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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229438 (99 seq.)
>WENV180004391
FLRS01001227
[FLRS] metagenome; saliva
1200
1124
-
Arg
CCT
[ENA]
¡û
>WENV180006649
FLRY01187177
[FLRY] metagenome; saliva
104
28
-
Arg
CCT
[ENA]
¡û
>WENV180006865
FLRZ01005316
[FLRZ] metagenome; saliva
4
80
+
Arg
CCT
[ENA]
¡û
>WENV180007063
FLRZ01092886
[FLRZ] metagenome; saliva
167
91
-
Arg
CCT
[ENA]
¡û
>WENV180007816
FLSB01000072
[FLSB] metagenome; saliva
4813
4737
-
Arg
CCT
[ENA]
¡û
>WENV180011279
FLSK01000973
[FLSK] metagenome; saliva
9808
9884
+
Arg
CCT
[ENA]
¡û
>WENV180225772
OBBP01000003
[OBBP] human oral metagenome; human oral
103379
103303
-
Arg
CCT
[ENA]
¡û
>WENV180455764
OBXO01036343
[OBXO] human gut metagenome; faeces
121
45
-
Arg
CCT
[ENA]
¡û
>WENV180698565
ODDH01020301
[ODDH] human metagenome; G_DNA_Buccal mucosa
349
273
-
Arg
CCT
[ENA]
¡û
>WENV180707669
ODFJ01000002
[ODFJ] human metagenome; G_DNA_Tongue dorsum
160954
161030
+
Arg
CCT
[ENA]
¡û
>WENV180717103
ODGA01024769
[ODGA] human metagenome; G_DNA_Buccal mucosa
150
74
-
Arg
CCT
[ENA]
¡û
>WENV180720218
ODGJ01024347
[ODGJ] human metagenome; G_DNA_Tongue dorsum
392
468
+
Arg
CCT
[ENA]
¡û
>WENV180726671
ODGU01000259
[ODGU] human metagenome; G_DNA_Supragingival plaque
15317
15393
+
Arg
CCT
[ENA]
¡û
>WENV180759357
ODHY01008101
[ODHY] human metagenome; G_DNA_Buccal mucosa
220
144
-
Arg
CCT
[ENA]
¡û
>WENV180765068
ODIB01016573
[ODIB] human metagenome; G_DNA_Supragingival plaque
698
622
-
Arg
CCT
[ENA]
¡û
>WENV180779116
ODIN01000565
[ODIN] human metagenome; G_DNA_Throat
7585
7661
+
Arg
CCT
[ENA]
¡û
>WENV180779339
ODIN01002712
[ODIN] human metagenome; G_DNA_Throat
1396
1320
-
Arg
CCT
[ENA]
¡û
>WENV180782855
ODIQ01000275
[ODIQ] human metagenome; G_DNA_Tongue dorsum
26447
26371
-
Arg
CCT
[ENA]
¡û
>WENV180790037
ODIT01002978
[ODIT] human metagenome; G_DNA_Tongue dorsum
2692
2616
-
Arg
CCT
[ENA]
¡û
>WENV180794753
ODIZ01004951
[ODIZ] human metagenome; G_DNA_Tongue dorsum
3193
3117
-
Arg
CCT
[ENA]
¡û
>WENV180803956
ODJG01000202
[ODJG] human metagenome; G_DNA_Supragingival plaque
24666
24590
-
Arg
CCT
[ENA]
¡û
>WENV180807706
ODJI01007429
[ODJI] human metagenome; G_DNA_Tongue dorsum
1729
1653
-
Arg
CCT
[ENA]
¡û
>WENV180808870
ODJK01001506
[ODJK] human metagenome; G_DNA_Subgingival plaque
10540
10464
-
Arg
CCT
[ENA]
¡û
>WENV180824585
ODJX01017198
[ODJX] human metagenome; G_DNA_Supragingival plaque
4
80
+
Arg
CCT
[ENA]
¡û
>WENV180830393
ODKB01002547
[ODKB] human metagenome; G_DNA_Tongue dorsum
2662
2586
-
Arg
CCT
[ENA]
¡û
>WENV180831540
ODKC01000003
[ODKC] human metagenome; G_DNA_Supragingival plaque
317408
