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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209445 (18 seq.)
>W131104569
APCS01000023
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
12521
12445
-
Met
CAT
[ENA]
¡û
>C007978
AE001825
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
60481
60557
+
Met
CAT
[Ensembl]
¡û
>WENV180231989
OBCO01000049
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>WENV180232984
OBCP01000049
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
96547
96623
+
Met
CAT
[ENA]
¢þ
>WENV180569738
OCLR01000388
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
35720
35796
+
Met
CAT
[ENA]
¢þ
>WENV180570682
OCLS01000397
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
35708
35784
+
Met
CAT
[ENA]
¢þ
>WENV180571464
OCLT01000119
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>WENV180573570
OCLW01000047
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>WENV180639758
OCRL01000117
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>WENV180640579
OCRM01000047
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>W141154784
AXLL01000113
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
10098
10174
+
Met
CAT
[ENA]
¡û
>PL191000843
CP031159
Deinococcus-Thermus
Deinococcus wulumuqiensis NEB 479 plasmid:pDrdA (CP031159)
152328
152252
-
Met
CAT
[ENA]
¡û
>W141561456
JHYL01000003
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
96585
96661
+
Met
CAT
[ENA]
¡û
>W141702063
JMLF01000008
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
110130
110054
-
Met
CAT
[ENA]
¡û
>C10105380
AE001825
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
60481
60557
+
Met
CAT
[Ensembl]
¡û
>C11107229
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1653060
1653136
+
Met
CAT
[Ensembl]
¡û
>C11107307
AE001825
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
60481
60557
+
Met
CAT
[Ensembl]
¡û
>C161082998
CP015082
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
163932
164008
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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