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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235854 (97 seq.)
>W1710944405
LOQS01000034
Actinomycetota
Corynebacterium glutamicum [LOQS]
40617
40692
+
Lys
CTT
[ENA]
¡û
>W1710944406
LOQS01000034
Actinomycetota
Corynebacterium glutamicum [LOQS]
40780
40853
+
Lys
CTT
[ENA]
¡û
>W1710944450
LOQT01000024
Actinomycetota
Corynebacterium glutamicum [LOQT]
247190
247265
+
Lys
CTT
[ENA]
¡û
>W1710944451
LOQT01000024
Actinomycetota
Corynebacterium glutamicum [LOQT]
247353
247426
+
Lys
CTT
[ENA]
¡û
>W1710944509
LOQV01000020
Actinomycetota
Corynebacterium glutamicum [LOQV]
268995
269070
+
Lys
CTT
[ENA]
¡û
>W1710944510
LOQV01000020
Actinomycetota
Corynebacterium glutamicum [LOQV]
269158
269231
+
Lys
CTT
[ENA]
¡û
>W1710944584
LOQW01000023
Actinomycetota
Corynebacterium glutamicum [LOQW]
249065
249140
+
Lys
CTT
[ENA]
¡û
>W1710944585
LOQW01000023
Actinomycetota
Corynebacterium glutamicum [LOQW]
249228
249301
+
Lys
CTT
[ENA]
¡û
>W1710944645
LOQX01000035
Actinomycetota
Corynebacterium glutamicum [LOQX]
10003
9928
-
Lys
CTT
[ENA]
¡û
>W1710944646
LOQX01000035
Actinomycetota
Corynebacterium glutamicum [LOQX]
9840
9767
-
Lys
CTT
[ENA]
¡û
>W1710944681
LOQY01000071
Actinomycetota
Corynebacterium glutamicum [LOQY]
41941
42016
+
Lys
CTT
[ENA]
¡û
>W1710944682
LOQY01000071
Actinomycetota
Corynebacterium glutamicum [LOQY]
42104
42177
+
Lys
CTT
[ENA]
¡û
>C171074410
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
2561917
2561992
+
Lys
CTT
-
¡û
>C171074411
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
2562080
2562153
+
Lys
CTT
-
¡û
>C171111126
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
141422
141347
-
Lys
CTT
-
¡û
>C171111127
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
141259
141186
-
Lys
CTT
-
¡û
>W131156427
AQPS01000045
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
360526
360601
+
Lys
CTT
[ENA]
¡û
>W131156428
AQPS01000045
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
360689
360762
+
Lys
CTT
[ENA]
¡û
>W131215723
ATVF01000014
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
66265
66190
-
Lys
CTT
[ENA]
¡û
>C005546
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
2524659
2524731
+
Lys
CTT
[Ensembl]
¡û
>C005547
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
2524825
2524900
+
Lys
CTT
[Ensembl]
¡û
>C005687
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
2622649
2622724
+
Lys
CTT
[Ensembl]
¡û
>C005688
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
2622812
2622884
+
Lys
CTT
[Ensembl]
¡û
>C005747
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
2594322
2594397
+
Lys
CTT
[Ensembl]
¡û
>C005748
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
2594485
2594557
+
Lys
CTT
[Ensembl]
¡û
>C005807
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
2623362
2623437
+
Lys
CTT
[Ensembl]
¡û
>C005808
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
2623525
2623597
+
Lys
CTT
[Ensembl]
¡û
>W141026609
AKXP01000027
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
249899
249974
+
Lys
CTT
[ENA]
¡û
>W141026610
AKXP01000027
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
250062
250135
+
Lys
CTT
[ENA]
¡û
>WENV180504574
OCAN01008496
[OCAN] human gut metagenome; faeces
945
1020
+
Lys
CTT
[ENA]
¢þ
>WENV170685555
LFRM01097963
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
460
385
-
Lys
CTT
[ENA]
¢þ
>C181001614
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
2780144
2780219
+
Lys
CTT
-
¡û
>C181001615
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
2780307
2780380
+
Lys
CTT
-
¡û
>C181002228
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
2542871
2542946
+
Lys
CTT
-
¡û
>C181002229
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
2543034
2543107
+
Lys
CTT
-
¡û
>C181029636
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
2174261
2174336
+
Lys
CTT
-
¡û
>C181029637
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
2174424
2174497
+
Lys
CTT
-
¡û
>C181064166
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
2094887
2094962
+
Lys
CTT
-
¡û
>C181064167
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
2095050
2095123
+
Lys
CTT
-
¡û
>C181069975
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
2567499
2567574
+
Lys
CTT
-
¡û
>C181069976
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
2567662
2567735
+
Lys
CTT
-
¡û
>C181118437
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
2629871
2629946
+
Lys
CTT
-
¡û
>C181118438
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
2630034
2630107
+
Lys
CTT
-
¡û
>C181118467
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
94407
94482
+
Lys
CTT
-
¡û
>C181118468
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
94570
94643
+
Lys
CTT
-
¡û
>W09127911
ACLI01000099
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
88480
88553
+
Lys
CTT
[ENA]
¡û
>W09127912
ACLI01000099
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
88646
88721
+
Lys
CTT
[ENA]
¡û
>W1910001250
APJJ01000023
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
176307
176382
+
Lys
CTT
[ENA]
¡û
>W1910001251
APJJ01000023
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
