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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22112 (23 seq.)
>W131180750
ARNJ01000051
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
71362
71450
+
Ser
GCT
[ENA]
¡û
>W1711377563
MDZA01000328
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
33118
33028
-
Ser
GCT
[ENA]
¡û
>W1711377586
MDZB01000074
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
171566
171476
-
Ser
GCT
[ENA]
¡û
>W1711726891
MTSE01000033
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
11790
11878
+
Ser
GCT
[ENA]
¡û
>WENV170994052
MWWD01004945
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
913
1003
+
Ser
GCT
[ENA]
¢þ
>C181175078
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
577256
577344
+
Ser
GCT
-
¡û
>C191154894
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
2872910
2872822
-
Ser
GCT
-
¡û
>C191183808
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
4971111
4971023
-
Ser
GCT
-
¡û
>W141734738
JNLX01000185
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
30898
30988
+
Ser
GCT
[ENA]
¡û
>W1810089874
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
1679367
1679457
+
Ser
GCT
[ENA]
¡û
>SRA1003484
SRR002326.494663
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
220
132
-
Ser
GCT
[SRA]
>SRA1003982
SRR002328.71442
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
283
193
-
Ser
GCT
[SRA]
>W1810912369
QVLT01000004
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
1790
1878
+
Ser
GCT
[ENA]
¡û
>C151063986
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2042135
2042223
+
Ser
GCT
[Ensembl]
¡û
>C151096223
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1776538
1776450
-
Ser
GCT
-
¡û
>W1511582927
LATM01000001
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
709883
709793
-
Ser
GCT
[ENA]
¡û
>C161061552
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
3195709
3195799
+
Ser
GCT
[Ensembl]
¡û
>C161070716
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
1808688
1808776
+
Ser
GCT
[Ensembl]
¡û
>W1710530544
FNOV01000002
Bacteroidota
Hymenobacter psychrophilus [FNOV]
384578
384490
-
Ser
GCT
[ENA]
¡û
>W1710553575
FOHS01000002
Bacteroidota
Hymenobacter actinosclerus [FOHS]
803392
803304
-
Ser
GCT
[ENA]
¡û
>W1710573718
FOXS01000001
Bacteroidota
Hymenobacter arizonensis [FOXS]
408244
408334
+
Ser
GCT
[ENA]
¡û
>W1710587465
FQYN01000003
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
148195
148107
-
Ser
GCT
[ENA]
¡û
>W1710605430
FWWW01000102
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
4112
4024
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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