This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.217772 (129 seq.)
>W131144996
AQFU01000102
Bacillota
Schaedlerella arabinosiphila ASF502 [AQFU]
1118
1192
+
Met
CAT
[ENA]
¡û
>W131195782
ASSV01000041
Bacillota
Lachnospiraceae bacterium M18-1 [ASSV]
118469
118395
-
Met
CAT
[ENA]
¡û
>W131238338
BAHR02000209
Bacillota
Hungatella hathewayi VE202-04 [BAHR]
581
654
+
Met
CAT
[ENA]
¡û
>W131043668
AMPQ01000043
Bacillota
Salimicrobium jeotgali MJ3 [AMPQ]
550
626
+
Met
CAT
[ENA]
¡û
>WENV180140811
OATU01000689
[OATU] human gut metagenome; faeces
416
489
+
fMet
CAT
[ENA]
¡û
>WENV180148699
OAUK01001563
[OAUK] human gut metagenome; faeces
3839
3912
+
fMet
CAT
[ENA]
¡û
>WENV180165411
OAVK01001226
[OAVK] human gut metagenome; faeces
8576
8503
-
fMet
CAT
[ENA]
¡û
>WENV180334956
OBLF01106995
[OBLF] metagenome; feces
120
193
+
fMet
CAT
[ENA]
¡û
>WENV180343698
OBLK01064397
[OBLK] soil metagenome; Clay
529
453
-
fMet
CAT
[ENA]
¡û
>WENV180409726
OBUV01000161
[OBUV] human gut metagenome; faeces
547
620
+
fMet
CAT
[ENA]
¡û
>WENV180414082
OBVC01000887
[OBVC] human gut metagenome; faeces
239
312
+
fMet
CAT
[ENA]
¡û
>WENV180453895
OBXM01001689
[OBXM] human gut metagenome; faeces
12198
12125
-
fMet
CAT
[ENA]
¡û
>WENV180497712
OCAE01029267
[OCAE] human gut metagenome; faeces
137
64
-
fMet
CAT
[ENA]
¡û
>WENV180504981
OCAO01000351
[OCAO] human gut metagenome; faeces
547
620
+
fMet
CAT
[ENA]
¡û
>WENV180522337
OCHG01000260
[OCHG] human gut metagenome; human gut
58793
58720
-
fMet
CAT
[ENA]
¡û
>WENV180533785
OCHM01000135
[OCHM] human gut metagenome; human gut
120
193
+
fMet
CAT
[ENA]
¡û
>WENV180555116
OCJO01072342
[OCJO] human gut metagenome; human gut
275
202
-
fMet
CAT
[ENA]
¡û
>WENV180631836
OCQY01081929
[OCQY] human gut metagenome; human gut
193
266
+
fMet
CAT
[ENA]
¡û
>WENV180674665
OCVV011353472
[OCVV] gut metagenome; gut
511
585
+
fMet
CAT
[ENA]
¡û
>WENV180674670
OCVV011353472
[OCVV] gut metagenome; gut
511
585
+
fMet
CAT
[ENA]
¡û
>WENV180871275
ODLN01035009
[ODLN] human metagenome; G_DNA_Stool
452
525
+
fMet
CAT
[ENA]
¡û
>WENV181243678
OFFH01000524
[OFFH] mouse gut metagenome; faeces
4029
3955
-
fMet
CAT
[ENA]
¡û
>WENV181246104
OFFJ01008363
[OFFJ] mouse gut metagenome; faeces
1249
1323
+
fMet
CAT
[ENA]
¡û
>WENV181258670
OFFV01001535
[OFFV] mouse gut metagenome; faeces
9746
9820
+
fMet
CAT
[ENA]
¡û
>WENV181276775
OFGK01036907
[OFGK] mouse gut metagenome; faeces
688
761
+
fMet
CAT
[ENA]
¡û
>WENV181280763
OFGO01001638
[OFGO] mouse gut metagenome; faeces
3191
3117
-
fMet
CAT
[ENA]
¡û
>WENV181284198
OFGR01000264
