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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225069 (126 seq.)
>W1710876629
LMPJ01000012
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
149880
149954
+
Arg
TCG
[ENA]
¡û
>W1711071996
LSHB01000035
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
33995
34069
+
Arg
TCG
[ENA]
¡û
>W1711139044
LVEP01000038
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
253135
253209
+
Arg
TCG
[ENA]
¡û
>W1711206671
LXEI01000013
Bacteroidota
Tamlana agarivorans [LXEI]
136266
136192
-
Arg
TCG
[ENA]
¡û
>W1711284820
LZRN01000039
Bacteroidota
Gelidibacter algens [LZRN]
2721
2647
-
Arg
TCG
[ENA]
¡û
>W1711305193
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
85599
85523
-
Arg
TCG
[ENA]
¡û
>W1711314280
MAUH01000071
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
5211
5287
+
Arg
TCG
[ENA]
¡û
>W1711622853
MPGM01000004
Bacteroidota
Flavobacteriaceae bacterium A100 [MPGM]
174200
174124
-
Arg
TCG
[ENA]
¡û
>W1711689203
MSDT01000002
Bacteroidota
Mangrovimonas sp. DI 80 [MSDT]
249000
248926
-
Arg
TCG
[ENA]
¡û
>C171066053
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
131129
131055
-
Arg
TCG
-
¡û
>W131211409
ATMR01000007
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
100850
100774
-
Arg
TCG
[ENA]
¡û
>W131220960
AUAA01000034
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
959
885
-
Arg
TCG
[ENA]
¡û
>W131237067
AUMU01000016
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
27152
27228
+
Arg
TCG
[ENA]
¡û
>W131237971
AUSH01000087
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
197892
197968
+
Arg
TCG
[ENA]
¡û
>WENV180038825
LLBY010007067
[LLBY] soil metagenome; soil from tomato rhizosphere
51079
51153
+
Arg
TCG
[ENA]
¢þ
>WENV180041726
LLBZ010348143
[LLBZ] soil metagenome; soil from tomato rhizosphere
1425
1351
-
Arg
TCG
[ENA]
¢þ
>WENV180367440
OBOE01090837
[OBOE] marine metagenome; ENVO:00002010
173
247
+
Arg
TCG
[ENA]
¢þ
>WENV180377809
OBON01132588
[OBON] marine metagenome; sea water
259
333
+
Arg
TCG
[ENA]
¢þ
>WENV180395407
OBPT01016524
[OBPT] marine metagenome; ENVO:00002010 seawater
1045
971
-
Arg
TCG
[ENA]
¢þ
>WENV180396502
OBPV01010592
[OBPV] marine metagenome; ENVO:00002010
14
88
+
Arg
TCG
[ENA]
¢þ
>WENV180585653
OCOL01053666
[OCOL] marine metagenome; ENVO:00002010
341
415
+
Arg
TCG
[ENA]
¢þ
>WENV180591516
OCOV01034896
[OCOV] marine metagenome; ENVO:01000301
305
379
+
Arg
TCG
[ENA]
¢þ
>W141079146
ATLG01000025
Bacteroidota
Cellulophaga baltica 4 [ATLG]
172284
172208
-
Arg
TCG
[ENA]
¡û
>W141079220
ATLI01000026
Bacteroidota
Cellulophaga baltica 18 [ATLI]
65576
65500
-
Arg
TCG
[ENA]
¡û
>WENV181196002
OEQV01012373
[OEQV] metagenome; water of meat washing
392
466
+
Arg
TCG
[ENA]
¢þ
>WENV181227881
OFDN01066444
[OFDN] hot springs metagenome; Water
223
149
-
Arg
TCG
[ENA]
¢þ
>WENV181856692
OGWN01009516
[OGWN] freshwater metagenome; freshwater
617
543
-
Arg
TCG
[ENA]
¢þ
>WENV182557481
OJDK01000039
[OJDK] seawater metagenome; Sea water
1534
1460
-
Arg
TCG
[ENA]
¢þ
>WENV182567209
OJEN01014711
[OJEN] seawater metagenome; Sea water
764
838
+
Arg
TCG
[ENA]
¢þ
>WENV182586365
OJHK01000130
[OJHK] seawater metagenome; Sea water
10390
10464
+
Arg
TCG
[ENA]
¢þ
>WENV182587326
OJHM01000457
[OJHM] seawater metagenome; Sea water
1672
1598
-
Arg
TCG
[ENA]
¢þ
>WENV183056678
OLHJ01004305
[OLHJ] seawater metagenome; Sea water
179
253
+
Arg
TCG
[ENA]
¢þ
>WENV183057027
OLHK01000712
[OLHK] seawater metagenome; Sea water
489
563
+
Arg
TCG
[ENA]
¢þ
>WENV183726964
PJTO01000935
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
3964
3890
-
Arg
TCG
[ENA]
¢þ
>WENV183728671
PJTQ01000267
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1903
1829
-
Arg
TCG
[ENA]
¢þ
>WENV183737342
PJUD01004243
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
2121
2047
-
Arg
TCG
[ENA]
¢þ
>WENV183740109
PJUF01000356
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
25239
25165
-
Arg
TCG
[ENA]
¢þ
>WENV170264781
CERD01068944
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
213
137
-
Arg
TCG
[ENA]
¢þ
>WENV170623065
FUWD013134631
[FUWD] metagenome; unknown
654
578
-
Arg
TCG
[ENA]
¢þ
>WENV170623719
FUWD013169823
[FUWD] metagenome; unknown
345
421
+
Arg
TCG
[ENA]
¢þ
>WENV170631299
FUWD013347640
[FUWD] metagenome; unknown
654
578
-
Arg
TCG
[ENA]
¢þ
>WENV170631998
FUWD013377109
[FUWD] metagenome; unknown
345
421
+
Arg
TCG
[ENA]
¢þ
>WENV170639200
JFJP01001474
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2815
2891
+
Arg
TCG
[ENA]
¢þ
>WENV170641799
JFJP01037627
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4212
4136
-
Arg
TCG
[ENA]
¢þ
>WENV170646634
JQIA01000656
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
6971
7047
+
Arg
TCG
[ENA]
¢þ
>WENV170723637
LSQX01276230
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
31799
31725
-
Arg
TCG
[ENA]
¢þ
>WENV170783300
MAAC01015658
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
12211
12287
+
Arg
TCG
[ENA]
¢þ
>WENV170783439
MAAC01016874
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
36884
36960
+
Arg
TCG
[ENA]
¢þ
>WENV170783836
MAAC01019213
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
271091
271015
-
Arg
TCG
[ENA]
¢þ
>C181063576
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
2572980
2572906
-
Arg
TCG
-
¡û
>C181063623
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
2565971
2565897
-
Arg
TCG
-
¡û
>C181122728
CP025791
Bacteroidota
Flavivirga eckloniae ECD14 [CP025791]
1795927
1795853
-
Arg
TCG
-
¡û
>C181123927
CP025938
Bacteroidota
Tamlana carrageenivorans UJ94 [CP025938]
2478170
2478244
+
Arg
TCG
-
¡û
>C191018070
CP020822
Bacteroidota
Tenacibaculum maritimum TM-KORJJ [CP020822]
279880
279954
+
Arg
TCG
-
¡û
>C191023117
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
739540
739466
-
Arg
TCG
-
¡û
>C191115494
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
3668589
3668663
+
Arg
TCG
-
¡û
>C191115554
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
1693745
1693819
+
Arg
TCG
-
¡û
>C191120486
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
1013625
1013551
-
Arg
TCG
-
¡û
>W141809252
JPRI01000007
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
200454
200530
+
Arg
TCG
[ENA]
¡û
>W141816628
JQKA01000006
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
845642
845566
-
Arg
TCG
[ENA]
¡û
>W1910695556
MDVN01000020
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
394344
394270
-
Arg
TCG
[ENA]
¡û
>W1910758267
MLJY01000017
Bacteroidota
Formosa algae KMM 8021 [MLJY]
34807
34733
-
Arg
TCG
[ENA]
¡û
>W1910899208
NGJN01000003
Bacteroidota
Winogradskyella aurantia WNB302 [NGJN]
326368
326294
-
Arg
TCG
[ENA]
¡û
>W1910923765
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
252205
252131
-
Arg
TCG
[ENA]
¡û
>W1910935632
NIXN01000001
