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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235858 (123 seq.)
>W1710944389
LOQS01000019
Actinomycetota
Corynebacterium glutamicum [LOQS]
66153
66228
+
Thr
CGT
[ENA]
¡û
>W1710944435
LOQT01000014
Actinomycetota
Corynebacterium glutamicum [LOQT]
10017
9942
-
Thr
CGT
[ENA]
¡û
>W1710944524
LOQV01000022
Actinomycetota
Corynebacterium glutamicum [LOQV]
170612
170537
-
Thr
CGT
[ENA]
¡û
>W1710944571
LOQW01000016
Actinomycetota
Corynebacterium glutamicum [LOQW]
10017
9942
-
Thr
CGT
[ENA]
¡û
>W1710944661
LOQX01000056
Actinomycetota
Corynebacterium glutamicum [LOQX]
62449
62374
-
Thr
CGT
[ENA]
¡û
>W1710944686
LOQY01000083
Actinomycetota
Corynebacterium glutamicum [LOQY]
2942
2867
-
Thr
CGT
[ENA]
¡û
>W1711092377
LTEB01000010
Actinomycetota
Corynebacterium simulans [LTEB]
36958
37033
+
Thr
CGT
[ENA]
¡û
>W1711093757
LTFH01000027
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
25943
26018
+
Thr
CGT
[ENA]
¡û
>W1711094458
LTFX01000101
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
94113
94188
+
Thr
CGT
[ENA]
¡û
>W1711095115
LTGN01000027
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
9128
9201
+
Thr
CGT
[ENA]
¡û
>W1711096790
LTIB01000037
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
16744
16819
+
Thr
CGT
[ENA]
¡û
>W1711097002
LTIG01000044
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
51899
51826
-
Thr
CGT
[ENA]
¡û
>W1711097268
LTIM01000103
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
1233
1158
-
Thr
CGT
[ENA]
¡û
>W1711099774
LTKT01000035
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
36035
35960
-
Thr
CGT
[ENA]
¡û
>W1711106212
LTRQ01000009
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
1229
1154
-
Thr
CGT
[ENA]
¡û
>W1711106887
LTSH01000011
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
42182
42107
-
Thr
CGT
[ENA]
¡û
>W1711108560
LTTW01000024
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
16366
16441
+
Thr
CGT
[ENA]
¡û
>W1711108691
LTTZ01000004
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
1232
1157
-
Thr
CGT
[ENA]
¡û
>W1711109289
LTUN01000034
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
26166
26241
+
Thr
CGT
[ENA]
¡û
>W1711109471
LTUR01000073
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
1234
1159
-
Thr
CGT
[ENA]
¡û
>W1711111634
LTWQ01000046
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
26070
26145
+
Thr
CGT
[ENA]
¡û
>W1711112384
LTXJ01000029
Actinomycetota
Corynebacterium sp. HMSC077D03 [LTXJ]
66681
66606
-
Thr
CGT
[ENA]
¡û
>W1711112766
LTXS01000007
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
26205
26278
+
Thr
CGT
[ENA]
¡û
>W1711186269
LWOC01000002
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
49520
49445
-
Thr
CGT
[ENA]
¡û
>W1711188296
LWQH01000082
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
211
136
-
Thr
CGT
[ENA]
¡û
>C171074389
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
378827
378902
+
Thr
CGT
-
¡û
>C171111105
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
2406100
2406025
-
Thr
CGT
-
¡û
>C171117442
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
2631241
2631166
-
Thr
CGT
-
¡û
>W131165352
ARBM01000004
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
235455
235530
+
Thr
CGT
[ENA]
¡û
>W131156390
AQPS01000018
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
71267
71342
+
Thr
CGT
[ENA]
¡û
>W131215711
ATVF01000008
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
35575
35500
-
Thr
CGT
[ENA]
¡û
>C005666
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
329629
329704
+
Thr
CGT
[Ensembl]
¡û
>C005726
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
329630
329705
+
Thr
CGT
[Ensembl]
¡û
>C005786
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
434770
434845
+
Thr
CGT
[Ensembl]
¡û
>W141026574
AKXP01000008
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
71267
71342
+
Thr
CGT
[ENA]
¡û
>WENV180504527
OCAN01005400
[OCAN] human gut metagenome; faeces
2232
2305
+
Thr
CGT
[ENA]
¢þ
>WENV180773553
ODIJ01000552
[ODIJ] human metagenome; G_DNA_Tongue dorsum
534
607
+
Thr
CGT
[ENA]
¢þ
>WENV182641124
OJLE01009358
[OJLE] metagenome; surface
978
903
-
Thr
CGT
[ENA]
¢þ
>WENV182641912
OJLL01000003
[OJLL] metagenome; surface
37818
37893
+
Thr
CGT
[ENA]
¢þ
>WENV182642995
OJLS01000054
[OJLS] metagenome; surface
14849
14924
+
Thr
CGT
[ENA]
¢þ
>WENV182645004
OJLY01001401
[OJLY] metagenome; surface
4766
4841
+
Thr
CGT
[ENA]
¢þ
>WENV182645728
OJLZ01001336
[OJLZ] metagenome; surface
2868
2793
-
Thr
CGT
[ENA]
¢þ
>WENV182646836
OJMD01062121
[OJMD] metagenome; surface
387
460
+
Thr
CGT
[ENA]
¢þ
>WENV183511409
OMJG01000219
[OMJG] food metagenome; Cotija cheese
11751
11824
+
Thr
CGT
[ENA]
¢þ
>WENV170687717
LFRM01207372
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
348
423
+
Thr
CGT
[ENA]
¢þ
>C181001593
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
471488
471563
+
Thr
CGT
-
¡û
>C181002207
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
379160
379235
+
Thr
CGT
-
¡û
>C181029616
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
327969
328044
+
Thr
CGT
-
¡û
>C181064180
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
3226109
3226184
+
Thr
CGT
-
¡û
>C181069954
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
375720
375793
+
Thr
CGT
-
¡û
>C181109983
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
568932
569007
+
Thr
CGT
-
¡û
>C181118417
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
331361
331436
+
Thr
CGT
-
¡û
>C181118481
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
1110782
1110857
+
Thr
CGT
-
¡û
>C181144741
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
208788
208863
+
Thr
CGT
-
¡û
>C181211251
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
658732
658807
+
Thr
CGT
-
¡û
>C191111885
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
334251
334324
+
Thr
CGT
-
¡û
>C191114619
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
2079550
2079475
-
Thr
CGT
-
¡û
>C191114664
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
2153923
2153848
-
Thr
CGT
-
¡û
>W141800898
JPDH01000025
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
9995
9920
-
Thr
CGT
[ENA]
¡û
>W1910001224
APJJ01000003
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
18956
19031
+
Thr
CGT
[ENA]
¡û
>W1910339909
FTLL01000016
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
254748
254823
+
Thr
CGT
[ENA]
¡û
>W1910374184
FUIB01000016
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
230021
230096
+
Thr
CGT
[ENA]
¡û
>C141004132
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
329607
329682
+
Thr
CGT
[Ensembl]
¡û
>C141004775
CP006365
Actinomycetota
Corynebacterium argentoratense DSM 44202 [CP006365]
154130
154203
+
Thr
CGT
[Ensembl]
¡û
>W1910438302
FWCI01000014
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
33227
33302
+
Thr
CGT
[ENA]
¡û
>W1910572999
JOLA01000002
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
73765
73840
+
Thr
CGT
[ENA]
¡û
>C09102726
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
257532
257607
+
Thr
CGT
[Ensembl]
¡û
>W1911390897
NWBP01000038
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
36351
36426
+
Thr
CGT
[ENA]
¡û
>W1911621504
PQNF01000069
Actinomycetota
Corynebacterium bovis WCM4 [PQNF]
10780
10855
+
Thr
CGT
[ENA]
¡û
>W1911621554
PQNG01000100
Actinomycetota
Corynebacterium bovis WCM3 - SMALL [PQNG]
6074
5999
-
Thr
CGT
[ENA]
¡û
>W1911621592
PQNH01000022
Actinomycetota
Corynebacterium bovis WCM3 - LARGE [PQNH]
6065
5990
-
Thr
CGT
[ENA]
¡û
>W1911621641
PQNI01000020
Actinomycetota
Corynebacterium bovis WCM1 [PQNI]
15516
15591
+
Thr
CGT
[ENA]
¡û
>W1911621708
PQNJ01000075
Actinomycetota
Corynebacterium bovis MI 82-1021 [PQNJ]
1488
1563
+
Thr
CGT
[ENA]
¡û
>W1911621791
PQNL01000017
Actinomycetota
Corynebacterium bovis CUAMC1 - SMALL [PQNL]
13552
13477
-
Thr
CGT
[ENA]
¡û
>W1911621836
PQNM01000067
Actinomycetota
Corynebacterium bovis CUAMC1 - LARGE [PQNM]
6310
6235
-
Thr
CGT
[ENA]
¡û
>W1911621904
PQNN01000022
Actinomycetota
Corynebacterium bovis 17-0240 - SMALL [PQNN]
12914
12839
-
Thr
CGT
[ENA]
¡û
>W1911621983
PQNP01000004
Actinomycetota
Corynebacterium bovis 16-3465 [PQNP]
145887
145812
-
Thr
CGT
[ENA]
¡û
>W1911622046
PQNQ01000013
Actinomycetota
Corynebacterium bovis 16-2004 [PQNQ]
27426
27501
+
Thr
CGT
[ENA]
¡û
>W1911622105
PQNR01000091
Actinomycetota
Corynebacterium bovis 16-1683 - SMALL [PQNR]
1486
1561
+
Thr
CGT
[ENA]
¡û
>W1911622155
PQNS01000119
Actinomycetota
Corynebacterium bovis 16-1683 - LARGE [PQNS]
1467
1542
+
Thr
CGT
[ENA]
¡û
>W1911622176
PQNT01000001
Actinomycetota
Corynebacterium bovis 13-1426 [PQNT]
145771
145696
-
Thr
CGT
[ENA]
¡û
>W1911622248
PQNU01000008
Actinomycetota
Corynebacterium bovis 12-5346 [PQNU]
77202
77127
-
Thr
CGT
[ENA]
¡û
>W1911622282
PQNV01000057
Actinomycetota
Corynebacterium bovis 7894 [PQNV]
1431
1506
+
Thr
CGT
[ENA]
¡û
>W1911622347
PQNW01000004
Actinomycetota
Corynebacterium bovis 4828 [PQNW]
130184
130109
-
Thr
CGT
[ENA]
¡û
>W1810568960
QEEZ01000016
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
3656
3581
-
Thr
CGT
[ENA]
¡û
>C151007253
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
243173
243248
+
Thr
CGT
[Ensembl]
¡û
>C151032986
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
362456
362531
+
Thr
CGT
[Ensembl]
¡û
>C151033046
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
362462
362537
+
Thr
CGT
[Ensembl]
¡û
>C151045665
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
336673
336748
+
Thr
CGT
-
¡û
>C151069882
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
348188
348263
+
Thr
CGT
[Ensembl]
¡û
>C151079589
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
375723
375798
+
Thr
CGT
[Ensembl]
¡û
>C151079695
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
208809
208884
+
Thr
CGT
[Ensembl]
¡û
>W1511356316
JRUB01000006
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
192363
192288
-
Thr
CGT
[ENA]
¡û
>W1511365537
JSEF01000005
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
33297
33372
+
Thr
CGT
[ENA]
¡û
>W1511451291
JVCW01000071
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
1318
1243
-
Thr
CGT
[ENA]
¡û
>W1511500667
JXBH01000003
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
177550
177625
+
Thr
CGT
[ENA]
¡û
>W1511524451
JYEG01000004
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
10642
10567
-
Thr
CGT
[ENA]
¡û
>W11141094
AENJ01000210
Actinomycetota
Corynebacterium bovis DSM 20582 [AENJ]
1279
1204
-
Thr
CGT
[ENA]
¡û
>W1511542013
JZEZ01000005
Actinomycetota
Corynebacterium argentoratense CNM 463/05 [JZEZ]
34109
34182
+
Thr
CGT
[ENA]
¡û
>W1511542064
JZFA01000006
Actinomycetota
Corynebacterium argentoratense CNM 601/08 [JZFA]
54000
54073
+
Thr
CGT
[ENA]
¡û
>W1511585512
LAYQ01000010
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
160022
159947
-
Thr
CGT
[ENA]
¡û
>W1511644858
LDYE01000002
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
47558
47633
+
Thr
CGT
[ENA]
¡û
>W11176879
AFYA01000008
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
107188
107263
+
Thr
CGT
[ENA]
¡û
>C161003030
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
381593
381668
+
Thr
CGT
-
¡û
>C161003089
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
381624
381699
+
Thr
CGT
-
¡û
>C161040433
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
414883
414958
+
Thr
CGT
-
¡û
>C161063642
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
396076
396151
+
Thr
CGT
[Ensembl]
¡û
>C161074810
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
1146437
1146362
-
Thr
CGT
[Ensembl]
¡û
>C161081117
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
374112
374187
+
Thr
CGT
-
¡û
>C161096060
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
377544
377619
+
Thr
CGT
-
¡û
>W121016295
AGQQ01000036
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
62396
62321
-
Thr
CGT
[ENA]
¡û
>W1610069815
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
20345
20270
-
Thr
CGT
[ENA]
¡û
>W1610419434
FIZC01000015
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
50346
50271
-
Thr
CGT
[ENA]
¡û
>C131005340
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
2356896
2356821
-
Thr
CGT
[Ensembl]
¡û
>C131012014
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
420148
420223
+
Thr
CGT
[Ensembl]
¡û
>C131012074
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
420149
420224
+
Thr
CGT
[Ensembl]
¡û
>C131013462
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
304301
304376
+
Thr
CGT
[Ensembl]
¡û
>C131019739
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
329629
329704
+
Thr
CGT
[Ensembl]
¡û
>W1610926415
LTEB01000010
Actinomycetota
Corynebacterium simulans [LTEB]
36958
37033
+
Thr
CGT
[ENA]
¡û
>W1710039843
BAYH01000008
Actinomycetota
Corynebacterium glutamicum [BAYH]
145832
145907
+
Thr
CGT
[ENA]
¡û
>W1710067188
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
20345
20270
-
Thr
CGT
[ENA]
¡û
>W1710419170
FIZC01000015
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
50346
50271
-
Thr
CGT
[ENA]
¡û
>W1710608164
FXAR01000002
Actinomycetota
Corynebacterium pollutisoli [FXAR]
34986
34911
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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