[OFGR] mouse gut metagenome; faeces
24369
24296
-
fMet
CAT
[ENA]
¡û
>WENV181286931
OFGX01000174
[OFGX] mouse gut metagenome; faeces
50046
50120
+
fMet
CAT
[ENA]
¡û
>WENV181287342
OFGX01003551
[OFGX] mouse gut metagenome; faeces
2790
2863
+
fMet
CAT
[ENA]
¡û
>WENV181298769
OFHM01000095
[OFHM] mouse gut metagenome; faeces
36998
37071
+
fMet
CAT
[ENA]
¡û
>WENV181298864
OFHM01000220
[OFHM] mouse gut metagenome; faeces
3195
3121
-
fMet
CAT
[ENA]
¡û
>WENV181300496
OFHN01001887
[OFHN] mouse gut metagenome; faeces
3635
3561
-
fMet
CAT
[ENA]
¡û
>WENV181302326
OFHO01011475
[OFHO] mouse gut metagenome; faeces
3193
3119
-
fMet
CAT
[ENA]
¡û
>WENV181348913
OFMN01005513
[OFMN] human gut metagenome; human gut
4310
4237
-
fMet
CAT
[ENA]
¡û
>WENV181526555
OGHJ01013789
[OGHJ] metagenome; Human gut stool
2637
2710
+
fMet
CAT
[ENA]
¡û
>WENV181600227
OGLD01002295
[OGLD] metagenome; Human gut stool
219
292
+
fMet
CAT
[ENA]
¡û
>WENV181632615
OGMT01045696
[OGMT] metagenome; Human gut stool
222
295
+
fMet
CAT
[ENA]
¡û
>WENV181860427
OGWR01000900
[OGWR] human gut metagenome; faeces
4239
4312
+
fMet
CAT
[ENA]
¡û
>WENV181872198
OGWZ01001599
[OGWZ] human gut metagenome; faeces
120
193
+
fMet
CAT
[ENA]
¡û
>WENV181900845
OGXV01071687
[OGXV] human gut metagenome; faeces
209
282
+
fMet
CAT
[ENA]
¡û
>WENV181933956
OGYT01000504
[OGYT] human gut metagenome; faeces
120
193
+
fMet
CAT
[ENA]
¡û
>WENV181948542
OGZE01007128
[OGZE] human gut metagenome; faeces
2642
2715
+
fMet
CAT
[ENA]
¡û
>WENV181981458
OHAG01002483
[OHAG] human gut metagenome; faeces
10033
9960
-
fMet
CAT
[ENA]
¡û
>W141215694
AZUI01000001
Bacillota
Lacrimispora indolis DSM 755 [AZUI]
1847804
1847731
-
Met
CAT
[ENA]
¡û
>W141217012
AZVH01000002
Bacillota
Lacrimispora sphenoides DSM 4024 [AZVH]
4782336
4782409
+
Met
CAT
[ENA]
¡û
>W141224293
BAHY01000009
Bacillota
Hungatella hathewayi VE202-11 [BAHY]
579
652
+
Met
CAT
[ENA]
¡û
>WENV182431727
OIIJ01001707
[OIIJ] human gut metagenome; human gut
1775
1699
-
fMet
CAT
[ENA]
¡û
>WENV182433665
OIIU01007588
[OIIU] human gut metagenome; human gut
330
254
-
fMet
CAT
[ENA]
¡û
>WENV182613112
OJJZ01000469
[OJJZ] metagenome; faeces
705
778
+
fMet
CAT
[ENA]
¡û
>WENV182621825
OJKJ01001154
[OJKJ] metagenome; faeces
9921
9848
-
fMet
CAT
[ENA]
¡û
>WENV182628181
OJKQ01003213
[OJKQ] metagenome; faeces
666
739
+
fMet
CAT
[ENA]
¡û
>WENV182818755
OJZY01000147
[OJZY] human gut metagenome; human gut
102
175
+
fMet
CAT
[ENA]
¡û
>WENV182857884
OKOB01000009
[OKOB] human gut metagenome; human gut
63735
63808
+
fMet
CAT
[ENA]
¡û
>WENV182938288
OKVD01001834