176470
176543
+
Lys
CTT
[ENA]
¡û
>W1910374191
FUIB01000019
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
13433
13358
-
Lys
CTT
[ENA]
¡û
>W1910374192
FUIB01000019
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
13270
13197
-
Lys
CTT
[ENA]
¡û
>C141004152
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
2390862
2390937
+
Lys
CTT
[Ensembl]
¡û
>C141004153
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
2391025
2391098
+
Lys
CTT
[Ensembl]
¡û
>W1910438314
FWCI01000014
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
313077
313004
-
Lys
CTT
[ENA]
¡û
>W1910573019
JOLA01000016
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
1444
1369
-
Lys
CTT
[ENA]
¡û
>W1910573020
JOLA01000016
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
1281
1208
-
Lys
CTT
[ENA]
¡û
>C151033007
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
2501981
2502056
+
Lys
CTT
[Ensembl]
¡û
>C151033008
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
2502144
2502217
+
Lys
CTT
[Ensembl]
¡û
>C151033067
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
2470721
2470796
+
Lys
CTT
[Ensembl]
¡û
>C151033068
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
2470884
2470957
+
Lys
CTT
[Ensembl]
¡û
>C151034717
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
2100072
2100147
+
Lys
CTT
[Ensembl]
¡û
>C151069903
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
2487899
2487974
+
Lys
CTT
[Ensembl]
¡û
>C151069904
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
2488062
2488135
+
Lys
CTT
[Ensembl]
¡û
>C151079610
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
2576282
2576357
+
Lys
CTT
[Ensembl]
¡û
>C151079611
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
2576445
2576518
+
Lys
CTT
[Ensembl]
¡û
>W1511500707
JXBH01000027
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
41657
41732
+
Lys
CTT
[ENA]
¡û
>W1511500708
JXBH01000027
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
41820
41893
+
Lys
CTT
[ENA]
¡û
>W1511524481
JYEG01000023
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
41677
41752
+
Lys
CTT
[ENA]
¡û
>W1511524482
JYEG01000023
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
41840
41913
+
Lys
CTT
[ENA]
¡û
>W11176889
AFYA01000011
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
13077
13002
-
Lys
CTT
[ENA]
¡û
>W11176890
AFYA01000011
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
12914
12841
-
Lys
CTT
[ENA]
¡û
>C161003050
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
2580522
2580597
+
Lys
CTT
-
¡û
>C161003051
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
2580685
2580758
+
Lys
CTT
-
¡û
>C161003109
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
2572023
2572098
+
Lys
CTT
-
¡û
>C161003110
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
2572186
2572259
+
Lys
CTT
-
¡û
>C161040453
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
2587151
2587226
+
Lys
CTT
-
¡û
>C161040454
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
2587314
2587387
+
Lys
CTT
-
¡û
>C161063662
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
2537445
2537520
+
Lys
CTT
[Ensembl]
¡û
>C161063663
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
2537608
2537681
+
Lys
CTT
[Ensembl]
¡û
>C161081138
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
2570433
2570508
+
Lys
CTT
-
¡û
>C161081139
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
2570596
2570669
+
Lys
CTT
-
¡û
>C161089883
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
2386070
2386145
+
Lys
CTT
[Ensembl]
¡û
>C161089884
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
2386234
2386307
+
Lys
CTT
[Ensembl]
¡û
>C161096081
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
2542874
2542949
+
Lys
CTT
-
¡û
>C161096082
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
2543037
2543110
+
Lys
CTT
-
¡û
>W121016261
AGQQ01000018
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
10739
10664
-
Lys
CTT
[ENA]
¡û
>W121016262
AGQQ01000018
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
10576
10503
-
Lys
CTT
[ENA]
¡û
>C131012035
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
2638332
2638407
+
Lys
CTT
[Ensembl]
¡û
>C131012036
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
2638495
2638568
+
Lys
CTT
[Ensembl]
¡û
>C131012095
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
2638331
2638406
+
Lys
CTT
[Ensembl]
¡û
>C131012096
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
2638494
2638567
+
Lys
CTT
[Ensembl]
¡û
>C131013483
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
2244692
2244765
+
Lys
CTT
[Ensembl]
¡û
>C131013484
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
2244856
2244931
+
Lys
CTT
[Ensembl]
¡û
>C131019760
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
2622648
2622723
+
Lys
CTT
[Ensembl]
¡û
>C131019761
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
2622811
2622884
+
Lys
CTT
[Ensembl]
¡û
>W1710039881
BAYH01000031
Actinomycetota
Corynebacterium glutamicum [BAYH]
31840
31915
+
Lys
CTT
[ENA]
¡û
>W1710039882
BAYH01000031
Actinomycetota
Corynebacterium glutamicum [BAYH]
32003
32076
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK