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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2139 (100 seq.)
>W1710946655
LOSD01000006
Betaproteobacteria
Achromobacter xylosoxidans [LOSD]
4366166
4366071
-
SeC
TCA
[ENA]
¡û
>W1711956616
NBTL01000001
Betaproteobacteria
Achromobacter xylosoxidans [NBTL]
503797
503702
-
SeC
TCA
[ENA]
¡û
>C172000156
CP019325
Betaproteobacteria
Achromobacter insolitus DSM 23807 [CP019325]
5937082
5937177
+
SeC
TCA
-
¡û
>WENV183729964
PJTR01000251
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
46848
46943
+
SeC
TCA
[ENA]
¢þ
>WENV183730925
PJTS01002100
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
760
665
-
SeC
TCA
[ENA]
¢þ
>WENV183733698
PJTY01012098
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
205
110
-
SeC
TCA
[ENA]
¢þ
>WENV183738405
PJUD01189396
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
164
259
+
SeC
TCA
[ENA]
¢þ
>WENV183738763
PJUE01000177
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
56376
56281
-
SeC
TCA
[ENA]
¢þ
>WENV183742025
PJUH01000076
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
33198
33293
+
SeC
TCA
[ENA]
¢þ
>WENV183742545
PJUI01000012
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
438737
438832
+
SeC
TCA
[ENA]
¢þ
>C181034348
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
4038992
4038897
-
SeC
TCA
-
¡û
>C181111307
CP025030
Betaproteobacteria
Achromobacter spanius DSM 23806 [CP025030]
930245
930150
-
SeC
TCA
-
¡û
>C181144550
CP026973
Betaproteobacteria
Achromobacter insolitus FDAARGOS_88 [CP026973]
4741165
4741070
-
SeC
TCA
-
¡û
>C181225562
LT906461
Betaproteobacteria
Bordetella hinzii NCTC13200 [LT906461]
264742
264837
+
SeC
TCA
-
¡û
>C191035866
CP025521
Betaproteobacteria
Bordetella avium Owl19 [CP025521]
3475410
3475505
+
Sec
TCA
-
¡û
>C191035926
CP025522
Betaproteobacteria
Bordetella avium JBBA [CP025522]
3531694
3531789
+
Sec
TCA
-
¡û
>C191084085
CP032084
Betaproteobacteria
Achromobacter sp. B7 [CP032084]
338969
339064
+
Sec
TCA
-
¡û
>C191129190
CP034689
Betaproteobacteria
Achromobacter spanius UQ283 [CP034689]
435463
435558
+
Sec
TCA
-
¡û
>C191205150
LR134302
Betaproteobacteria
Achromobacter spanius NCTC13519 [LR134302]
2951271
2951366
+
Sec
TCA
-
¡û
>C191208812
LR134361
Betaproteobacteria
Achromobacter insolitus NCTC13520 [LR134361]
332637
332732
+
Sec
TCA
-
¡û
>W142000809
JHEN01000161
Betaproteobacteria
Bordetella hinzii L60 [JHEN]
16669
16764
+
seC
TCA
[ENA]
¡û
>W142000811
JHEP01000036
Betaproteobacteria
Bordetella pseudohinzii 8-296-03 [JHEP]
407854
407759
-
seC
TCA
[ENA]
¡û
>W142000812
JHEP01000084
Betaproteobacteria
Bordetella pseudohinzii 8-296-03 [JHEP]
3932716
3932621
-
seC
TCA
[ENA]
¡û
>W142000814
JHER01000053
Betaproteobacteria
Bordetella hinzii 4161 [JHER]
48346
48441
+
seC
TCA
[ENA]
¡û
>W1910890691
NEVL01000001
Betaproteobacteria
Bordetella genomosp. 1 1 AU17610 [NEVL]
378323
378228
-
Sec
TCA
[ENA]
¡û
>W1910891153
NEVU01000001
Betaproteobacteria
Bordetella genomosp. 12 12 AU6712 [NEVU]
297411
297506
+
Sec
TCA
[ENA]
¡û
>W1911566209
PCOQ01000024
Betaproteobacteria
Achromobacter sp. MYb9 [PCOQ]
44509
44604
+
Sec
TCA
[ENA]
¡û
>W1911746121
QVSL01000001
Betaproteobacteria
Bordetella avium BA1 [QVSL]
918869
918774
-
Sec
TCA
[ENA]
¡û
>W1911746171
QVSM01000001
Betaproteobacteria
Bordetella avium BA19 [QVSM]
268886
268981
+
Sec
TCA
[ENA]
¡û
>W1911746297
QVSO01000003
Betaproteobacteria
Bordetella avium BA17 [QVSO]
268822
268917
+
Sec
TCA
[ENA]
¡û
>W1911746353
QVSP01000003
Betaproteobacteria
Bordetella avium BA16 [QVSP]
268714
268809
+
Sec
TCA
[ENA]
¡û
>W1911746411
QVSQ01000003
Betaproteobacteria
Bordetella avium BA15 [QVSQ]
297822
297727
-
Sec
TCA
[ENA]
¡û
>W1911746452
QVSR01000001
Betaproteobacteria
Bordetella avium BA14 [QVSR]
268626
268721
+
Sec
TCA
[ENA]
¡û
>W1911746564
QVST01000001
Betaproteobacteria
Bordetella avium BA12 [QVST]
273099
273194
+
Sec
TCA
[ENA]
¡û
>W1911746625
QVSU01000002
Betaproteobacteria
Bordetella avium BA11 [QVSU]
297786
297691
-
Sec
TCA
[ENA]
¡û
>W1911746735
QVSW01000002
Betaproteobacteria
Bordetella avium ATCC 35086 [QVSW]
297831
297736
-
Sec
TCA
[ENA]
¡û
>W1911746795
QVSX01000003
Betaproteobacteria
Bordetella avium BA8 [QVSX]
297965
297870
-
Sec
TCA
[ENA]
¡û
>W1911746839
QVSY01000001
Betaproteobacteria
Bordetella avium BA6 [QVSY]
333304
333399
+
Sec
TCA
[ENA]
¡û
>W1911746911
QVSZ01000002
Betaproteobacteria
Bordetella avium BA5 [QVSZ]
297786
297691
-
Sec
TCA
[ENA]
¡û
>W1911746958
QVTA01000001
Betaproteobacteria
Bordetella avium BA4 [QVTA]
631389
631294
-
Sec
TCA
[ENA]
¡û
>W1911747017
QVTB01000001
Betaproteobacteria
Bordetella avium BA3 [QVTB]
993102
993007
-
Sec
TCA
[ENA]
¡û
>W1911748831
QWFB01000045
Betaproteobacteria
Achromobacter sp. K91 [QWFB]
47279
47184
-
Sec
TCA
[ENA]
¡û
>W1810063627
PDUX01000005
Betaproteobacteria
Pusillimonas noertemannii DSM 10065 [PDUX]
185797
185702
-
Sec
TCA
[ENA]
¡û
>W1810089028
PGEK01000018
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
38834
38929
+
Sec
TCA
[ENA]
¡û
>W1810108831
PHGT01000004
Betaproteobacteria
Achromobacter xylosoxidans GAD3 [PHGT]
143600
143505
-
Sec
TCA
[ENA]
¡û
>W1810270675
PREU01000010
Betaproteobacteria
Achromobacter spanius 6 [PREU]
186162
186067
-
Sec
TCA
[ENA]
¡û
>W1810448795
PZMK01000472
Betaproteobacteria
Achromobacter xylosoxidans BHW-15 [PZMK]
6080
6175
+
Sec
TCA
[ENA]
¡û
>W1810576196
QENE01000009
Betaproteobacteria
Achromobacter xylosoxidans 5146 [QENE]
176257
176162
-
Sec
TCA
[ENA]
¡û
>W1810624818
QHHO01000040
Betaproteobacteria
Achromobacter sp. RW408 [QHHO]
343018
343113
+
Sec
TCA
[ENA]
¡û
>W1810692839
QLKW01000005
Betaproteobacteria
Bordetella avium HAMBI_2160 [QLKW]
9590
9495
-
Sec
TCA
[ENA]
¡û
>W1810720822
QNRM01000019
Betaproteobacteria
Achromobacter marplatensis CECT 7342 [QNRM]
55116
55021
-
Sec
TCA
[ENA]
¡û
>W1810917550
