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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.226192 (107 seq.)
>W1710785311
LJHT01000030
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
23515
23439
-
Pro
GGG
[ENA]
¡û
>W1711386280
MEFD01000019
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
18277
18353
+
Pro
GGG
[ENA]
¡û
>W1711387275
MEGM01000019
Betaproteobacteria
Rubrivivax sp. SCN 70-15 [MEGM]
19542
19466
-
Pro
GGG
[ENA]
¡û
>W1711793365
MWLO01000134
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
36948
37024
+
Pro
GGG
[ENA]
¡û
>W1712102947
NIOF01000001
Betaproteobacteria
Roseateles aquatilis [NIOF]
569182
569106
-
Pro
GGG
[ENA]
¡û
>W1712103039
NIOG01000014
Betaproteobacteria
Roseateles terrae [NIOG]
56486
56410
-
Pro
GGG
[ENA]
¡û
>W1712110613
NJIY01000004
Betaproteobacteria
Achromobacter sp. HZ28 [NJIY]
315051
314975
-
Pro
GGG
[ENA]
¡û
>W131178111
ARLH01000091
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
173451
173527
+
Pro
GGG
[ENA]
¡û
>W131236693
AUMO01000041
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
94690
94614
-
Pro
GGG
[ENA]
¡û
>W131236694
AUMO01000041
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
94337
94261
-
Pro
GGG
[ENA]
¡û
>W131214602
ATUI01000001
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
330058
330134
+
Pro
GGG
[ENA]
¡û
>WENV180019440
FTBV01002378
[FTBV] metagenome; soil
7022
7098
+
Pro
GGG
[ENA]
¢þ
>WENV180097980
MTBK01221228
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1608
1684
+
Pro
GGG
[ENA]
¢þ
>WENV180253518
OBEQ010548917
[OBEQ] groundwater metagenome; groundwater
8
84
+
Pro
GGG
[ENA]
¢þ
>WENV181187920
OEOE01002662
[OEOE] activated sludge metagenome; Activated Sludge
466
542
+
Pro
GGG
[ENA]
¢þ
>WENV181222859
OFDC01000413
[OFDC] hot springs metagenome; Water
24758
24834
+
Pro
GGG
[ENA]
¢þ
>WENV181231477
OFEK01030465
[OFEK] activated sludge metagenome; Anaerobic digester
1276
1200
-
Pro
GGG
[ENA]
¢þ
>WENV181401484
OFTX01000393
[OFTX] sludge metagenome; sludge
17924
18000
+
Pro
GGG
[ENA]
¢þ
>WENV181414275
OGCL01000167
[OGCL] hot springs metagenome; Hot spring water
35933
36009
+
Pro
GGG
[ENA]
¢þ
>WENV181415596
OGCL01016086
[OGCL] hot springs metagenome; Hot spring water
73
-1
-
Pro
GGG
[ENA]
¢þ
>WENV181550098
OGIL01069814
[OGIL] metagenome; Human gut stool
344
418
+
Pro
GGG
[ENA]
¢þ
>W141164521
AXSA02000022
Betaproteobacteria
Bordetella pertussis STO1-CHOC-0016 [AXSA]
100382
100458
+
Pro
GGG
[ENA]
¡û
>W141164586
AXSC02000015
Betaproteobacteria
Bordetella pertussis CHLA-20 [AXSC]
12506
12582
+
Pro
GGG
[ENA]
¡û
>W141165227
AXSP02000024
Betaproteobacteria
Bordetella pertussis STO1-CHLA-0011 [AXSP]
113550
113626
+
Pro
GGG
[ENA]
¡û
>W141169892
AXWS01000012
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
59670
59594
-
Pro
GGG
[ENA]
¡û
>W141170424
AXXZ01000001
Betaproteobacteria
Burkholderia sp. JGI 0001021-N16 [AXXZ]
18571
18495
-
Pro
GGG
[ENA]
¡û
>W141170514
AXYH01000001
Betaproteobacteria
