û
>SRA1051150
SRR035096.95294
454 Sequencing (SRP001817)
100
176
+
Met
CAT
[SRA]
>SRA1052518
SRR035098.219588
454 Sequencing (SRP001819)
230
154
-
Met
CAT
[SRA]
>SRA1052794
SRR035098.277162
454 Sequencing (SRP001819)
230
154
-
Met
CAT
[SRA]
>W2110023519
BMGB01000001
Actinomycetota
Conyzicola nivalis CGMCC 1.12813 [BMGB]
1056347
1056273
-
Ile2
CAT
[ENA]
¡û
>W2110024787
BMHD01000001
Actinomycetota
Cnuibacter physcomitrellae CGMCC 1.15041 [BMHD]
639649
639575
-
Ile2
CAT
[ENA]
¡û
>W2110161122
JAAVUZ010000004
Actinomycetota
Glaciihabitans sp. dw_435 [JAAVUZ]
323503
323577
+
Ile2
CAT
[ENA]
¡û
>W2110185926
JABUKC010000002
Actinomycetota
Yonghaparkia alkaliphila GA224 [JABUKC]
311476
311551
+
Ile2
CAT
[ENA]
¡û
>W2110329699
JADKSG010000002
Actinomycetota
Herbiconiux sp. VKM Ac-1786 [JADKSG]
751267
751192
-
Ile2
CAT
[ENA]
¡û
>W2110503674
JAFIQW010000004
Actinomycetota
Herbiconiux sp. SYSU D00978 [JAFIQW]
192350
192424
+
Ile2
CAT
[ENA]
¡û
>W2110516264
JAFMTA010000001
Actinomycetota
Naasia sp. SYSU D00948 [JAFMTA]
2369794
2369868
+
Ile2
CAT
[ENA]
¡û
>C211126833
CP059987
Actinomycetota
Protaetiibacter sp. SSC-01 [CP059987]
1712705
1712631
-
Ile2
CAT
-
¡û
>C211153086
CP061770
Actinomycetota
Salinibacterium sp. ZJ70 [CP061770]
1632824
1632748
-
Ile2
CAT
-
¡û
>C231545491
CP113089
Actinomycetota
Microcella sp. MMS21-STM12 [CP113089]
2301116
2301191
+
Ile2
CAT
-
¡û
>C231545535
CP113090
Actinomycetota
Microcella sp. MMS21-STM26 [CP113090]
1926414
1926489
+
Ile2
CAT
-
¡û
>C241080663
CP043504
Actinomycetota
Protaetiibacter larvae KACC 19322 [CP043504]
2023331
2023255
-
Ile2
CAT
-
¡û
>C241149883
CP051299
Actinomycetota
Microcella flavibacter WY83 [CP051299]
1272802
1272876
+
Ile2
CAT
-
¡û
>W2310022389
BSEW01000002
Actinomycetota
Herbiconiux flava VKM Ac-2058 [BSEW]
884232
884306
+
Ile2
CAT
[ENA]
¡û
>C161073141
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
2935828
2935754
-
Met
CAT
[Ensembl]
¡û
>W1610625683
LIAY01000115
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
3615
3539
-
Met
CAT
[ENA]
¡û
>W1610722847
LMCX01000002
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
594680
594756
+
Met
CAT
[ENA]
¡û
>W1610743471
LMSV01000002
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
587617
587693
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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