QVXO01000010
Betaproteobacteria
Achromobacter xylosoxidans GD003A [QVXO]
132683
132778
+
Sec
TCA
[ENA]
¡û
>W1520000051
BBVB01000015
Betaproteobacteria
Bordetella bronchiseptica KU1201 [BBVB]
398399
398494
+
SeC
TCA
[ENA]
¡û
>W1520001212
JTAT01000001
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_88 [JTAT]
4740003
4739908
-
SeC
TCA
[ENA]
¡û
>W1520001295
JWMK01000014
Betaproteobacteria
Bordetella avium Nh1210 [JWMK]
9480
9385
-
SeC
TCA
[ENA]
¡û
>C11200001
CP002287
Betaproteobacteria
Achromobacter xylosoxidans A8 [CP002287]
342898
342993
+
SeC
TCA
[Ensembl]
¡û
>C11200028
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
2522502
2522597
+
SeC
TCA
[Ensembl]
¡û
>W1511591835
LBHW01000020
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
76041
76136
+
SeC
TCA
[ENA]
¡û
>W1511707474
LGVG01000011
Betaproteobacteria
Achromobacter spanius CGMCC9173 [LGVG]
73529
73434
-
SeC
TCA
[ENA]
¡û
>C162000120
CP016440
Betaproteobacteria
Bordetella pseudohinzii HI4681 [CP016440]
280253
280348
+
SeC
TCA
-
¡û
>C162000139
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
1016771
1016676
-
SeC
TCA
[Ensembl]
¡û
>W1610077094
BCZG01000016
Betaproteobacteria
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 [BCZG]
26764
26859
+
SeC
TCA
[ENA]
¡û
>W1610093586
CYTC01000001
Betaproteobacteria
Achromobacter kerstersii ATCC31444 [CYTC]
1001274
1001369
+
SeC
TCA
[ENA]
¡û
>W1610093706
CYTE01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608612 [CYTE]
28112
28207
+
SeC
TCA
[ENA]
¡û
>W1610093759
CYTF01000016
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608624 [CYTF]
137288
137193
-
SeC
TCA
[ENA]
¡û
>W1610093869
CYTH01000010
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608611 [CYTH]
256481
256386
-
SeC
TCA
[ENA]
¡û
>W1610093964
CYTJ01000010
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608618 [CYTJ]
26459
26554
+
SeC
TCA
[ENA]
¡û
>W1610094090
CYTM01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608620 [CYTM]
343962
344057
+
SeC
TCA
[ENA]
¡û
>W1610094392
CYTS01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608619 [CYTS]
26451
26546
+
SeC
TCA
[ENA]
¡û
>W121111224
ALJE01000042
Betaproteobacteria
Achromobacter marplatensis HLE [ALJE]
126825
126730
-
SeC
TCA
[ENA]
¡û
>C131019718
HE798385
Betaproteobacteria
Achromobacter xylosoxidans NH44784-1996 [HE798385]
1950034
1949939
-
SeC
TCA
-
¡û
>W1610802657
LOSD01000006
Betaproteobacteria
Achromobacter xylosoxidans [LOSD]
4366166
4366071
-
SeC
TCA
[ENA]
¡û
>W1620000122
BBDD01002406
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
533
438
-
SeC
TCA
[ENA]
¡û
>W1620000224
BCWN01000023
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
46764
46669
-
SeC
TCA
[ENA]
¡û
>W1620000265
CYTK01000005
Betaproteobacteria
Achromobacter aegrifaciens 2789STDY5608625 [CYTK]
215114
215019
-
SeC
TCA
[ENA]
¡û
>W1620000269
CYTV01000003
Betaproteobacteria
Bordetella pseudohinzii 2789STDY5608636 [CYTV]
