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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218290 (18 seq.)
>W1711138222
LVCP01000004
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
182
99
-
Tyr
GTA
[ENA]
¡û
>W1711229025
LXYB01000003
Mycoplasmatota
Acholeplasma laidlawii [LXYB]
180
97
-
Tyr
GTA
[ENA]
¡û
>W1711274074
LZGE01000001
Mycoplasmatota
Acholeplasma laidlawii [LZGE]
248920
249003
+
Tyr
GTA
[ENA]
¡û
>W1711274106
LZGF01000001
Mycoplasmatota
Acholeplasma laidlawii [LZGF]
246772
246855
+
Tyr
GTA
[ENA]
¡û
>W131221419
AUAL01000024
Mycoplasmatota
Haploplasma axanthum ATCC 25176 [AUAL]
31976
32059
+
Tyr
GTA
[ENA]
¡û
>W1711437736
MIPS01000012
Mycoplasmatota
Acholeplasma laidlawii [MIPS]
16574
16657
+
Tyr
GTA
[ENA]
¡û
>C08000437
CP000896
Mycoplasmatota
Acholeplasma laidlawii PG-8A [CP000896]
73228
73311
+
Tyr
GTA
[Ensembl]
¡û
>W141278629
JAFR01000008
Mycoplasmatota
Acholeplasma granularum ATCC 19168 [JAFR]
163437
163520
+
Tyr
GTA
[ENA]
¡û
>WENV170646407
JQGR01002245
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
44
127
+
Tyr
GTA
[ENA]
¢þ
>WENV170704486
LLEK01001228
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1883
1800
-
Tyr
GTA
[ENA]
¢þ
>C181029184
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
225607
225690
+
Tyr
GTA
-
¡û
>C181029220
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
205444
205527
+
Tyr
GTA
-
¡û
>C181213415
LS483439
Mycoplasmatota
Acholeplasma laidlawii NCTC10116 [LS483439]
71600
71683
+
Tyr
GTA
-
¡û
>C191218823
LR215048
Mycoplasmatota
Haploplasma axanthum NCTC10138 [LR215048]
60722
60639
-
Tyr
GTA
-
¡û
>W1910884384
NELN02000003
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
363720
363803
+
Tyr
GTA
[ENA]
¡û
>W1910884416
NELO02000003
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
363721
363804
+
Tyr
GTA
[ENA]
¡û
>W1810787488
QRDS01000002
Mycoplasmatota
Acholeplasma laidlawii DSM 23060 [QRDS]
275
192
-
Tyr
GTA
[ENA]
¡û
>W1610949308
LVCP01000004
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
182
99
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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