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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.206225 (45 seq.)
>C171036916
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
1400884
1400808
-
Ile
GAT
-
¡û
>WENV180102695
OAOZ01006028
[OAOZ] marine metagenome; ENVO:00002010
403
329
-
Ile
GAT
[ENA]
¡û
>WENV180103267
OAPA01011484
[OAPA] marine metagenome; ENVO:00002010
246
320
+
Ile
GAT
[ENA]
¡û
>WENV180114572
OAPS01020429
[OAPS] marine metagenome; sea water
611
537
-
Ile
GAT
[ENA]
¡û
>WENV180208935
OBAK01000237
[OBAK] marine metagenome; ENVO.00002150
2268
2342
+
Ile
GAT
[ENA]
¡û
>WENV180209581
OBAL01005451
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1441
1367
-
Ile
GAT
[ENA]
¡û
>WENV180359516
OBNS01001012
[OBNS] marine metagenome; Seawater
455
381
-
Ile
GAT
[ENA]
¡û
>WENV180367492
OBOE01112895
[OBOE] marine metagenome; ENVO:00002010
336
409
+
Ile
GAT
[ENA]
¡û
>WENV180368073
OBOF01022150
[OBOF] marine metagenome; ENVO:00002010
225
299
+
Ile
GAT
[ENA]
¡û
>WENV180370293
OBOH01064158
[OBOH] marine metagenome; ENVO:00002010
8
84
+
Ile
GAT
[ENA]
¡û
>WENV180376567
OBOM01028954
[OBOM] marine metagenome; Seawater
319
393
+
Ile
GAT
[ENA]
¡û
>WENV180382018
OBOS01075389
[OBOS] marine metagenome; ENVO 00002150
454
380
-
Ile
GAT
[ENA]
¡û
>WENV180391148
OBPM01019871
[OBPM] marine metagenome; ENVO:00002010
152
226
+
Ile
GAT
[ENA]
¡û
>WENV180391881
OBPN01084693
[OBPN] marine metagenome; seawater
198
272
+
Ile
GAT
[ENA]
¡û
>WENV180392758
OBPP01007951
[OBPP] marine metagenome; ENVO:00002042
210
284
+
Ile
GAT
[ENA]
¡û
>WENV180393707
OBPR01002008
[OBPR] marine metagenome; ENVO:00002042
444
370
-
Ile
GAT
[ENA]
¡û
>WENV180395852
OBPT01194295
[OBPT] marine metagenome; ENVO:00002010 seawater
305
231
-
Ile
GAT
[ENA]
¡û
>WENV180399132
OBQG01000921
[OBQG] marine metagenome; ENV:00002010
627
553
-
Ile
GAT
[ENA]
¡û
>WENV180399263
OBQH01000029
[OBQH] marine metagenome; ENV:00002010
2640
2714
+
Ile
GAT
[ENA]
¡û
>WENV180399483
OBQO01000003
[OBQO] marine metagenome; ENVO:00002010
60436
60510
+
Ile
GAT
[ENA]
¡û
>WENV180590815
OCOU01014236
[OCOU] marine metagenome; Water
76
2
-
Ile
GAT
[ENA]
¡û
>WENV180591371
OCOV01015066
[OCOV] marine metagenome; ENVO:01000301
649
575
-
Ile
GAT
[ENA]
¡û
>WENV180650309
OCSY01005566
[OCSY] marine metagenome; 30 L Plastic container
260
186
-
Ile
GAT
[ENA]
¡û
>WENV181320933
OFKJ01000481
[OFKJ] marine metagenome; sea ice
479
405
-
Ile
GAT
[ENA]
¡û
>WENV181322032
OFKP01000819
[OFKP] marine metagenome; sea ice
1379
1453
+
Ile
GAT
[ENA]
¡û
>WENV181324136
OFLC01000388
[OFLC] marine metagenome; melt pond
1190
1116
-
Ile
GAT
[ENA]
¡û
>WENV181324419
OFLE01007309
[OFLE] marine metagenome; sea ice
90
164
+
Ile
GAT
[ENA]
¡û
>WENV181324491
OFLF01000012
[OFLF] marine metagenome; melt pond
9476
9550
+
Ile
GAT
[ENA]
¡û
>WENV181325860
OFLJ01036186
[OFLJ] seawater metagenome; seawater
253
327
+
Ile
GAT
[ENA]
¡û
>WENV181369591
OFQP01010057
[OFQP] freshwater metagenome; Freshwater Lake
460
536
+
Ile
GAT
[ENA]
¡û
>WENV181843415
OGVU01013783
[OGVU] freshwater metagenome; freshwater
628
702
+
Ile
GAT
[ENA]
¡û
>WENV183619714
OOFQ01037156
[OOFQ] marine metagenome; seawater
253
327
+
Ile
GAT
[ENA]
¡û
>WENV183625484
OOGF01041388
[OOGF] marine metagenome; seawater
425
499
+
Ile
GAT
[ENA]
¡û
>WENV183625625
OOGG01004361
[OOGG] marine metagenome; sea ice
982
908
-
Ile
GAT
[ENA]
¡û
>ENV08001181
ABMR01024922
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
96
22
-
Ile
GAT
[ENA]
¡û
>WENV170567522
FLMP01001513
[FLMP] seawater metagenome; seawater
387
313
-
Ile
GAT
[ENA]
¡û
>WENV170645651
JNSL01000179
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14
90
+
Ile
GAT
[ENA]
¡û
>WENV170949882
MEHZ011461820
[MEHZ] marine metagenome; marine surface water
3501
3427
-
Ile
GAT
[ENA]
¡û
>C191178353
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
10075
10151
+
Ile
GAT
-
¡û
>C191178392
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
10097
10173
+
Ile
GAT
-
¡û
>SRA1001239
SRR001057.3917
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
96
22
-
Ile
GAT
[SRA]
>C151025265
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
11406
11482
+
Ile
GAT
[Ensembl]
¡û
>SRA1053591
SRR035098.445953
454 Sequencing (SRP001819)
128
202
+
Ile
GAT
[SRA]
>C201276007
CP054056
Actinomycetota
Aquiluna sp. 15G-AUS-rot [CP054056]
9600
9674
+
Ile
GAT
-
¡û
>W121063454
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
86016
86090
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK