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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218425 (83 seq.)
>W1710821627
LKTU01000016
Betaproteobacteria
Variovorax paradoxus [LKTU]
142883
142959
+
Pro
TGG
[ENA]
¡û
>W1710821798
LKTX01000073
Betaproteobacteria
Variovorax paradoxus [LKTX]
40411
40487
+
Pro
TGG
[ENA]
¡û
>W1710821851
LKTY01000075
Betaproteobacteria
Variovorax paradoxus [LKTY]
40412
40488
+
Pro
TGG
[ENA]
¡û
>W1710821895
LKTZ01000065
Betaproteobacteria
Variovorax paradoxus [LKTZ]
43730
43806
+
Pro
TGG
[ENA]
¡û
>W1711386522
MEFM01000059
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
378863
378939
+
Pro
TGG
[ENA]
¡û
>W1711387501
MEGR01000097
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
373509
373433
-
Pro
TGG
[ENA]
¡û
>W131180360
ARNA01000050
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
738138
738214
+
Pro
TGG
[ENA]
¡û
>W131214384
ATUC01000035
Betaproteobacteria
Variovorax sp. JGI 001013-H06 [ATUC]
4354
4430
+
Pro
TGG
[ENA]
¡û
>WENV180019580
FTCD01000119
[FTCD] metagenome; soil
952
1028
+
Pro
TGG
[ENA]
¡û
>WENV181372075
OFQW01013537
[OFQW] wastewater metagenome; Exp Tend NO 90WW
931
855
-
Pro
TGG
[ENA]
¡û
>WENV183511073
OMHV01005726
[OMHV] human oral metagenome; human oral
308
232
-
Pro
TGG
[ENA]
¡û
>WENV183731166
PJTS01014906
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
268
344
+
Pro
TGG
[ENA]
¡û
>WENV183735660
PJUB01000372
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
5476
5400
-
Pro
TGG
[ENA]
¡û
>WENV183736339
PJUC01000908
[PJUC] soil metagenome; Soil enriched on filter paper
5496
5420
-
Pro
TGG
[ENA]
¡û
>WENV183741391
PJUG01000002
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
217523
217447
-
Pro
TGG
[ENA]
¡û
>WENV183741898
PJUH01000003
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
596551
596627
+
Pro
TGG
[ENA]
¡û
>WENV183744405
PJUK01017899
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
231
155
-
Pro
TGG
[ENA]
¡û
>WENV170557975
CXWL01044768
[CXWL] groundwater metagenome; biofilm material
1847
1923
+
Pro
TGG
[ENA]
¡û
>WENV171003362
NNBT01006790
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
443
519
+
Pro
TGG
[ENA]
¡û
>WENV171003616
NNBU01000823
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
727
651
-
Pro
TGG
[ENA]
¡û
>W141558066
JHVQ01000003
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
865973
865897
-
Pro
TGG
[ENA]
¡û
>W09119927
ACEE01000018
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
44115
44191
+
Pro
TGG
[ENA]
¡û
>C141002576
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
2595754
2595678
-
Pro
TGG
[Ensembl]
¡û
>W1910792813
MRCN01000002
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
529210
529134
-
Pro
TGG
[ENA]
¡û
>C09111125
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2460750
2460674
-
Pro
TGG
[Ensembl]
¡û
>W1911496697
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4337958
4338034
+
Pro
TGG
[ENA]
¡û
>W1810072210
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
447106
447182
+
Pro
TGG
[ENA]
¡û
>W1810486649
QAYA01000001
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
264446
264370
-
Pro
TGG
[ENA]
¡û
>W1810577504
QEOH01000001
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
359772
359696
-
Pro
TGG
[ENA]
¡û
>W1810672520
QJTM01000001
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
264446
264370
-
Pro
TGG
[ENA]
¡û
>W1810676088
QKLT01000001
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
264446
264370
-
Pro
TGG
[ENA]
¡û
>SRA1015788
SRR023846.200981
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
13
89
+
Pro
TGG
[SRA]
>SRA1016479
SRR023846.522768
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
13
89
+
Pro
TGG
[SRA]
>W2010108359
BKDH01000001
Betaproteobacteria
Variovorax boronicumulans HAB-30 [BKDH]
1827378
1827302
-
Pro
TGG
[ENA]
¡û
>W2010308734
CABWKX010000018
Betaproteobacteria
Burkholderiales bacterium 8X [CABWKX]
510712
510788
+
Pro
TGG
[ENA]
¡û
>W2010609237
JABMJG010000002
Betaproteobacteria
Variovorax sp. SG517 [JABMJG]
33995
33919
-
Pro
TGG
[ENA]
¡û
>W2010609283
JABMJH010000001
Betaproteobacteria
Variovorax sp. SG533 [JABMJH]
1107624
1107548
-
Pro
TGG
[ENA]
¡û
>W2010727648
JACIFZ010000002
Betaproteobacteria
Variovorax guangxiensis 34/80 [JACIFZ]
1306564
1306640
+
Pro
TGG
[ENA]
¡û
>W2010901275
MRCN01000002
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
529210
529134
-
Pro
TGG
[ENA]
¡û
>W2011157601
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4337958
4338034
+
Pro
TGG
[ENA]
¡û
>W2011494446
RWKH01000008
Betaproteobacteria
Variovorax sp. DXTD-1 [RWKH]
205269
205193
-
Pro
TGG
[ENA]
¡û
>W2011494487
RWKI01000001
Betaproteobacteria
Variovorax sp. MHTC-1 [RWKI]
9290
9214
-
Pro
TGG
[ENA]
¡û
>W2011495743
RXFQ01000009
Betaproteobacteria
Variovorax sp. 502 [RXFQ]
103581
103657
+
Pro
TGG
[ENA]
¡û
>W2011495875
RXFT01000001
Betaproteobacteria
Variovorax guangxiensis DSM 27352 [RXFT]
484048
483972
-
Pro
TGG
[ENA]
¡û
>W2011496208
RXHT01000006
Betaproteobacteria
Variovorax sp. 369 [RXHT]
121874
121950
+
Pro
TGG
[ENA]
¡û
>W2011539112
SCNM01000025
Betaproteobacteria
Variovorax sp. 3P27G3 [SCNM]
76811
76887
+
Pro
TGG
[ENA]
¡û
>W2011577713
SGWS01000004
Betaproteobacteria
Variovorax sp. BK460 [SGWS]
68334
68258
-
Pro
TGG
[ENA]
¡û
>W2011620210
SLVO01000001
Betaproteobacteria
Variovorax sp. BK151 [SLVO]
521063
520987
-
Pro
TGG
[ENA]
¡û
>W2011624459
SLYJ01000001
Betaproteobacteria
Variovorax sp. GV051 [SLYJ]
264446
264370
-
Pro
TGG
[ENA]
¡û
>W2011626055
SLZJ01000005
Betaproteobacteria
Variovorax sp. BK370 [SLZJ]
287112
287036
-
Pro
TGG
[ENA]
¡û
>W2011971323
VCCD02000001
Betaproteobacteria
Variovorax sp. KBS0712 [VCCD]
1019928
1019852
-
Pro
TGG
[ENA]
¡û
>W2012048060
VIWE01000002
Betaproteobacteria
Variovorax sp. 1180 [VIWE]
314722
314646
-
Pro
TGG
[ENA]
¡û
>W2110079463
CAIGKF010000017
Betaproteobacteria
Variovorax paradoxus [CAIGKF]
3765
3689
-
Pro
TGG
[ENA]
¡û
>W2110268677
JACVBS010000009
Betaproteobacteria
Variovorax sp. VRV01 [JACVBS]
24048
23972
-
Pro
TGG
[ENA]
¡û
>W2110408617
JAEFCB010000001
Betaproteobacteria
Variovorax sp. IB41 [JAEFCB]
797484
797560
+
Pro
TGG
[ENA]
¡û
>W2110541755
JAGGNV010000112
Betaproteobacteria
Variovorax paradoxus ISL-79 [JAGGNV]
290
214
-
Pro
TGG
[ENA]
¡û
>W2110541779
JAGGNW010000011
Betaproteobacteria
Variovorax paradoxus ISL-81 [JAGGNW]
291788
291864
+
Pro
TGG
[ENA]
¡û
>C211132296
CP060295
Betaproteobacteria
Variovorax sp. PAMC26660 [CP060295]
5769095
5769019
-
Pro
TGG
-
¡û
>C211274671
CP070343
Betaproteobacteria
Variovorax sp. PDNC026 [CP070343]
4515277
4515201
-
Pro
TGG
-
¡û
>W2110748912
MOWM01000230
Betaproteobacteria
Variovorax sp. E3 [MOWM]
6142
6218
+
Pro
TGG
[ENA]
¡û
>C231415892
CP099605
Betaproteobacteria
Comamonadaceae bacterium OTU4NAUVB1 [CP099605]
1439372
1439448
+
Pro
TGG
-
¡û
>W2130011237
JAATOM010000026
Betaproteobacteria
Variovorax sp. dw_308 [JAATOM]
22571
22495
-
Pro
TGG
[ENA]
¡û
>C241251447
CP123990
Betaproteobacteria
Variovorax paradoxus MGMM5 [CP123990]
1898522
1898446
-
Pro
TGG
-
¡û
>C241342686
CP138515
Betaproteobacteria
Variovorax paradoxus 2u118 [CP138515]
2440695
2440619
-
Pro
TGG
-
¡û
>W1610072147
BCUS01000021
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
61799
61875
+
Pro
TGG
[ENA]
¡û
>W1610072181
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
208582
208658
+
Pro
TGG
[ENA]
¡û
>W1610685589
LKTU01000016
Betaproteobacteria
Variovorax paradoxus [LKTU]
142883
142959
+
Pro
TGG
[ENA]
¡û
>W1610685760
LKTX01000073
Betaproteobacteria
Variovorax paradoxus [LKTX]
40411
40487
+
Pro
TGG
[ENA]
¡û
>W1610685813
LKTY01000075
Betaproteobacteria
Variovorax paradoxus [LKTY]
40412
40488
+
Pro
TGG
[ENA]
¡û
>W1610685857
LKTZ01000065
Betaproteobacteria
Variovorax paradoxus [LKTZ]
43730
43806
+
Pro
TGG
[ENA]
¡û
>W1710069349
BCUS01000021
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
61799
61875
+
Pro
TGG
[ENA]
¡û
>W1710069383
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
208582
208658
+
Pro
TGG
[ENA]
¡û
>W1710506195
FMUJ01000003
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
734188
734264
+
Pro
TGG
[ENA]
¡û
>W1710517957
FNDR01000007
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
234
158
-
Pro
TGG
[ENA]
¡û
>W1710538141
FNUI01000006
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
9539
9463
-
Pro
TGG
[ENA]
¡û
>W1710539554
FNVM01000006
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
483905
483981
+
Pro
TGG
[ENA]
¡û
>W1710545278
FOBJ01000001
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
747248
747324
+
Pro
TGG
[ENA]
¡û
>W1710554284
FOII01000001
Betaproteobacteria
Variovorax sp. OV084 [FOII]
1302548
1302624
+
Pro
TGG
[ENA]
¡û
>W1710557140
FOKS01000006
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
9489
9413
-
Pro
TGG
[ENA]
¡û
>W1710558151
FOLP01000003
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
6550
6474
-
Pro
TGG
[ENA]
¡û
>W1710571862
FOWG01000002
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
1894
1818
-
Pro
TGG
[ENA]
¡û
>W1710572106
FOWL01000001
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
769007
769083
+
Pro
TGG
[ENA]
¡û
>W1710573292
FOXJ01000001
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
1028813
1028737
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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