[OKVD] human gut metagenome; human gut
3867
3794
-
fMet
CAT
[ENA]
¡û
>WENV182950225
OKVR01000894
[OKVR] human gut metagenome; human gut
586
659
+
fMet
CAT
[ENA]
¡û
>WENV182952089
OKVV01002213
[OKVV] human gut metagenome; human gut
124
197
+
fMet
CAT
[ENA]
¡û
>WENV182952422
OKVW01000642
[OKVW] human gut metagenome; human gut
237
310
+
fMet
CAT
[ENA]
¡û
>WENV182990228
OLAL01027353
[OLAL] human gut metagenome; human gut
487
414
-
fMet
CAT
[ENA]
¡û
>WENV183001637
OLCK01005931
[OLCK] human gut metagenome; human gut
318
242
-
fMet
CAT
[ENA]
¡û
>WENV183004942
OLCX01001307
[OLCX] human gut metagenome; human gut
97
173
+
fMet
CAT
[ENA]
¡û
>WENV183005178
OLCY01002593
[OLCY] human gut metagenome; human gut
1441
1517
+
fMet
CAT
[ENA]
¡û
>WENV183064585
OLIH01018374
[OLIH] metagenome; faeces
176
251
+
fMet
CAT
[ENA]
¡û
>WENV183104746
OLNK01001503
[OLNK] human gut metagenome; faeces
17083
17010
-
fMet
CAT
[ENA]
¡û
>WENV183495554
OMGL01003417
[OMGL] human gut metagenome; human gut
6935
6862
-
fMet
CAT
[ENA]
¡û
>WENV183498999
OMGP01001528
[OMGP] human gut metagenome; human gut
120
193
+
fMet
CAT
[ENA]
¡û
>WENV183746127
POVV01009476
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
684
757
+
fMet
CAT
[ENA]
¡û
>WENV183785281
PPYF01271266
[PPYF] human gut metagenome; stool from patient with Crohn's disease
9886
9813
-
fMet
CAT
[ENA]
¡û
>WENV170028296
CDYE01006619
[CDYE] gut metagenome; human stools
1844
1771
-
Met
CAT
[ENA]
¡û
>WENV170703175
LKMJ01007619
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9953
10029
+
Met
CAT
[ENA]
¡û
>WENV170703376
LKMJ01010422
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8362
8438
+
Met
CAT
[ENA]
¡û
>WENV170717776
LSQX01049467
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1892
1816
-
Met
CAT
[ENA]
¡û
>W141452236
JFBV01000001
Bacillota
Clostridium sp. ASBs410 [JFBV]
1073355
1073428
+
Met
CAT
[ENA]
¡û
>C191003048
AP018535
Bacillota
Lachnospiraceae bacterium Choco86 [AP018535]
37965
38039
+
Met
CAT
-
¡û
>W141806591
JPME01000017
Bacillota
Lacrimispora celerecrescens [JPME]
261
334
+
Met
CAT
[ENA]
¡û
>W09125614
ACIO01000152
Bacillota
Hungatella hathewayi DSM 13479 [ACIO]
91
164
+
Met
CAT
[ENA]
¡û
>W1910501339
FYAL01000012
Bacillota
[Clostridium] celerecrescens [FYAL]
166072
165999
-
Met
CAT
[ENA]
¡û
>W1911491505
OAOF01000015
Bacillota
[Clostridium] amygdalinum [OAOF]
624
697
+
Met
CAT
[ENA]
¡û
>W1911702734
QOHO01000114
Bacillota
Clostridium sp. PI-S10-A1B [QOHO]
516
589
+
Met
CAT
[ENA]
¡û
>W1810044365
BHGK01000001
Bacillota
Mediterraneibacter butyricigenes KCTC 15684 [BHGK]
1494771
1494697