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
1075232
1075306
+
Arg
TCG
[ENA]
¡û
>W1911239244
NSDI01000005
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
98156
98230
+
Arg
TCG
[ENA]
¡û
>W1911765431
QXCW01000002
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_72 MAR_2010_72 Mar_2010_72 [QXCW]
618878
618952
+
Arg
TCG
[ENA]
¡û
>W1810161389
PJEO01000054
Bacteroidota
Confluentibacter flavum 3B [PJEO]
80751
80825
+
Arg
TCG
[ENA]
¡û
>W1810223435
POTB01000001
Bacteroidota
Hanstruepera ponticola L53 [POTB]
2325069
2325143
+
Arg
TCG
[ENA]
¡û
>W1810226034
POWF01000001
Bacteroidota
Hanstruepera neustonica JCM19743 [POWF]
832159
832233
+
Arg
TCG
[ENA]
¡û
>W1810260931
PQNY01000010
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
111516
111590
+
Arg
TCG
[ENA]
¡û
>W1810351316
PVEO01000001
Bacteroidota
Jejuia pallidilutea DSM 21165 [PVEO]
97233
97159
-
Arg
TCG
[ENA]
¡û
>W1810679242
QKPO01000006
Bacteroidota
Confluentibacter sediminis DSL-48 [QKPO]
216543
216617
+
Arg
TCG
[ENA]
¡û
>W1810695772
QLST01000002
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
121314
121240
-
Arg
TCG
[ENA]
¡û
>W1810696102
QLSZ01000007
Bacteroidota
Flavobacterium aciduliphilum DSM 25663 [QLSZ]
39901
39975
+
Arg
TCG
[ENA]
¡û
>W1810720961
QNRP01000003
Bacteroidota
Oceanihabitans sediminis DSM 28133 [QNRP]
108862
108936
+
Arg
TCG
[ENA]
¡û
>W1810758180
QPIG01000001
Bacteroidota
Oceanihabitans sediminis S9-10 [QPIG]
1101148
1101222
+
Arg
TCG
[ENA]
¡û
>W1810759630
QPJO01000005
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
198713
198639
-
Arg
TCG
[ENA]
¡û
>W1810787700
QRDX01000001
Bacteroidota
Seonamhaeicola aphaedonensis CECT 8487 [QRDX]
204106
204032
-
Arg
TCG
[ENA]
¡û
>W1810788331
QREI01000001
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
332163
332089
-
Arg
TCG
[ENA]
¡û
>W1810885400
QUNH01000001
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
1395595
1395669
+
Arg
TCG
[ENA]
¡û
>C151018448
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
15061
14985
-
Arg
TCG
[Ensembl]
¡û
>C151061191
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
1958436
1958512
+
Arg
TCG
[Ensembl]
¡û
>C151062866
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
1979825
1979901
+
Arg
TCG
[Ensembl]
¡û
>W1510012893
BBNQ01000006
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
14964
14890
-
Arg
TCG
[ENA]
¡û
>W1510013015
BBNU01000005
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
212599
212673
+
Arg
TCG
[ENA]
¡û
>W1510013065
BBNY01000095
Bacteroidota
Jejuia pallidilutea JCM 19538 [BBNY]
97570
97494
-
Arg
TCG
[ENA]
¡û
>W1510076295
CDOH01000002
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
55818
55742
-
Arg
TCG
[ENA]
¡û
>W1510076366
CDOI01000190
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
9869
9945
+
Arg
TCG
[ENA]
¡û
>W1510076474
CDOL01000250
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
22060
21984
-
Arg
TCG
[ENA]
¡û
>C11104709
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
2538574
2538650
+
Arg
TCG
[Ensembl]
¡û
>W1511222483
JNGS01000020
Bacteroidota
Bizionia psychrotolerans PB-M7 [JNGS]
2284
2208
-
Arg
TCG
[ENA]
¡û
>W1511390859
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
1184020
1183946
-
Arg
TCG
[ENA]
¡û
>W1511398929
JTDW01000019
Bacteroidota
Tamlana sedimentorum JCM 19808 [JTDW]
17759
17685
-
Arg
TCG
[ENA]
¡û
>W1511592715
LBIP01000013
Bacteroidota