317484
+
Arg
CCT
[ENA]
¡û
>WENV180845649
ODKT01001386
[ODKT] human metagenome; G_DNA_Supragingival plaque
5472
5548
+
Arg
CCT
[ENA]
¡û
>WENV180853811
ODKX01000083
[ODKX] human metagenome; G_DNA_Tongue dorsum
33456
33380
-
Arg
CCT
[ENA]
¡û
>WENV180856417
ODKZ01014739
[ODKZ] human metagenome; G_DNA_Tongue dorsum
1729
1653
-
Arg
CCT
[ENA]
¡û
>WENV180857875
ODLC01000120
[ODLC] human metagenome; G_DNA_Tongue dorsum
35532
35608
+
Arg
CCT
[ENA]
¡û
>WENV180860614
ODLE01000001
[ODLE] human metagenome; G_DNA_Tongue dorsum
238965
238889
-
Arg
CCT
[ENA]
¡û
>WENV180866195
ODLJ01006704
[ODLJ] human metagenome; G_DNA_Tongue dorsum
1216
1292
+
Arg
CCT
[ENA]
¡û
>WENV180877810
ODLV01002790
[ODLV] human metagenome; G_DNA_Tongue dorsum
4581
4505
-
Arg
CCT
[ENA]
¡û
>WENV180877830
ODLV01003157
[ODLV] human metagenome; G_DNA_Tongue dorsum
4217
4141
-
Arg
CCT
[ENA]
¡û
>WENV180888098
ODMN01000054
[ODMN] human metagenome; G_DNA_Supragingival plaque
26610
26534
-
Arg
CCT
[ENA]
¡û
>WENV180888155
ODMN01000112
[ODMN] human metagenome; G_DNA_Supragingival plaque
27395
27471
+
Arg
CCT
[ENA]
¡û
>WENV180923630
ODTK01000057
[ODTK] human metagenome; G_DNA_Supragingival plaque
74725
74801
+
Arg
CCT
[ENA]
¡û
>WENV180923655
ODTK01000072
[ODTK] human metagenome; G_DNA_Supragingival plaque
26612
26536
-
Arg
CCT
[ENA]
¡û
>WENV180928820
ODTN01000022
[ODTN] human metagenome; G_DNA_Tongue dorsum
27305
27229
-
Arg
CCT
[ENA]
¡û
>WENV180935207
ODTS01111619
[ODTS] human metagenome; G_DNA_Subgingival plaque
92
168
+
Arg
CCT
[ENA]
¡û
>WENV180938579
ODTX01003687
[ODTX] human metagenome; G_DNA_Supragingival plaque
228
304
+
Arg
CCT
[ENA]
¡û
>WENV180948751
ODUG01003474
[ODUG] human metagenome; G_DNA_Tongue dorsum
4605
4681
+
Arg
CCT
[ENA]
¡û
>WENV180950569
ODUH01000181
[ODUH] human metagenome; G_DNA_Subgingival plaque
8951
9027
+
Arg
CCT
[ENA]
¡û
>WENV180954401
ODUJ01002373
[ODUJ] human metagenome; G_DNA_Tongue dorsum
4616
4540
-
Arg
CCT
[ENA]
¡û
>WENV180954645
ODUJ01005477
[ODUJ] human metagenome; G_DNA_Tongue dorsum
1134
1058
-
Arg
CCT
[ENA]
¡û
>WENV180977268
ODUZ01000172
[ODUZ] human metagenome; G_DNA_Tongue dorsum
4606
4530
-
Arg
CCT
[ENA]
¡û
>WENV180980738
ODVE01001549
[ODVE] human metagenome; G_DNA_Supragingival plaque
7203
7127
-
Arg
CCT
[ENA]
¡û
>WENV180998488
ODVT01000533
[ODVT] human metagenome; G_DNA_Buccal mucosa
27404
27328
-
Arg
CCT
[ENA]
¡û
>WENV181010968
ODWI01001874
[ODWI] human metagenome; G_DNA_Tongue dorsum
1470
1394
-
Arg
CCT
[ENA]
¡û
>WENV181017841
ODWS01042390
[ODWS] human metagenome; G_DNA_Buccal mucosa
129
53
-
Arg
CCT
[ENA]
¡û
>WENV181021434
ODWV01011072
[ODWV] human metagenome; G_DNA_Tongue dorsum
931
855
-
Arg
CCT
[ENA]
¡û
>WENV181044610
ODXV01018148
[ODXV] human metagenome; G_DNA_Tongue dorsum
1465
1541
+
Arg
CCT
[ENA]
¡û
>WENV181045186
ODXW01000019
[ODXW] human metagenome; G_DNA_Tongue dorsum
131397
131473
+
Arg
CCT
[ENA]
¡û
>WENV181052265
ODYE01080216
[ODYE] human metagenome; G_DNA_Tongue dorsum
120
44
-
Arg
CCT
[ENA]
¡û
>WENV181058643
ODYL01022804
[ODYL] human metagenome; G_DNA_Tongue dorsum
60
136
+
Arg
CCT
[ENA]
¡û
>WENV181063289
ODYP01000346
[ODYP] human metagenome; G_DNA_Supragingival plaque
30510
30586
+
Arg
CCT
[ENA]
¡û
>WENV181066720
ODZI01001187
[ODZI] human metagenome; G_DNA_Supragingival plaque
10542
10466
-
Arg
CCT
[ENA]
¡û
>WENV181074645
OEAO01017437
[OEAO] human metagenome; G_DNA_Tongue dorsum
682
758
+
Arg
CCT
[ENA]
¡û
>WENV181084073
OEAV01058865
[OEAV] human metagenome; G_DNA_Supragingival plaque
436
360
-
Arg
CCT
[ENA]
¡û
>WENV181085592
OEAX01022620
[OEAX] human metagenome; G_DNA_Tongue dorsum
150
226
+
Arg
CCT
[ENA]
¡û
>WENV181103729
OECV01002041
[OECV] human metagenome; G_DNA_Throat
1028
952
-
Arg
CCT
[ENA]
¡û
>WENV181124168
OEFQ01018943
[OEFQ] human metagenome; G_DNA_Supragingival plaque
32
108
+
Arg
CCT
[ENA]
¡û
>WENV181129622
OEFX01054168
[OEFX] human metagenome; G_DNA_Tongue dorsum
422
346
-
Arg
CCT
[ENA]
¡û
>WENV181135195
OEGG01005379
[OEGG] human metagenome; G_DNA_Tongue dorsum
1246
1322
+
Arg
CCT
[ENA]
¡û
>WENV181140774
OEGT01000125
[OEGT] human metagenome; G_DNA_Throat
26750
26674
-
Arg
CCT
[ENA]
¡û
>WENV181143216
OEHM01000253
[OEHM] human metagenome; G_DNA_Supragingival plaque
16840
16916
+
Arg
CCT
[ENA]
¡û
>WENV181151099
OEHW01020732
[OEHW] human metagenome; G_DNA_Tongue dorsum
602
678
+
Arg
CCT
[ENA]
¡û
>WENV181157287
OEIG01001559
[OEIG] human metagenome; G_DNA_Hard palate
587
511
-
Arg
CCT
[ENA]
¡û
>WENV181176011
OEJQ01119447
[OEJQ] human metagenome; G_DNA_Tongue dorsum
224
148
-
Arg
CCT
[ENA]
¡û
>WENV181177552
OEJS01004787
[OEJS] human metagenome; G_DNA_Supragingival plaque
3018
2942
-
Arg
CCT
[ENA]
¡û
>WENV181178913
OEJT01000558
[OEJT] human metagenome; G_DNA_Supragingival plaque
22743
22667
-
Arg
CCT
[ENA]
¡û
>WENV181376582
OFQZ01070558
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
335
411
+
Arg
CCT
[ENA]
¡û
>WENV181904714
OGXX01027086
[OGXX] human gut metagenome; faeces
136
60
-
Arg
CCT
[ENA]
¡û
>WENV181919870
OGYI01004436
[OGYI] human gut metagenome; faeces
4468
4392
-
Arg
CCT
[ENA]
¡û
>WENV181953593
OGZI01013401
[OGZI] human gut metagenome; faeces
934
858
-
Arg
CCT
[ENA]
¡û
>WENV181980643
OHAF01082797
[OHAF] human gut metagenome; faeces
225
301
+
Arg
CCT
[ENA]
¡û
>WENV182165045
OHMN01017818
[OHMN] human gut metagenome; faeces
1118
1194
+
Arg
CCT
[ENA]