-
Met
CAT
[ENA]
¡û
>W1810802711
QRQF01000041
Bacillota
Hungatella hathewayi AF33-11 [QRQF]
100
173
+
Met
CAT
[ENA]
¡û
>W1810823573
QSGX01000023
Bacillota
Hungatella hathewayi AM39-16AC [QSGX]
551
624
+
Met
CAT
[ENA]
¡û
>W1810831757
QSON01000021
Bacillota
Hungatella hathewayi TM09-12 [QSON]
507
580
+
Met
CAT
[ENA]
¡û
>W1810831758
QSON01000021
Bacillota
Hungatella hathewayi TM09-12 [QSON]
722
795
+
Met
CAT
[ENA]
¡û
>W1810835484
QSRE01000078
Bacillota
Hungatella hathewayi TF09-11AC [QSRE]
458
531
+
Met
CAT
[ENA]
¡û
>W1810841561
QSVK01000012
Bacillota
Dorea sp. OM02-2LB [QSVK]
473
547
+
Met
CAT
[ENA]
¡û
>W1810842129
QSVU01000011
Bacillota
Hungatella hathewayi OM02-1 [QSVU]
88
161
+
Met
CAT
[ENA]
¡û
>W1810858580
QTJW01000008
Bacillota
Hungatella hathewayi AF19-13AC [QTJW]
300750
300677
-
Met
CAT
[ENA]
¡û
>W1810866271
QTXO01000006
Bacillota
Clostridium sp. AF12-41 [QTXO]
427
500
+
Met
CAT
[ENA]
¡û
>W1810872733
QUDY01000014
Bacillota
Clostridium sp. AF35-15 [QUDY]
72985
72912
-
Met
CAT
[ENA]
¡û
>W1810873169
QUEG01000011
Bacillota
Clostridium sp. AF32-7AC [QUEG]
72713
72640
-
Met
CAT
[ENA]
¡û
>W1810874540
QUFH01000010
Bacillota
Clostridium sp. AF27-5AA [QUFH]
116450
116377
-
Met
CAT
[ENA]
¡û
>W1810875175
QUFT01000006
Bacillota
Clostridium sp. AF24-2LB [QUFT]
155188
155115
-
Met
CAT
[ENA]
¡û
>W1810875511
QUFZ01000018
Bacillota
Clostridium sp. AF22-10 [QUFZ]
61693
61620
-
Met
CAT
[ENA]
¡û
>W1810878029
QUHX01000007
Bacillota
Clostridium sp. AF02-29 [QUHX]
171242
171169
-
Met
CAT
[ENA]
¡û
>W1810878609
QUIH01000008
Bacillota
Clostridium sp. AM43-3BH [QUIH]
871
944
+
Met
CAT
[ENA]
¡û
>W1810880377
QUJN01000006
Bacillota
Clostridium sp. AM28-20LB [QUJN]
433
506
+
Met
CAT
[ENA]
¡û
>W1810882030
QUKS01000005
Bacillota
Clostridium sp. TF06-15AC [QUKS]
609
682
+
Met
CAT
[ENA]
¡û
>W1810883713
QULZ01000037
Bacillota
Clostridium sp. OF13-4 [QULZ]
11748
11675
-
Met
CAT
[ENA]
¡û
>W2010248787
CABIXC020000014
Bacillota
Hungatella hathewayi [CABIXC]
553
626
+
fMet
CAT
[ENA]
¡û
>W2010255339
CABJBJ020000026
Bacillota
Hungatella hathewayi [CABJBJ]
96490
96417
-
fMet
CAT
[ENA]
¡û
>W2010256152
CABJBZ020000004
Bacillota
Lachnospiraceae bacterium [CABJBZ]
441
515
+
fMet
CAT
[ENA]
¡û
>W2010421071
FYAL01000012
Bacillota
[Clostridium] celerecrescens [FYAL]
166072
165999
-
fMet
CAT
[ENA]
¡û
>W2011152456
OAOF01000015
Bacillota
[Clostridium] amygdalinum [OAOF]
624
697
+
fMet
CAT
[ENA]
¡û
>W2011279660
QOHO01000114
Bacillota
Clostridium sp. PI-S10-A1B [QOHO]
516
589
+
fMet
CAT
[ENA]
¡û
>W2011337828
QXWY01000187
Bacillota
Lachnospiraceae bacterium X54 [QXWY]
535
609
+
fMet
CAT
[ENA]
¡û
>W2011578286
SGXF01000001
Bacillota
Cuneatibacter caecimuris DSM 29486 [SGXF]
1334086
1334011
-
fMet
CAT
[ENA]
¡û
>W2011626845
SLZZ01000016
Bacillota
Muricomes intestini DSM 29489 [SLZZ]
79290
79216
-
fMet
CAT
[ENA]
¡û
>W2011670053
SPHP01000043
Bacillota
Clostridium sp. 1001175st1 A10 1001175st1_A10 [SPHP]
19116
19043
-
fMet
CAT
[ENA]
¡û
>W2011686123
SRYA01000026
Bacillota
Lachnospiraceae bacterium NM01_1-7b [SRYA]
38285
38358
+
fMet
CAT
[ENA]
¡û
>W2110245585
JACOPF010000003
Bacillota
Mediterraneibacter sp. NSJ-55 [JACOPF]
698
772
+
fMet
CAT
[ENA]
¡û
>W2110351961
JADNGZ010000055
Bacillota
Hungatella hathewayi 1001285H_161024_A12 [JADNGZ]
593
666
+
fMet
CAT
[ENA]
¡û
>C211174876
CP063304
Bacillota
Blautia sp. LZLJ-3 [CP063304]
923710
923784
+
fMet
CAT
-
¡û
>C211280232
CP070896
Bacillota
Hungatella xylanolytica ASCUSBR21 [CP070896]
2860040
2860113
+
fMet
CAT
-
¡û
>C231449982
CP102274
Bacillota
Hungatella hathewayi DSM 13479 [CP102274]
22521
22594
+
fMet
CAT
-
¡û
>W2110799425
WQPR01000146
Bacillota
Hungatella hathewayi MCC342 [WQPR]
103246
103173
-
fMet
CAT
[ENA]
¡û
>W2130004217
CACRUH010000080
Bacillota
Hungatella hathewayi [CACRUH]
705
778
+
fMet
CAT
[ENA]
¡û
>C10104052
CP002109
Bacillota
[Clostridium] saccharolyticum WM1 [CP002109]
24322
24395
+
Met
CAT
[Ensembl]
¡û
>W1511580759
LARO01000115
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
179
106
-
Met
CAT
[ENA]
¡û
>W1610047861
BBDR01000008
Bacillota
Clostridium sp. NkU-1 [BBDR]
183190
183117
-
Met
CAT
[ENA]
¡û
>W1610058172
BBZQ01000005
Bacillota
Clostridia bacterium UC5.1-1F8 [BBZQ]
579
652
+
Met
CAT
[ENA]
¡û
>W1610103374
CZAZ01000017
Bacillota
Hungatella hathewayi [CZAZ]
238
311
+
Met
CAT
[ENA]
¡û
>W1610188155
FBWN01000172
Bacillota
Clostridium sp. C105KSO15 [FBWN]
76538
76465
-
Met
CAT
[ENA]
¡û
>WENV083521
BAAX01031531
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
274
198
-
Met
CAT
[ENA]
>W1710044371
BBDR01000008
Bacillota
Clostridium sp. NkU-1 [BBDR]
183190
183117
-
Met
CAT
[ENA]
¡û
>W1710054931
BBZQ01000005
Bacillota
Clostridia bacterium UC5.1-1F8 [BBZQ]
579
652
+
Met
CAT
[ENA]
¡û
>W1710106129
CZAZ01000017
Bacillota
Hungatella hathewayi [CZAZ]
238
311
+
Met
CAT
[ENA]
¡û
>W1710189771
FBWN01000172
Bacillota
Clostridium sp. C105KSO15 [FBWN]
76538
76465
-
Met
CAT
[ENA]
¡û
>W1710554689
FOIP01000001
Bacillota
Lacrimispora sphenoides [FOIP]
1398051
1397978
-
Met
CAT
[ENA]
¡û
>W1710598581
FTOC01000005
Bacillota
Salimicrobium flavidum [FTOC]
679
755
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK