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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235852 (55 seq.)
>W1710944356
LOQS01000004
Actinomycetota
Corynebacterium glutamicum [LOQS]
56510
56585
+
Arg
CCT
[ENA]
¡û
>W1710944460
LOQT01000029
Actinomycetota
Corynebacterium glutamicum [LOQT]
35940
35865
-
Arg
CCT
[ENA]
¡û
>W1710944537
LOQV01000027
Actinomycetota
Corynebacterium glutamicum [LOQV]
74480
74555
+
Arg
CCT
[ENA]
¡û
>W1710944588
LOQW01000024
Actinomycetota
Corynebacterium glutamicum [LOQW]
35940
35865
-
Arg
CCT
[ENA]
¡û
>W1710944618
LOQX01000017
Actinomycetota
Corynebacterium glutamicum [LOQX]
64027
64102
+
Arg
CCT
[ENA]
¡û
>W1710944675
LOQY01000050
Actinomycetota
Corynebacterium glutamicum [LOQY]
56549
56624
+
Arg
CCT
[ENA]
¡û
>C171074439
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
1013772
1013697
-
Arg
CCT
-
¡û
>C171111090
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
1836783
1836858
+
Arg
CCT
-
¡û
>W131156431
AQPS01000045
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
35875
35800
-
Arg
CCT
[ENA]
¡û
>W131215717
ATVF01000011
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
32738
32665
-
Arg
CCT
[ENA]
¡û
>C005572
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
975284
975209
-
Arg
CCT
[Ensembl]
¡û
>C005712
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
897302
897227
-
Arg
CCT
[Ensembl]
¡û
>C005772
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
898773
898698
-
Arg
CCT
[Ensembl]
¡û
>C005830
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
1061852
1061777
-
Arg
CCT
[Ensembl]
¡û
>W141026583
AKXP01000016
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
35875
35800
-
Arg
CCT
[ENA]
¡û
>WENV180504687
OCAN01032529
[OCAN] human gut metagenome; faeces
236
309
+
Arg
CCT
[ENA]
¢þ
>WENV170721113
LSQX01179493
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7421
7348
-
Arg
CCT
[ENA]
¢þ
>WENV170722225
LSQX01221835
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2986
3059
+
Arg
CCT
[ENA]
¢þ
>C181001639
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
1053894
1053821
-
Arg
CCT
-
¡û
>C181002253
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
1006569
1006496
-
Arg
CCT
-
¡û
>C181029661
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
805250
805177
-
Arg
CCT
-
¡û
>C181064205
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
555574
555501
-
Arg
CCT
-
¡û
>C181070004
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
945829
945756
-
Arg
CCT
-
¡û
>C181118462
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
899034
898961
-
Arg
CCT
-
¡û
>C181118511
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
1678452
1678379
-
Arg
CCT
-
¡û
>C191146764
CP035806
Actinomycetota
Leucobacter triazinivorans JW-1 [CP035806]
2712011
2712084
+
Arg
CCT
-
¡û
>W09127895
ACLI01000073
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
107504
107579
+
Arg
CCT
[ENA]
¡û
>W141800902
JPDH01000058
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
5601
5526
-
Arg
CCT
[ENA]
¡û
>W1910001234
APJJ01000014
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
69022
68949
-
Arg
CCT
[ENA]
¡û
>W1910374157
FUIB01000002
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
36000
35927
-
Arg
CCT
[ENA]
¡û
>C141004177
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
900197
900122
-
Arg
CCT
[Ensembl]
¡û
>W1910438328
FWCI01000016
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
483479
483552
+
Arg
CCT
[ENA]
¡û
>W1910573011
JOLA01000011
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
56410
56483
+
Arg
CCT
[ENA]
¡û
>W1910831777
MWZD01000022
Actinomycetota
Leucobacter massiliensis 122RC15 [MWZD]
170102
170175
+
Arg
CCT
[ENA]
¡û
>C151033032
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
986577
986502
-
Arg
CCT
[Ensembl]
¡û
>C151033089
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
955760
955685
-
Arg
CCT
[Ensembl]
¡û
>C151045711
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
873339
873264
-
Arg
CCT
-
¡û
>C151069928
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
961045
960970
-
Arg
CCT
[Ensembl]
¡û
>C151079639
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
952988
952913
-
Arg
CCT
[Ensembl]
¡û
>W1511500678
JXBH01000012
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
35864
35789
-
Arg
CCT
[ENA]
¡û
>W1511524469
JYEG01000013
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
35889
35814
-
Arg
CCT
[ENA]
¡û
>W11176910
AFYA01000024
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
35846
35771
-
Arg
CCT
[ENA]
¡û
>C161003075
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
1019228
1019153
-
Arg
CCT
-
¡û
>C161003134
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
1017971
1017896
-
Arg
CCT
-
¡û
>C161040478
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
1045706
1045631
-
Arg
CCT
-
¡û
>C161063688
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
1020739
1020664
-
Arg
CCT
[Ensembl]
¡û
>C161081167
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
944233
944158
-
Arg
CCT
-
¡û
>C161089907
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
880454
880379
-
Arg
CCT
[Ensembl]
¡û
>C161096106
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
1004954
1004879
-
Arg
CCT
-
¡û
>W121016280
AGQQ01000031
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
35877
35802
-
Arg
CCT
[ENA]
¡û
>C131012060
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
1098780
1098705
-
Arg
CCT
[Ensembl]
¡û
>C131012120
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
1098779
1098704
-
Arg
CCT
[Ensembl]
¡û
>C131013509
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
867248
867175
-
Arg
CCT
[Ensembl]
¡û
>C131019785
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
897301
897226
-
Arg
CCT
[Ensembl]
¡û
>W1710039853
BAYH01000011
Actinomycetota
Corynebacterium glutamicum [BAYH]
35930
35855
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK