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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.206707 (49 seq.)
>W1710943683
LOPY01000017
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
259
183
-
Ile
GAT
[ENA]
¡û
>W1711054988
LRUF01000022
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
1623
1699
+
Ile
GAT
[ENA]
¡û
>W1711175940
LWFC01000230
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
735
659
-
Ile
GAT
[ENA]
¡û
>W1711175947
LWFC01000264
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
334
258
-
Ile
GAT
[ENA]
¡û
>W1711175984
LWFC01001643
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
144
68
-
Ile
GAT
[ENA]
¡û
>WENV180231522
OBCN01045332
[OBCN] human gut metagenome; human gut
253
177
-
Ile
GAT
[ENA]
¡û
>WENV180404766
OBSA01046323
[OBSA] human gut metagenome; ENVO:feces
253
177
-
Ile
GAT
[ENA]
¡û
>WENV180561881
OCKZ01028236
[OCKZ] human gut metagenome; human gut
253
177
-
Ile
GAT
[ENA]
¡û
>WENV180564787
OCLF01002388
[OCLF] human gut metagenome; human gut
2399
2323
-
Ile
GAT
[ENA]
¡û
>W1910194375
CZDG02000082
Gammaproteobacteria
Francisella tularensis subsp. holarctica 11-935-13S [CZDG]
3297
3221
-
Ile
GAT
[ENA]
¡û
>W1910194409
CZDH02000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica 11-930-9S [CZDH]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810182927
PJZY01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.45 [PJZY]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810182993
PKAA01000080
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.91 [PKAA]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810183158
PKAF01000080
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.90 [PKAF]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810183290
PKAJ01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.53 [PKAJ]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810183488
PKAP01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.87 [PKAP]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810183521
PKAQ01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.49 [PKAQ]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810183752
PKAX01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.45 [PKAX]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810183785
PKAY01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.62 [PKAY]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810183818
PKAZ01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.62 [PKAZ]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810184016
PKBF01000082
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.33 [PKBF]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810184115
PKBI01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.61 [PKBI]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810184280
PKBN01000080
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.89 [PKBN]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810184313
PKBO01000080
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.53 [PKBO]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W1810584081
QEYF01000081
Gammaproteobacteria
Francisella tularensis subsp. holarctica 14T0103 [QEYF]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W2010592998
JABEPJ010000054
Gammaproteobacteria
Pseudoalteromonas sp. NEC-BIFX-2020_002 [JABEPJ]
417
341
-
Ile
GAT
[ENA]
¡û
>W2010639872
JABVXG010000147
Gammaproteobacteria
Pseudoalteromonas sp. 2103 [JABVXG]
106
182
+
Ile
GAT
[ENA]
¡û
>W2010735633
JACJEG010000184
Gammaproteobacteria
Pseudoalteromonas sp. SR41-6 [JACJEG]
154
230
+
Ile
GAT
[ENA]
¡û
>W2010737106
JACJEW010000240
Gammaproteobacteria
Pseudoalteromonas sp. SG44-1 [JACJEW]
339
263
-
Ile
GAT
[ENA]
¡û
>W2010737307
JACJEY010000172
Gammaproteobacteria
Pseudoalteromonas sp. SG43-7 [JACJEY]
154
230
+
Ile
GAT
[ENA]
¡û
>W2010737407
JACJEZ010000179
Gammaproteobacteria
Pseudoalteromonas sp. SG43-6 [JACJEZ]
237
161
-
Ile
GAT
[ENA]
¡û
>W2010738579
JACJFL010000115
Gammaproteobacteria
Pseudoalteromonas sp. SG41-1 [JACJFL]
490
414
-
Ile
GAT
[ENA]
¡û
>W2110651662
JAHVHV010000011
Gammaproteobacteria
Ferrimonas balearica DP5N7-5 [JAHVHV]
308
384
+
Ile
GAT
[ENA]
¡û
>W2110652624
JAHVIK010000019
Gammaproteobacteria
Halomonas denitrificans DP7Y7-3 [JAHVIK]
278
354
+
Ile
GAT
[ENA]
¡û
>W2110652626
JAHVIK010000020
Gammaproteobacteria
Halomonas denitrificans DP7Y7-3 [JAHVIK]
160
236
+
Ile
GAT
[ENA]
¡û
>W2110654837
JAHVJZ010000016
Gammaproteobacteria
Marinobacter nauticus DP3N21-5 [JAHVJZ]
301
377
+
Ile
GAT
[ENA]
¡û
>W2110654839
JAHVJZ010000017
Gammaproteobacteria
Marinobacter nauticus DP3N21-5 [JAHVJZ]
300
224
-
Ile
GAT
[ENA]
¡û
>W2110655558
JAHVKN010000022
Gammaproteobacteria
Ferrimonas balearica DP4N21-5 [JAHVKN]
726
650
-
Ile
GAT
[ENA]
¡û
>W2110655571
JAHVKN010000029
Gammaproteobacteria
Ferrimonas balearica DP4N21-5 [JAHVKN]
369
293
-
Ile
GAT
[ENA]
¡û
>W2110658605
JAHWRT010000016
Gammaproteobacteria
Ferrimonas balearica DP2N21-1 [JAHWRT]
453
377
-
Ile
GAT
[ENA]
¡û
>W2110658607
JAHWRT010000018
Gammaproteobacteria
Ferrimonas balearica DP2N21-1 [JAHWRT]
369
293
-
Ile
GAT
[ENA]
¡û
>C211179130
CP063663
Gammaproteobacteria
Pseudoalteromonas arabiensis LST-1 [CP063663]
3443491
3443567
+
Ile
GAT
-
¡û
>C211202532
CP065231
Gammaproteobacteria
Pseudoalteromonas sp. A41-2 [CP065231]
37667
37743
+
Ile
GAT
-
¡û
>C211202537
CP065231
Gammaproteobacteria
Pseudoalteromonas sp. A41-2 [CP065231]
336458
336534
+
Ile
GAT
-
¡û
>C211360668
CP077770
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis SDCH90 [CP077770]
38957
39033
+
Ile
GAT
-
¡û
>C211360677
CP077770
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis SDCH90 [CP077770]
358588
358664
+
Ile
GAT
-
¡û
>W2130038507
JAHVHV010000012
Gammaproteobacteria
Ferrimonas balearica DP5N7-5 [JAHVHV]
494
418
-
Ile
GAT
[ENA]
¡û
>ENV002919
AY934371
Environmental sample from ENV division of INSDC
117
195
+
Ile
GAT
[ENA]
>W1710748770
LHPH01000072
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
533
457
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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