¡û
>WENV182892077
OKSH01014748
[OKSH] human gut metagenome; faeces
1371
1295
-
Arg
CCT
[ENA]
¡û
>WENV183242113
OLRB01004528
[OLRB] human gut metagenome; faeces
2050
2126
+
Arg
CCT
[ENA]
¡û
>WENV170278391
CERQ01087528
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
273
197
-
Arg
CCT
[ENA]
¡û
>WENV170351122
CETH01127792
[CETH] marine metagenome genome assembly TARA_122_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
167
91
-
Arg
CCT
[ENA]
¡û
>WENV170417287
CEUL01282803
[CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
241
165
-
Arg
CCT
[ENA]
¡û
>WENV170434382
CEUS01257183
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
86
10
-
Arg
CCT
[ENA]
¡û
>WENV170887531
MDTC01241277
[MDTC] marine metagenome; seawater
9436
9360
-
Arg
CCT
[ENA]
¡û
>WENV170888590
MDTC01260295
[MDTC] marine metagenome; seawater
39633
39709
+
Arg
CCT
[ENA]
¡û
>W1930015139
MGCK01000003
Unclassified
Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_01_FULL_45_15 [MGCK]
1006731
1006807
+
Arg
CCT
[ENA]
¡û
>W1930015152
MGCO01000024
Unclassified
Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_02_FULL_46_12 [MGCO]
34655
34579
-
Arg
CCT
[ENA]
¡û
>W1930015163
MGCS01000002
Unclassified
Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_44_22 [MGCS]
36723
36647
-
Arg
CCT
[ENA]
¡û
>W2010362317
CADDWL010000017
Unclassified
Candidatus Saccharibacteria bacterium [CADDWL]
8081
8157
+
Arg
CCT
[ENA]
¡û
>W2011551680
SDRP01000025
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG4 [SDRP]
1324
1400
+
Arg
CCT
[ENA]
¡û
>W2011551779
SDRS01000009
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG1 [SDRS]
29981
30057
+
Arg
CCT
[ENA]
¡û
>W2011552055
SDSB01000002
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG5 [SDSB]
42711
42635
-
Arg
CCT
[ENA]
¡û
>W2110104617
CAJGBL010000163
Unclassified
Candidatus Saccharibacteria bacterium [CAJGBL]
6117
6041
-
Arg
CCT
[ENA]
¡û
>C201082655
CP039997
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM010 [CP039997]
116387
116463
+
Arg
CCT
-
¡û
>C201082739
CP039999
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM001 [CP039999]
111407
111483
+
Arg
CCT
-
¡û
>C201082824
CP040001
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM006 [CP040001]
118933
119009
+
Arg
CCT
-
¡û
>C201209649
CP047917
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 FS15P [CP047917]
114705
114781
+
Arg
CCT
-
¡û
>C201209731
CP047919
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 FS13P [CP047919]
116646
116722
+
Arg
CCT
-
¡û
>C231663669
OX335598
Unclassified
Candidatus Saccharibacteria bacterium [OX335598]
49688
49764
+
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK