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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23442 (74 seq.)
>W1710777836
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
264770
264859
+
Ser
GCT
[ENA]
¡û
>W1710777889
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
240504
240593
+
Ser
GCT
[ENA]
¡û
>W1710915839
LNUO01000017
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
231
320
+
Ser
GCT
[ENA]
¡û
>W1711227879
LXWA01000047
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
1406
1317
-
Ser
GCT
[ENA]
¡û
>W1711303096
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
170943
171032
+
Ser
GCT
[ENA]
¡û
>W1711682909
MRYA01000003
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
309551
309640
+
Ser
GCT
[ENA]
¡û
>W1711682967
MRYB01000011
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
79404
79493
+
Ser
GCT
[ENA]
¡û
>W1711682981
MRYC01000001
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
138130
138041
-
Ser
GCT
[ENA]
¡û
>C171019140
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1795523
1795434
-
Ser
GCT
-
¡û
>C171131052
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
229890
229979
+
Ser
GCT
-
¡û
>C015794
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
194905
194994
+
Ser
GCT
[Ensembl]
¡û
>C015957
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
210869
210958
+
Ser
GCT
[Ensembl]
¡û
>WENV180101410
OAOU01058818
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1
90
+
Ser
GCT
[ENA]
¢þ
>w003200
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
470168
470077
-
Ser
GCT
[ENA]
¡û
>W141086177
AUSW01000025
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
18319
18230
-
Ser
GCT
[ENA]
¡û
>W141195659
AYUI01000026
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
17901
17990
+
Ser
GCT
[ENA]
¡û
>W141199949
AYXM01000039
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
89259
89170
-
Ser
GCT
[ENA]
¡û
>W141199998
AYXN01000024
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
23137
23048
-
Ser
GCT
[ENA]
¡û
>W141200531
AYXZ01000127
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
22704
22793
+
Ser
GCT
[ENA]
¡û
>W141200571
AYYA01000050
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
22945
23034
+
Ser
GCT
[ENA]
¡û
>C08007191
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
194905
194994
+
Ser
GCT
[Ensembl]
¡û
>W141233959
BAWG01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
295429
295518
+
Ser
GCT
[ENA]
¡û
>W141234032
BAWI01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
269321
269410
+
Ser
GCT
[ENA]
¡û
>W141234086
BAWJ01000005
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
135931
135842
-
Ser
GCT
[ENA]
¡û
>WENV182549755
OJBZ01000001
[OJBZ] seawater metagenome; Sea water
302703
302614
-
Ser
GCT
[ENA]
¢þ
>WENV182562254
OJDZ01000265
[OJDZ] seawater metagenome; Sea water
203
114
-
Ser
GCT
[ENA]
¢þ
>WENV182562305
OJDZ01000611
[OJDZ] seawater metagenome; Sea water
5886
5797
-
Ser
GCT
[ENA]
¢þ
>WENV183721850
PDWJ01090790
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
416
327
-
Ser
GCT
[ENA]
¢þ
>WENV170014610
AYSL01000572
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
131
42
-
Ser
GCT
[ENA]
¢þ
>WENV170014655
AYSL01003028
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
125
36
-
Ser
GCT
[ENA]
¢þ
>WENV170242507
CEQO01062271
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
424
335
-
Ser
GCT
[ENA]
¢þ
>WENV170290708
CESA01044178
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
956
867
-
Ser
GCT
[ENA]
¢þ
>WENV170563604
CZCB01022590
[CZCB] anaerobic digester metagenome; anaerobic digester
191
280
+
Ser
GCT
[ENA]
¢þ
>WENV170579420
FUFK010038944
[FUFK] metagenome; unknown
44229
44140
-
Ser
GCT
[ENA]
¢þ
>WENV170587131
FUFK010468980
[FUFK] metagenome; unknown
976
1065
+
Ser
GCT
[ENA]
¢þ
>WENV170590568
FUFK010723583
[FUFK] metagenome; unknown
1297
1208
-
Ser
GCT
[ENA]
¢þ
>WENV170690420
LFRM01340838
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
515
426
-
Ser
GCT
[ENA]
¢þ
>WENV170786436
