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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208158 (127 seq.)
>W1710797291
LJSX01000043
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
234
310
+
Trp
CCA
[ENA]
¡û
>W1710873121
LMMN01000058
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
6076
6152
+
Trp
CCA
[ENA]
¡û
>W1710874329
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
448127
448051
-
Trp
CCA
[ENA]
¡û
>W1710874422
LMNP01000005
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
356629
356553
-
Trp
CCA
[ENA]
¡û
>W1710878277
LMQV01000001
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
132358
132282
-
Trp
CCA
[ENA]
¡û
>W1711009531
LQQT01000018
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
187
263
+
Trp
CCA
[ENA]
¡û
>W1711179455
LWHQ01000087
Alphaproteobacteria
Methylobacterium platani [LWHQ]
20328
20252
-
Trp
CCA
[ENA]
¡û
>W131051721
AMXU01000022
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
7093
7017
-
Trp
CCA
[ENA]
¡û
>W131163795
ARAA01000070
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
422828
422904
+
Trp
CCA
[ENA]
¡û
>W131222251
AUBC01000016
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
165294
165218
-
Trp
CCA
[ENA]
¡û
>w015382
AAPC01000001
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
381878
381956
+
Trp
CCA
[ENA]
¡û
>w001812
AAAP01001430
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
707
785
+
Trp
CCA
[ENA]
¡û
>WENV181233996
OFET01000670
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
16234
16158
-
Trp
CCA
[ENA]
¡û
>WENV181234366
OFEU01000069
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1330
1406
+
Trp
CCA
[ENA]
¡û
>WENV181295759
OFHJ01000475
[OFHJ] soil metagenome; Clay
15094
15018
-
Trp
CCA
[ENA]
¡û
>WENV181307944
OFIS01000052
[OFIS] sludge metagenome; sludge
152758
152682
-
Trp
CCA
[ENA]
¡û
>WENV181311643
OFJB01006608
[OFJB] sludge metagenome; sludge
3297
3221
-
Trp
CCA
[ENA]
¡û
>WENV181402124
OFTY01000139
[OFTY] sludge metagenome; sludge
1714
1790
+
Trp
CCA
[ENA]
¡û
>W141151398
AXBA01000040
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
42180
42104
-
Trp
CCA
[ENA]
¡û
>C08011445
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
3739072
3739148
+
Trp
CCA
[Ensembl]
¡û
>C08006499
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4436594
4436670
+
Trp
CCA
[Ensembl]
¡û
>C08006474
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
445130
445057
-
Trp
CCA
[Ensembl]
¡û
>W141278501
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
3617869
3617793
-
Trp
CCA
[ENA]
¡û
>C08006646
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
4769031
4769107
+
Trp
CCA
[Ensembl]
¡û
>WENV170683269
LFIK01007978
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
3947
4023
+
Trp
CCA
[ENA]
¡û
>W09106866
ABEC01000007
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
341416
341492
+
Trp
CCA
[ENA]
¡û
>W09107195
ABFR01000009
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
225403
225479
+
Trp
CCA
[ENA]
¡û
>C181227876
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
1380335
1380259
-
Trp
CCA
-
¡û
>W141821092
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1874213
1874137
-
Trp
CCA
[ENA]
¡û
>C09107429
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
4606949
4607025
+
Trp
CCA
[Ensembl]
¡û
>C09107515
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
4886604
4886680
+
Trp
CCA
[Ensembl]
¡û
>C09107616
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
4471396
4471472
+
Trp
CCA
[Ensembl]
¡û
>W1911708576
QOWC01000157
Alphaproteobacteria
Methylobacterium sp. MIMD6 [QOWC]
160
236
+
Trp
CCA
[ENA]
¡û
>SRA1014826
SRR023845.331886
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
-1
-
Trp
CCA
[SRA]
>C151094775
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
114708
114632
-
Trp
CCA
-
¡û
>W2010100632
BJVP01000003
Alphaproteobacteria
Methylorubrum extorquens NBRC 15911 [BJVP]
350522
350446
-
Trp
CCA
[ENA]
¡û
>W2010493439
JAAKGV010000048
Alphaproteobacteria
Methylobacterium sp. DB0501 [JAAKGV]
18674
18598
-
Trp
CCA
[ENA]
¡û
>W2010535238
JAAPAY010000046
Alphaproteobacteria
Methylobacterium sp. ISTM1 [JAAPAY]
5971
6047
+
Trp
CCA
[ENA]
¡û
>W2010593010
JABEPP010000002
Alphaproteobacteria
Enterovirga sp. DB1703 [JABEPP]
811065
810989
-
Trp
CCA
[ENA]
¡û
>W2010698428
JACHEH010000001
Alphaproteobacteria
Chelatococcus composti DSM 101465 [JACHEH]
177190
177266
+
Trp
CCA
[ENA]
¡û
>W2010712740
JACHOP010000007
Alphaproteobacteria
Methylorubrum rhodinum DSM 2163 [JACHOP]
79738
79662
-
Trp
CCA
[ENA]
¡û
>W2010725897
JACIEN010000003
Alphaproteobacteria
Chelatococcus caeni DSM 103737 [JACIEN]
121754
121678
-
Trp
CCA
[ENA]
¡û
>W2010731181
JACIIW010000001
Alphaproteobacteria
Xanthobacter tagetidis DSM 11105 [JACIIW]
258015
258091
+
Trp
CCA
[ENA]
¡û
>W2010740301
JACJIB010000004
Alphaproteobacteria
Methylorubrum thiocyanatum DSM 11490 [JACJIB]
450873
450797
-
Trp
CCA
[ENA]
¡û
>W2011021398
NPEW01000113
Alphaproteobacteria
Rhodoplanes piscinae DSM 19946 [NPEW]
8023
7947
-
Trp
CCA
[ENA]
¡û
>W2011281789
QOWC01000157
Alphaproteobacteria
Methylobacterium sp. MIMD6 [QOWC]
160
236
+
Trp
CCA
[ENA]
¡û
>W2011398142
RCIG01000008
Alphaproteobacteria
Methylobacterium sp. DB1607 [RCIG]
52058
51982
-
Trp
CCA
[ENA]
¡û
>W2011402564
RCTF01000010
Alphaproteobacteria
Xanthobacter tagetidis ATCC 700314 [RCTF]
1463
1539
+
Trp
CCA
[ENA]
¡û
>W2011495231
RWKV01000015
Alphaproteobacteria
Aquabacter sp. Sn-9-2 [RWKV]
22675
22599
-
Trp
CCA
[ENA]
¡û
>W2011506161
RYFI01000034
Alphaproteobacteria
Hansschlegelia zhihuaiae S 113 [RYFI]
19148
19072
-
Trp
CCA
[ENA]
¡û
>W2011522244
SACP01000028
Alphaproteobacteria
Methylobacterium sp. TER-1 [SACP]
59616
59540
-
Trp
CCA
[ENA]
¡û
>W2011540780
SCOS01000026
Alphaproteobacteria
Methylobacterium sp. L1A1 [SCOS]
9547
9623
+
Trp
CCA
[ENA]
¡û
>W2011627351
SMAI01000025
Alphaproteobacteria
Aquabacter spiritensis DSM 9035 [SMAI]
12985
12909
-
Trp
CCA
[ENA]
¡û
>W2011655006
SOBM01000006
Alphaproteobacteria
Azorhizobium sp. AG788 [SOBM]
499178
499102
-
Trp
CCA
[ENA]
¡û
>W2011676664
SRHQ01000003
Alphaproteobacteria
Methylorubrum sp. Q1 [SRHQ]
350231
350155
-
Trp
CCA
[ENA]
¡û
>W2011678524
SRLB01000035
Alphaproteobacteria
Methylobacterium sp. 6HR-1 [SRLB]
68674
68598
-
Trp
CCA
[ENA]
¡û
>W2011963383
VAUP01000037
Alphaproteobacteria
Xanthobacter autotrophicus DSM 432 [VAUP]
345277
345201
-
Trp
CCA
[ENA]
¡û
>W2011980781
VDDA01000004
Alphaproteobacteria
Methylobacterium sp. 17Sr1-39 [VDDA]
426154
426078
-
Trp
CCA
[ENA]
¡û
>W2012088651
VMBP01000008
Alphaproteobacteria
Starkeya sp. 3C [VMBP]
250
326
+
Trp
CCA
[ENA]
¡û
>W2012143474
VTRS01000005
Alphaproteobacteria
Rhizobiales bacterium SYSU G02060 [VTRS]
95542
95618
+
Trp
CCA
[ENA]
¡û
>W2012144489
VTTL01000018
Alphaproteobacteria
Xanthobacter sp. 29k [VTTL]
664
740
+
Trp
CCA
[ENA]
¡û
>W2012311091
WEKV01000018
Alphaproteobacteria
Methylorubrum populi Pinkel [WEKV]
225151
225227
+
Trp
CCA
[ENA]
¡û
>W2012398983
WNKV01000003
Alphaproteobacteria
Rhodoplanes serenus DSM 18633 [WNKV]
125309
125385
+
Trp
CCA
[ENA]
¡û
>W2110019351
BMCT01000014
Alphaproteobacteria
Azorhizobium oxalatiphilum CCM 7897 [BMCT]
616
692
+
Trp
CCA
[ENA]
¡û
>W2110025830
BMHX01000001
Alphaproteobacteria
Chelatococcus composti CGMCC 1.15283 [BMHX]
492532
492456
-
Trp
CCA
[ENA]
¡û
>W2110278873
JACWCU010000014
Alphaproteobacteria
Methylobacterium ajmalii IIF1SW-B5 [JACWCU]
1397
1473
+
Trp
CCA
[ENA]
¡û
>W2110481300
JAFDUY010000004
Alphaproteobacteria
Chelatococcus daeguensis M38T9 [JAFDUY]
17552
17476
-
Trp
CCA
[ENA]
¡û
>W2110540684
JAGGML010000001
Alphaproteobacteria
Xanthobacter flavus WS4821 [JAGGML]
4275719
4275795
+
Trp
CCA
[ENA]
¡û
>W2110590333
JAHBGC010000031
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [JAHBGC]
264
340
+
Trp
CCA
[ENA]
¡û
>W2110590391
JAHBGD010000029
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [JAHBGD]
812
888
+
Trp
CCA
[ENA]
¡û
>W2110590430
JAHBGE010000072
Alphaproteobacteria
Ancylobacter lacus VKM B-3280 [JAHBGE]
165193
165269
+
Trp
CCA
[ENA]
¡û
>W2110591689
JAHBRZ010000001
Alphaproteobacteria
Chelatococcus composti DSM 101465 [JAHBRZ]
379067
378991
-
Trp
CCA
[ENA]
¡û
>W2110593060
JAHCQH010000009
Alphaproteobacteria
Ancylobacter sp. VKM B-3255 [JAHCQH]
541
617
+
Trp
CCA
[ENA]
¡û
>C201079728
CP039546
Alphaproteobacteria
Methylorubrum populi YC-XJ1 [CP039546]
4342221
4342297
+
Trp
CCA
-
¡û
>C201154065
CP045144
Alphaproteobacteria
Ancylobacter sp. TS-1 [CP045144]
581930
582006
+
Trp
CCA
-
¡û
>C201203452
CP047607
Alphaproteobacteria
Methylobacterium sp. NI91 [CP047607]
4270796
4270872
+
Trp
CCA
-
¡û
>C211014962
AP024145
Alphaproteobacteria
Methylobacterium indicum VL1 [AP024145]
3666081
3666005
-
Trp
CCA
-
¡û
>C211060186
CP043627
Alphaproteobacteria
Methylobacterium aquaticum BG2 [CP043627]
2031053
2031129
+
Trp
CCA
-
¡û
>C211176128
CP063362
Alphaproteobacteria
Xanthobacter sp. YN2 [CP063362]
3483088
3483164
+
Trp
CCA
-
¡û
>C211388857
CP081869
Alphaproteobacteria
Chenggangzhangella methanolivorans CHL1 [CP081869]
283183
283107
-
Trp
CCA
-
¡û
>C231024554
AP025942
Alphaproteobacteria
Methylorubrum sp. GM97 [AP025942]
4301938
4302014
+
Trp
CCA
-
¡û
>C231179897
CP083239
Alphaproteobacteria
Ancylobacter polymorphus ZM13 [CP083239]
3688212
3688136
-
Trp
CCA
-
¡û
>C231324731
CP092848
Alphaproteobacteria
Methylobacterium organophilum WPA_B [CP092848]
4949716
4949792
+
Trp
CCA
-
¡û
>W2110752828
NKUI01000104
Alphaproteobacteria
Methylorubrum zatmanii LMG 6087 [NKUI]
3484
3408
-
Trp
CCA
[ENA]
¡û
>C231527964
CP110130
Alphaproteobacteria
Methylorubrum extorquens NBC_00404 [CP110130]
3934691
3934767
+
Trp
CCA
-
¡û
>C241132009
CP048834
Alphaproteobacteria
Starkeya sp. ORNL1 [CP048834]
980657
980581
-
Trp
CCA
-
¡û
>C241180463
CP073633
Alphaproteobacteria
Methylorubrum extorquens ATCC 55366 [CP073633]
4792755
4792831
+
Trp
CCA
-
¡û
>W2310012942
BPQH01000018
Alphaproteobacteria
Methylobacterium crusticola KCTC 52305 [BPQH]
102051
101975
-
Trp
CCA
[ENA]
¡û
>W2310013006
BPQJ01000005
Alphaproteobacteria
Methylobacterium frigidaeris JCM 32048 [BPQJ]
284889
284965
+
Trp
CCA
[ENA]
¡û
>W2310013369
BPQQ01000102
Alphaproteobacteria
Methylobacterium isbiliense DSM 17168 [BPQQ]
23155
23079
-
Trp
CCA
[ENA]
¡û
>W2310013603
BPQV01000019
Alphaproteobacteria
Methylobacterium organophilum NBRC 15689 [BPQV]
37011
36935
-
Trp
CCA
[ENA]
¡û
>W2310013878
BPRC01000005
Alphaproteobacteria
Methylorubrum aminovorans NBRC 15686 [BPRC]
146155
146079
-
Trp
CCA
[ENA]
¡û
>W2310013993
BPRE01000024
Alphaproteobacteria
Methylorubrum suomiense DSM 14458 [BPRE]
50069
49993
-
Trp
CCA
[ENA]
¡û
>W2310014022
BPRF01000015
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BPRF]
83408
83484
+
Trp
CCA
[ENA]
¡û
>W2310021143
BSDO01000004
Alphaproteobacteria
Xanthobacter flavus 301 [BSDO]
1437
1513
+
Trp
CCA
[ENA]
¡û
>W2310022870
BSFK01000006
Alphaproteobacteria
Methylopila jiangsuensis VKM B-2555 [BSFK]
602
678
+
Trp
CCA
[ENA]
¡û
>W2310022942
BSFL01000010
Alphaproteobacteria
Methylopila turkensis VKM B-2748 [BSFL]
206
282
+
Trp
CCA
[ENA]
¡û
>W2310022981
BSFM01000018
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [BSFM]
812
888
+
Trp
CCA
[ENA]
¡û
>W1511400910
JTHF01000232
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
42539
42463
-
Trp
CCA
[ENA]
¡û
>W1511400959
JTHG01000149
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
4761
4685
-
Trp
CCA
[ENA]
¡û
>W1511563221
LABX01000003
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
2133
2209
+
Trp
CCA
[ENA]
¡û
>W1511563353
LABZ01000061
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
18179
18103
-
Trp
CCA
[ENA]
¡û
>C161004975
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
4285355
4285431
+
Trp
CCA
[Ensembl]
¡û
>W1610042971
BAZM01000570
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
296
220
-
Trp
CCA
[ENA]
¡û
>W1610043197
BAZP01002513
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
202
278
+
Trp
CCA
[ENA]
¡û
>W121010661
AGJK01000015
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
1311
1387
+
Trp
CCA
[ENA]
¡û
>W121110770
ALIQ01000001
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
19563
19487
-
Trp
CCA
[ENA]
¡û
>W1610516194
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
165043
164967
-
Trp
CCA
[ENA]
¡û
>W1610590406
LDRL01000006
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
2369
2445
+
Trp
CCA
[ENA]
¡û
>W1610590491
LDRM01000053
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
34326
34250
-
Trp
CCA
[ENA]
¡û
>W1610590565
LDRN01000074
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
46005
45929
-
Trp
CCA
[ENA]
¡û
>W1610631782
LIOL01000020
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
17589
17513
-
Trp
CCA
[ENA]
¡û
>W1610661248
LJSX01000043
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
234
310
+
Trp
CCA
[ENA]
¡û
>W1610735467
LMMN01000058
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
6076
6152
+
Trp
CCA
[ENA]
¡û
>W1610735574
LMMQ01000009
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
370316
370392
+
Trp
CCA
[ENA]
¡û
>W1610736675
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
448127
448051
-
Trp
CCA
[ENA]
¡û
>W1610736768
LMNP01000005
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
356629
356553
-
Trp
CCA
[ENA]
¡û
>W1610736827
LMNQ01000012
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
6867
6943
+
Trp
CCA
[ENA]
¡û
>W1610740623
LMQV01000001
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
132358
132282
-
Trp
CCA
[ENA]
¡û
>W1610858051
LQQT01000018
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
187
263
+
Trp
CCA
[ENA]
¡û
>W1610987356
LWHQ01000087
Alphaproteobacteria
Methylobacterium platani [LWHQ]
20328
20252
-
Trp
CCA
[ENA]
¡û
>W1710040131
BAZM01000570
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
296
220
-
Trp
CCA
[ENA]
¡û
>W1710040357
BAZP01002513
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
202
278
+
Trp
CCA
[ENA]
¡û
>W1710501485
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
165043
164967
-
Trp
CCA
[ENA]
¡û
>W1710548841
FOEB01000018
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
1338
1414
+
Trp
CCA
[ENA]
¡û
>W1710709771
LDRM01000053
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
34326
34250
-
Trp
CCA
[ENA]
¡û
>W1710764667
LIOL01000020
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
17589
17513
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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