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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235509 (55 seq.)
>W1710852726
LLVZ01000006
Alphaproteobacteria
Candidatus Liberibacter solanacearum [LLVZ]
67266
67191
-
Trp
CCA
[ENA]
¡û
>W1710852734
LLVZ01000021
Alphaproteobacteria
Candidatus Liberibacter solanacearum [LLVZ]
212
137
-
Trp
CCA
[ENA]
¡û
>W1710860920
LMDG01000009
Alphaproteobacteria
Rhizobium sp. Root1220 [LMDG]
16919
16844
-
Trp
CCA
[ENA]
¡û
>W1710862284
LMEG01000033
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
901
976
+
Trp
CCA
[ENA]
¡û
>W1710866876
LMHV01000022
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
18844
18769
-
Trp
CCA
[ENA]
¡û
>W1710936043
LOKY01000005
Alphaproteobacteria
Rhizobium sp. R693 [LOKY]
87147
87222
+
Trp
CCA
[ENA]
¡û
>W1710936090
LOKZ01000003
Alphaproteobacteria
Rhizobium sp. R711 [LOKZ]
88227
88302
+
Trp
CCA
[ENA]
¡û
>W1710936137
LOLA01000003
Alphaproteobacteria
Rhizobium sp. R72 [LOLA]
88227
88302
+
Trp
CCA
[ENA]
¡û
>W1711116186
LUAV01000006
Alphaproteobacteria
Ensifer aridi [LUAV]
2199
2274
+
Trp
CCA
[ENA]
¡û
>W1711213691
LXKO01000001
Alphaproteobacteria
Rhizobium sp. AC44/96 [LXKO]
1099029
1099104
+
Trp
CCA
[ENA]
¡û
>C171020989
CP013107
Alphaproteobacteria
Sinorhizobium americanum CFNEI 73 [CP013107]
1481585
1481660
+
Trp
CCA
-
¡û
>C171057079
CP017101
Alphaproteobacteria
Rhizobium gallicum IE4872 [CP017101]
1640742
1640817
+
Trp
CCA
-
¡û
>C171059062
CP017241
Alphaproteobacteria
Rhizobium etli 8C-3 [CP017241]
1567591
1567666
+
Trp
CCA
-
¡û
>C171115034
CP021024
Alphaproteobacteria
Rhizobium sp. TAL182 [CP021024]
1780276
1780351
+
Trp
CCA
-
¡û
>C171117284
CP021219
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CP021219]
3638936
3638861
-
Trp
CCA
-
¡û
>C171123423
CP021797
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 [CP021797]
200003
199928
-
Trp
CCA
-
¡û
>C171123647
CP021818
Alphaproteobacteria
Sinorhizobium meliloti M162 [CP021818]
1555494
1555569
+
Trp
CCA
-
¡û
>W131214243
ATTQ01000046
Alphaproteobacteria
Rhizobium mongolense USDA 1844 [ATTQ]
17233
17158
-
Trp
CCA
[ENA]
¡û
>W131219940
ATYY01000073
Alphaproteobacteria
Rhizobium mesoamericanum STM 6155 [ATYY]
1532
1607
+
Trp
CCA
[ENA]
¡û
>W131242221
CANI01000010
Alphaproteobacteria
Rhizobium mesoamericanum STM3625 [CANI]
1198
1273
+
Trp
CCA
[ENA]
¡û
>W131214149
ATTO01000089
Alphaproteobacteria
Rhizobium favelukesii OR191 [ATTO]
16871
16796
-
Trp
CCA
[ENA]
¡û
>W141004113
AEYE02000009
Alphaproteobacteria
Rhizobium grahamii CCGE 502 [AEYE]
1189
1264
+
Trp
CCA
[ENA]
¡û
>W141260936
CCAN010000009
Alphaproteobacteria
Agrobacterium tumefaciens [CCAN]
52726
52801
+
Trp
CCA
[ENA]
¡û
>WENV170825893
MDSY01101837
[MDSY] marine metagenome; seawater
4200
4125
-
Trp
CCA
[ENA]
¢þ
>C191173040
CP039910
Alphaproteobacteria
Agrobacterium tumefaciens CFBP6625 [CP039910, CP039911]
1726343
1726268
-
Trp
CCA
-
¡û
>C191173094
CP039916
Alphaproteobacteria
Agrobacterium tumefaciens CFBP6626 [CP039916, CP039917]
1657411
1657336
-
Trp
CCA
-
¡û
>W141560506
JHXQ01000031
Alphaproteobacteria
Allorhizobium undicola ORS 992 = ATCC 700741 [JHXQ]
2194
2269
+
Trp
CCA
[ENA]
¡û
>W141816622
JQJZ01000048
Alphaproteobacteria
Rhizobium sp. OV201 [JQJZ]