148880
148785
-
SeC
TCA
[ENA]
¡û
>W1620000926
FKBS01000014
Betaproteobacteria
Bordetella ansorpii [FKBS]
155479
155574
+
SeC
TCA
[ENA]
¡û
>W1620000935
FKIF01000002
Betaproteobacteria
Bordetella ansorpii [FKIF]
52510
52415
-
SeC
TCA
[ENA]
¡û
>W1620001622
LRSQ01000037
Betaproteobacteria
Bordetella pseudohinzii [LRSQ]
30616
30711
+
SeC
TCA
[ENA]
¡û
>W1620001728
LWDT01000001
Betaproteobacteria
Achromobacter insolitus AR476-2 [LWDT]
390881
390976
+
SeC
TCA
[ENA]
¡û
>W1620001772
LXPX01000108
Betaproteobacteria
Achromobacter insolitus KCJK1731 [LXPX]
46317
46222
-
SeC
TCA
[ENA]
¡û
>W1720000087
BBDD01002406
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
533
438
-
SeC
TCA
[ENA]
¡û
>W1720000194
BCWN01000023
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
46764
46669
-
SeC
TCA
[ENA]
¡û
>W1720000242
CYTK01000005
Betaproteobacteria
Achromobacter aegrifaciens 2789STDY5608625 [CYTK]
215114
215019
-
SeC
TCA
[ENA]
¡û
>W1720000246
CYTV01000003
Betaproteobacteria
Bordetella pseudohinzii 2789STDY5608636 [CYTV]
148880
148785
-
SeC
TCA
[ENA]
¡û
>W1720000891
FKBS01000014
Betaproteobacteria
Bordetella ansorpii [FKBS]
155479
155574
+
SeC
TCA
[ENA]
¡û
>W1720000900
FKIF01000002
Betaproteobacteria
Bordetella ansorpii [FKIF]
52510
52415
-
SeC
TCA
[ENA]
¡û
>W1720002076
LRSQ01000037
Betaproteobacteria
Bordetella pseudohinzii [LRSQ]
30616
30711
+
SeC
TCA
[ENA]
¡û
>W1720002209
LWDT01000001
Betaproteobacteria
Achromobacter insolitus AR476-2 [LWDT]
390881
390976
+
SeC
TCA
[ENA]
¡û
>W1720002536
LXPX01000108
Betaproteobacteria
Achromobacter insolitus KCJK1731 [LXPX]
46317
46222
-
SeC
TCA
[ENA]
¡û
>W1720002573
LYQJ01000052
Betaproteobacteria
Achromobacter insolitus KCJK1724 [LYQJ]
45984
45889
-
SeC
TCA
[ENA]
¡û
>W1720003183
MTLG01000125
Betaproteobacteria
Achromobacter xylosoxidans [MTLG]
394987
395082
+
SeC
TCA
[ENA]
¡û
>W1720003184
MTLI01000005
Betaproteobacteria
Achromobacter xylosoxidans [MTLI]
10560
10465
-
SeC
TCA
[ENA]
¡û
>W1720004015
NJIF01000002
Betaproteobacteria
Achromobacter insolitus [NJIF]
386954
387049
+
SeC
TCA
[ENA]
¡û
>W1710096749
CYTE01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608612 [CYTE]
28112
28207
+
SeC
TCA
[ENA]
¡û
>W1710096802
CYTF01000016
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608624 [CYTF]
137288
137193
-
SeC
TCA
[ENA]
¡û
>W1710096912
CYTH01000010
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608611 [CYTH]
256481
256386
-
SeC
TCA
[ENA]
¡û
>W1710097007
CYTJ01000010
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608618 [CYTJ]
26459
26554
+
SeC
TCA
[ENA]
¡û
>W1710097133
CYTM01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608620 [CYTM]
343962
344057
+
SeC
TCA
[ENA]
¡û
>W1710097393
CYTS01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608619 [CYTS]
26451
26546
+
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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