Burkholderia sp. JGI 0001021-N20 [AXYH]
16140
16064
-
Pro
GGG
[ENA]
¡û
>WENV181777024
OGRG01020311
[OGRG] human gut metagenome; faeces
624
700
+
Pro
GGG
[ENA]
¢þ
>WENV181852939
OGWH01011120
[OGWH] freshwater metagenome; freshwater
328
404
+
Pro
GGG
[ENA]
¢þ
>WENV181853673
OGWI01034017
[OGWI] freshwater metagenome; freshwater
207
283
+
Pro
GGG
[ENA]
¢þ
>W141244858
CAKU01000213
Betaproteobacteria
Bordetella bronchiseptica Bbr77 [CAKU]
6104
6180
+
Pro
GGG
[ENA]
¡û
>WENV170551322
CXWJ01004211
[CXWJ] wastewater metagenome; activated sludge
8728
8652
-
Pro
GGG
[ENA]
¢þ
>WENV170559021
CXWL01106552
[CXWL] groundwater metagenome; biofilm material
8543
8619
+
Pro
GGG
[ENA]
¢þ
>WENV170651403
JRYF01011803
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
146
70
-
Pro
GGG
[ENA]
¢þ
>WENV170653583
JRYJ01008890
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
47
123
+
Pro
GGG
[ENA]
¢þ
>C181011617
CP012135
Betaproteobacteria
Bordetella pertussis J014 [CP012135]
1335937
1336013
+
Pro
GGG
-
¡û
>C181024057
CP017160
Betaproteobacteria
Bordetella pertussis J223 [CP017160]
1335866
1335942
+
Pro
GGG
-
¡û
>C181029895
CP018038
Betaproteobacteria
Bordetella pertussis J207 [CP018038]
2779734
2779658
-
Pro
GGG
-
¡û
>C181034291
CP018897
Betaproteobacteria
Bordetella parapertussis [CP018897]
2804116
2804192
+
Pro
GGG
-
¡û
>C181045557
CP020646
Betaproteobacteria
Bordetella parapertussis I440 [CP020646]
1863994
1863918
-
Pro
GGG
-
¡û
>C181045765
CP020650
Betaproteobacteria
Bordetella bronchiseptica E001 [CP020650]
3298768
3298692
-
Pro
GGG
-
¡û
>C181045855
CP020652
Betaproteobacteria
Bordetella parapertussis D577 [CP020652]
2804153
2804229
+
Pro
GGG
-
¡û
>C181064557
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
2559175
2559099
-
Pro
GGG
-
¡û
>C191029736
CP025072
Betaproteobacteria
Bordetella parapertussis B160 [CP025072]
2805758
2805834
+
Pro
GGG
-
¡û
>C191032139
CP025343
Betaproteobacteria
Bordetella pertussis J185 [CP025343]
1333851
1333927
+
Pro
GGG
-
¡û
>C191033289
CP025366
Betaproteobacteria
Bordetella pertussis F954 [CP025366]
1105239
1105315
+
Pro
GGG
-
¡û
>C191033785
CP025376
Betaproteobacteria
Bordetella pertussis I462 [CP025376]
1385861
1385937
+
Pro
GGG
-
¡û
>C191033958
CP025379
Betaproteobacteria
Bordetella pertussis I188 [CP025379]
2689442
2689366
-
Pro
GGG
-
¡û
>C191042386
CP026430
Betaproteobacteria
Bordetella pertussis J364 [CP026430]
2676543
2676467
-
Pro
GGG
-
¡û
>C191043262
CP026448
Betaproteobacteria
Bordetella pertussis J267 [CP026448]
1367067
1367143
+
Pro
GGG
-
¡û
>C191043412
CP026451
Betaproteobacteria
Bordetella pertussis J263 [CP026451]
1367067
1367143
+
Pro
GGG
-
¡û
>C191043662
CP026456
Betaproteobacteria
Bordetella pertussis J257 [CP026456]
1367068
1367144
+
Pro
GGG
-
¡û
>C191045763
CP026627
Betaproteobacteria
Bordetella pertussis J522 [CP026627]
1333854
1333930
+
Pro
GGG
-
¡û
>C191046033
CP026632
Betaproteobacteria
Bordetella pertussis J368 [CP026632]
2692656
2692580
-
Pro
GGG
-
¡û
>C191048757
CP026919