MDSV01003209
[MDSV] marine metagenome; seawater
16519
16608
+
Ser
GCT
[ENA]
¢þ
>WENV170826673
MDSY01114866
[MDSY] marine metagenome; seawater
4360
4449
+
Ser
GCT
[ENA]
¢þ
>WENV170929792
MDTG01156182
[MDTG] marine metagenome; seawater
287
198
-
Ser
GCT
[ENA]
¢þ
>C181056036
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1974291
1974380
+
Ser
GCT
-
¡û
>W09103320
AAJC01000014
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
62101
62012
-
Ser
GCT
[ENA]
¡û
>C191163855
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2994694
2994605
-
Ser
GCT
-
¡û
>W1910377608
FUKN01000014
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
332992
333081
+
Ser
GCT
[ENA]
¡û
>W1910891624
NEXR01000001
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
292852
292941
+
Ser
GCT
[ENA]
¡û
>W1910891784
NEXU01000090
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
13979
14068
+
Ser
GCT
[ENA]
¡û
>W1911203649
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1457579
1457490
-
Ser
GCT
[ENA]
¡û
>W1911534860
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1387505
1387594
+
Ser
GCT
[ENA]
¡û
>W1810155454
PJAS01000052
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
181992
181903
-
Ser
GCT
[ENA]
¡û
>W1810155506
PJAT01000096
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
8146
8235
+
Ser
GCT
[ENA]
¡û
>W1810156192
PJBD01000053
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
22083
21994
-
Ser
GCT
[ENA]
¡û
>W1810156333
PJBF01000058
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
19729
19818
+
Ser
GCT
[ENA]
¡û
>W1810156427
PJBH01000057
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
69952
69863
-
Ser
GCT
[ENA]
¡û
>W1810157252
PJBU01000081
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
19939
19850
-
Ser
GCT
[ENA]
¡û
>W1810157384
PJBX01000167
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
32937
32848
-
Ser
GCT
[ENA]
¡û
>W1810157422
PJBY01000086
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
23497
23586
+
Ser
GCT
[ENA]
¡û
>W1810596401
QGGM01000007
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
10759
10848
+
Ser
GCT
[ENA]
¡û
>W1810671415
QJSU01000001
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
364626
364537
-
Ser
GCT
[ENA]
¡û
>W1810692673
QLKS01000003
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
323995
323906
-
Ser
GCT
[ENA]
¡û
>C151097223
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1697692
1697781
+
Ser
GCT
-
¡û
>C161042723
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
247544
247633
+
Ser
GCT
-
¡û
>C161042771
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
236705
236794
+
Ser
GCT
[Ensembl]
¡û
>C161079251
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
246820
246909
+
Ser
GCT
[Ensembl]
¡û
>W121043488
AHVZ01000004
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
49769
49680
-
Ser
GCT
[ENA]
¡û
>W1610112408
CZJV02000099
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
22883
22794
-
Ser
GCT
[ENA]
¡û
>C131017367
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
212017
212106
+
Ser
GCT
[Ensembl]
¡û
>W1610632721
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
252012
251923
-
Ser
GCT
[ENA]
¡û
>W1610642022
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
264770
264859
+
Ser
GCT
[ENA]
¡û
>W1610642075
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
240504
240593
+
Ser
GCT
[ENA]
¡û
>W1610774078
LNUO01000017
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
231
320
+
Ser
GCT
[ENA]
¡û
>W1611011843
LXWA01000047
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
1406
1317
-
Ser
GCT
[ENA]
¡û
>W1710115112
CZJV02000099
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
22883
22794
-
Ser
GCT
[ENA]
¡û
>W1710513786
FNAL01000001
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
16530
16619
+
Ser
GCT
[ENA]
¡û
>W1710767153
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
252012
251923
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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