12759
12684
-
Trp
CCA
[ENA]
¡û
>W1910199630
FBWE01000012
Alphaproteobacteria
Agrobacterium genomosp. 5 5 str. CFBP 6626 [FBWE]
62013
61938
-
Trp
CCA
[ENA]
¡û
>W1910199764
FBWH01000016
Alphaproteobacteria
Agrobacterium genomosp. 13 13 str. CFBP 6927 [FBWH]
561
486
-
Trp
CCA
[ENA]
¡û
>W1910229432
FNXB01000071
Alphaproteobacteria
Rhizobium tibeticum [FNXB]
1578
1653
+
Trp
CCA
[ENA]
¡û
>C141004087
CP005950
Alphaproteobacteria
Rhizobium etli bv. mimosae str. Mim1 [CP005950]
1708408
1708483
+
Trp
CCA
[Ensembl]
¡û
>W1910840683
NAAC01000007
Alphaproteobacteria
Rhizobium grahamii CCGM3 [NAAC]
132604
132679
+
Trp
CCA
[ENA]
¡û
>W1911189491
NQVN01000070
Alphaproteobacteria
Pleomorphomonas carboxyditropha SVCO-16 [NQVN]
540
615
+
Trp
CCA
[ENA]
¡û
>W1810670826
QJSD01000033
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
1674
1599
-
Trp
CCA
[ENA]
¡û
>C151013855
CP006877
Alphaproteobacteria
Rhizobium gallicum bv. gallicum R602sp [CP006877]
1563219
1563294
+
Trp
CCA
[Ensembl]
¡û
>C151101452
HG916852
Alphaproteobacteria
Rhizobium favelukesii LPU83 [HG916852]
1539035
1539110
+
Trp
CCA
[Ensembl]
¡û
>W1511433877
JUHN01000038
Alphaproteobacteria
Rhizobium sp. CF048 [JUHN]
12720
12645
-
Trp
CCA
[ENA]
¡û
>W121066182
AJQP01000236
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
1299
1374
+
Trp
CCA
[ENA]
¡û
>W121066276
AJQR01000386
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
1251
1326
+
Trp
CCA
[ENA]
¡û
>W121066327
AJQS01000268
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
1340
1415
+
Trp
CCA
[ENA]
¡û
>W121084243
AKHX01000005
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae USDA 2370 [AKHX]
1771641
1771566
-
Trp
CCA
[ENA]
¡û
>W121086552
AKKA01000042
Alphaproteobacteria
Rhizobium sp. CF122 [AKKA]
1248
1323
+
Trp
CCA
[ENA]
¡û
>W1610056633
BBWK01000092
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15812
15737
-
Trp
CCA
[ENA]
¡û
>W1610715865
LLVZ01000006
Alphaproteobacteria
Candidatus Liberibacter solanacearum [LLVZ]
67266
67191
-
Trp
CCA
[ENA]
¡û
>W1610715873
LLVZ01000021
Alphaproteobacteria
Candidatus Liberibacter solanacearum [LLVZ]
212
137
-
Trp
CCA
[ENA]
¡û
>W1610723266
LMDG01000009
Alphaproteobacteria
Rhizobium sp. Root1220 [LMDG]
16919
16844
-
Trp
CCA
[ENA]
¡û
>W1610724630
LMEG01000033
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
901
976
+
Trp
CCA
[ENA]
¡û
>W1610729222
LMHV01000022
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
18844
18769
-
Trp
CCA
[ENA]
¡û
>W1611000695
LXKO01000001
Alphaproteobacteria
Rhizobium sp. AC44/96 [LXKO]
1099029
1099104
+
Trp
CCA
[ENA]
¡û
>W1710053332
BBWK01000092
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15812
15737
-
Trp
CCA
[ENA]
¡û
>W1710505192
FMTM01000025
Alphaproteobacteria
Rhizobium mongolense loessense [FMTM]
1465
1540
+
Trp
CCA
[ENA]
¡û
>W1710547353
FOCV01000059
Alphaproteobacteria
Rhizobium tibeticum [FOCV]
16874
16799
-
Trp
CCA
[ENA]
¡û
>W1710606905
FWYD01000017
Alphaproteobacteria
Primorskyibacter flagellatus [FWYD]
6978
7053
+
Trp
CCA
[ENA]
¡û
>W1710619418
JHUO01000189
Alphaproteobacteria
Rhizobium yanglingense [JHUO]
17218
17143
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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