Betaproteobacteria
Bordetella pertussis J130 [CP026919]
2687390
2687314
-
Pro
GGG
-
¡û
>W141521539
JGWR01000026
Betaproteobacteria
Bordetella bronchiseptica CA90 BB1334 [JGWR]
77420
77496
+
Pro
GGG
[ENA]
¡û
>W141521621
JGWS01000081
Betaproteobacteria
Bordetella bronchiseptica CARE970018BB [JGWS]
25190
25114
-
Pro
GGG
[ENA]
¡û
>W141521869
JGWX01000104
Betaproteobacteria
Bordetella bronchiseptica E012 [JGWX]
84034
84110
+
Pro
GGG
[ENA]
¡û
>W141523123
JGXX01000075
Betaproteobacteria
Bordetella bronchiseptica MBORD901 [JGXX]
91441
91365
-
Pro
GGG
[ENA]
¡û
>W141526386
JHBT01000104
Betaproteobacteria
Bordetella bronchiseptica SBL-F6116 [JHBT]
12407
12483
+
Pro
GGG
[ENA]
¡û
>C191182069
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2896928
2896852
-
Pro
GGG
-
¡û
>C191208856
LR134361
Betaproteobacteria
Achromobacter insolitus NCTC13520 [LR134361]
4194549
4194473
-
Pro
GGG
-
¡û
>C191211774
LR134480
Betaproteobacteria
Bordetella bronchiseptica NCTC8344 [LR134480]
2481618
2481542
-
Pro
GGG
-
¡û
>W1910015391
BDOQ01000006
Betaproteobacteria
Novimethylophilus kurashikiensis La2-4 [BDOQ]
68180
68104
-
Pro
GGG
[ENA]
¡û
>W1911701414
QNUI01000002
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
52374
52298
-
Pro
GGG
[ENA]
¡û
>W1911702166
QOAZ01000001
Betaproteobacteria
Azohydromonas sediminis SYSU G00088 [QOAZ]
28726
28650
-
Pro
GGG
[ENA]
¡û
>W1911740731
QUSW01000004
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
286941
286865
-
Pro
GGG
[ENA]
¡û
>W1810081347
PEOG01000017
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
18977
18901
-
Pro
GGG
[ENA]
¡û
>W1810108842
PHGT01000007
Betaproteobacteria
Achromobacter xylosoxidans GAD3 [PHGT]
51411
51487
+
Pro
GGG
[ENA]
¡û
>W1810273280
PSNX01000010
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
239995
240071
+
Pro
GGG
[ENA]
¡û
>W1810576262
QENF01000014
Betaproteobacteria
Achromobacter dolens 4530 [QENF]
104998
104922
-
Pro
GGG
[ENA]
¡û
>W1810624858
QHHO01000049
Betaproteobacteria
Achromobacter sp. RW408 [QHHO]
873244
873168
-
Pro
GGG
[ENA]
¡û
>W1810666657
QJOU01000033
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
10144
10220
+
Pro
GGG
[ENA]
¡û
>W1810762730
QQAP01000001
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
673549
673625
+
Pro
GGG
[ENA]
¡û
>W1810884647
QUMT01000005
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
12453
12377
-
Pro
GGG
[ENA]
¡û
>C151003081
AP014683
Betaproteobacteria
Burkholderiales bacterium GJ-E10 [AP014683]
1241364
1241440
+
Pro
GGG
[Ensembl]
¡û
>C151081695
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
3470077
3470001
-
Pro
GGG
[Ensembl]
¡û
>W1510134062
CFWS01000168
Betaproteobacteria
Bordetella pertussis B057 [CFWS]
5480
5556
+
Pro
GGG
[ENA]
¡û
>W1510135047
CFXM01000146
Betaproteobacteria
Bordetella pertussis B110 [CFXM]
5478
5554
+
Pro
GGG
[ENA]
¡û
>W1510135533
CFXW01000160
Betaproteobacteria
Bordetella pertussis B331 [CFXW]
2541
2465
-
Pro
GGG
[ENA]
¡û
>W1510145011
CGFM01000092
Betaproteobacteria