Mangrovimonas xylaniphaga ST2L12 [LBIP]
895723
895647
-
Arg
TCG
[ENA]
¡û
>W11169964
AFPB01000177
Bacteroidota
Aquimarina agarivorans HQM9 [AFPB]
42803
42879
+
Arg
TCG
[ENA]
¡û
>C161047097
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
2013622
2013546
-
Arg
TCG
[Ensembl]
¡û
>C161105081
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
3490415
3490341
-
Arg
TCG
[Ensembl]
¡û
>W1610025996
AUYN01000006
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
17306
17230
-
Arg
TCG
[ENA]
¡û
>W1610082046
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2044757
2044681
-
Arg
TCG
[ENA]
¡û
>W121031933
AHHE02000037
Bacteroidota
Aquimarina agarilytica ZC1 [AHHE]
20968
20892
-
Arg
TCG
[ENA]
¡û
>W121110484
ALIH01000008
Bacteroidota
Algibacter luteus P7-3-5 [ALIH]
99082
99006
-
Arg
TCG
[ENA]
¡û
>W1610587465
LDKC01000006
Bacteroidota
Tamlana sp. s12 [LDKC]
201102
201026
-
Arg
TCG
[ENA]
¡û
>W1610738975
LMPJ01000012
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
149880
149954
+
Arg
TCG
[ENA]
¡û
>W1610911256
LSHB01000035
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
33995
34069
+
Arg
TCG
[ENA]
¡û
>W1610950052
LVEP01000038
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
253135
253209
+
Arg
TCG
[ENA]
¡û
>W1610994177
LXEI01000013
Bacteroidota
Tamlana agarivorans [LXEI]
136266
136192
-
Arg
TCG
[ENA]
¡û
>W1611042605
LZRN01000039
Bacteroidota
Gelidibacter algens [LZRN]
2721
2647
-
Arg
TCG
[ENA]
¡û
>W1611054735
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
85599
85523
-
Arg
TCG
[ENA]
¡û
>W1611059155
MAUH01000071
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
5211
5287
+
Arg
TCG
[ENA]
¡û
>WENV080117
AATO01006382
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
317
393
+
Arg
TCG
[ENA]
>W1710022045
AUYN01000006
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
17306
17230
-
Arg
TCG
[ENA]
¡û
>W1710080819
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2044757
2044681
-
Arg
TCG
[ENA]
¡û
>W1710516974
FNCZ01000001
Bacteroidota
Winogradskyella thalassocola [FNCZ]
1393478
1393554
+
Arg
TCG
[ENA]
¡û
>W1710538666
FNUS01000006
Bacteroidota
Halpernia humi [FNUS]
105944
106020
+
Arg
TCG
[ENA]
¡û
>W1710559041
FOMI01000005
Bacteroidota
Algibacter pectinivorans [FOMI]
51247
51323
+
Arg
TCG
[ENA]
¡û
>W1710565930
FORQ01000001
Bacteroidota
Kaistella treverensis treverense [FORQ]
178482
178558
+
Arg
TCG
[ENA]
¡û
>W1710570403
FOVD01000001
Bacteroidota
Chryseobacterium oleae [FOVD]
332920
332844
-
Arg
TCG
[ENA]
¡û
>W1710570952
FOVN01000001
Bacteroidota
Bizionia echini [FOVN]
23779
23703
-
Arg
TCG
[ENA]
¡û
>W1710582611
FQUD01000001
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
1737295
1737371
+
Arg
TCG
[ENA]
¡û
>W1710584562
FQVQ01000007
Bacteroidota
Flavobacterium fontis [FQVQ]
87750
87826
+
Arg
TCG
[ENA]
¡û
>W1710587348
FQYK01000007
Bacteroidota
Algibacter luteus lutea [FQYK]
46435
46511
+
Arg
TCG
[ENA]
¡û
>W1710592006
FRCD01000006
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
195458
195382
-
Arg
TCG
[ENA]
¡û
>W1710603370
FUYZ01000011
Bacteroidota
Soonwooa buanensis [FUYZ]
10005
10081
+
Arg
TCG
[ENA]
¡û
>W1710606138
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
165653
165577
-
Arg
TCG
[ENA]
¡û
>W1710706595
LDKC01000006
Bacteroidota
Tamlana sp. s12 [LDKC]
201102
201026
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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