Bordetella pertussis B090 [CGFM]
5476
5552
+
Pro
GGG
[ENA]
¡û
>W1510147281
CGHF01000153
Betaproteobacteria
Bordetella pertussis B030 [CGHF]
5478
5554
+
Pro
GGG
[ENA]
¡û
>W1510217771
CIJJ01000173
Betaproteobacteria
Bordetella pertussis B079 [CIJJ]
2549
2473
-
Pro
GGG
[ENA]
¡û
>W1510537904
CSNS01000166
Betaproteobacteria
Bordetella pertussis B044 [CSNS]
2531
2455
-
Pro
GGG
[ENA]
¡û
>W1510538499
CSOE01000170
Betaproteobacteria
Bordetella pertussis B076 [CSOE]
5454
5530
+
Pro
GGG
[ENA]
¡û
>W1510540313
CSPQ01000160
Betaproteobacteria
Bordetella pertussis B342 [CSPQ]
5477
5553
+
Pro
GGG
[ENA]
¡û
>W1510541406
CSQN01000133
Betaproteobacteria
Bordetella pertussis B259 [CSQN]
2531
2455
-
Pro
GGG
[ENA]
¡û
>W1510639106
CVJA01000166
Betaproteobacteria
Bordetella pertussis B301 [CVJA]
5459
5535
+
Pro
GGG
[ENA]
¡û
>W1511433127
JUGZ01000003
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
405994
406070
+
Pro
GGG
[ENA]
¡û
>W1511433220
JUHA01000037
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
37337
37413
+
Pro
GGG
[ENA]
¡û
>W11150923
AEWG01000074
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
117304
117228
-
Pro
GGG
[ENA]
¡û
>C121001099
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
2596313
2596389
+
Pro
GGG
[Ensembl]
¡û
>C161060270
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
1656548
1656624
+
Pro
GGG
[Ensembl]
¡û
>W121060079
AJFF01000018
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
8310
8234
-
Pro
GGG
[ENA]
¡û
>W1610070259
BCTC01000089
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
14131
14207
+
Pro
GGG
[ENA]
¡û
>W1610070260
BCTC01000089
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
14545
14621
+
Pro
GGG
[ENA]
¡û
>W1610074121
BCWK01000004
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
192660
192584
-
Pro
GGG
[ENA]
¡û
>W1610076231
BCYP01000006
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
64704
64780
+
Pro
GGG
[ENA]
¡û
>W121036354
AHLZ01000002
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
2744861
2744785
-
Pro
GGG
[ENA]
¡û
>C131019699
HE798385
Betaproteobacteria
Achromobacter xylosoxidans NH44784-1996 [HE798385]
4177463
4177539
+
Pro
GGG
-
¡û
>W1610649117
LJHT01000030
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
23515
23439
-
Pro
GGG
[ENA]
¡û
>W1710067632
BCTC01000089
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
14131
14207
+
Pro
GGG
[ENA]
¡û
>W1710067633
BCTC01000089
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
14545
14621
+
Pro
GGG
[ENA]
¡û
>W1710071239
BCWK01000004
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
192660
192584
-
Pro
GGG
[ENA]
¡û
>W1710074046
BCYP01000006
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
64704
64780
+
Pro
GGG
[ENA]
¡û
>W1710544461
FOAV01000004
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
346014
346090
+
Pro
GGG
[ENA]
¡û
>W1710592650
FRCQ01000005
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
60753
60829
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK