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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236046 (85 seq.)
>W1710876301
LMPC01000019
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
18343
18419
+
Thr
TGT
[ENA]
¡û
>W1710880027
LMSB01000013
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
26472
26548
+
Thr
TGT
[ENA]
¡û
>W1710880389
LMSH01000007
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
51162
51086
-
Thr
TGT
[ENA]
¡û
>W1711724066
MTPV01000028
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
113261
113187
-
Thr
TGT
[ENA]
¡û
>W1711768835
MVDG01000071
Actinomycetota
Arthrobacter sp. KBS0703 [MVDG]
11228
11152
-
Thr
TGT
[ENA]
¡û
>W1712049469
NFSC01000017
Actinomycetota
Arthrobacter agilis [NFSC]
10108
10032
-
Thr
TGT
[ENA]
¡û
>W131089952
AOFD01000062
Actinomycetota
Arthrobacter nitrophenolicus SJCon [AOFD]
12083
12159
+
Thr
TGT
[ENA]
¡û
>C000051
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
992133
992209
+
Thr
TGT
[Ensembl]
¡û
>WENV180018447
FSZH01000239
[FSZH] metagenome; soil
1125
1199
+
Thr
TGT
[ENA]
¡û
>WENV180019660
FTCF01000427
[FTCF] metagenome; soil
105
179
+
Thr
TGT
[ENA]
¡û
>WENV180023988
FTIF01006139
[FTIF] metagenome; soil
12852
12926
+
Thr
TGT
[ENA]
¡û
>WENV181171567
OEIV010270359
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
327
252
-
Thr
TGT
[ENA]
¡û
>WENV181191274
OEPS010048897
[OEPS] soil metagenome; soil
132
208
+
Thr
TGT
[ENA]
¡û
>W08008068
ABKU01000050
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
12595
12522
-
Thr
TGT
[ENA]
¡û
>WENV183728950
PJTQ01001396
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
5803
5727
-
Thr
TGT
[ENA]
¡û
>WENV170700537
LIDZ01015126
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
2265
2341
+
Thr
TGT
[ENA]
¡û
>C191174043
CP040018
Actinomycetota
Arthrobacter sp. 24S4-2 [CP040018]
888553
888628
+
Thr
TGT
-
¡û
>C191193408
LR131272
Actinomycetota
Arthrobacter agilis NCTC2676_1 [LR131272]
505715
505791
+
Thr
TGT
-
¡û
>W141702024
JMLE01000013
Actinomycetota
Arthrobacter sp. UNC362MFTsu5.1 [JMLE]
122624
122548
-
Thr
TGT
[ENA]
¡û
>W1911497869
OCST01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
348022
347946
-
Thr
TGT
[ENA]
¡û
>W1810167262
PJII01000011
Actinomycetota
Arthrobacter sp. ZGTC412 [PJII]
11634
11709
+
Thr
TGT
[ENA]
¡û
>W1810167371
PJIK01000027
Actinomycetota
Arthrobacter sp. ZGTC131 [PJIK]
12235
12311
+
Thr
TGT
[ENA]
¡û
>W1810167461
PJIM01000003
Actinomycetota
Arthrobacter sp. SX1312 [PJIM]
676460
676384
-
Thr
TGT
[ENA]
¡û
>W1810167623
PJIQ01000003
Actinomycetota
Arthrobacter sp. B1805 [PJIQ]
295809
295733
-
Thr
TGT
[ENA]
¡û
>W1810171986
PJMB01000014
Actinomycetota
Arthrobacter sp. AFG7.2 [PJMB]
62593
62517
-
Thr
TGT
[ENA]
¡û
>W1810271446
PRKX01000029
Actinomycetota
Arthrobacter agilis CGMCC 1.15723 [PRKX]
608198
608122
-
Thr
TGT
[ENA]
¡û
>W2010158325
CAAKGY010000055
Actinomycetota
Arthrobacter sp. DR-2P [CAAKGY]
8536
8612
+
Thr
TGT
[ENA]
¡û
>W2010633604
JABTYH010000023
Actinomycetota
Pseudarthrobacter oxydans USM2 [JABTYH]
70279
70203
-
Thr
TGT
[ENA]
¡û
>W2010698293
JACHEE010000004
Actinomycetota
Arthrobacter sp. AZCC_0090 [JACHEE]
389614
389540
-
Thr
TGT
[ENA]
¡û
>W2011158773
OCST01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
348022
347946
-
Thr
TGT
[ENA]
¡û
>W2011260454
QJQZ01000051
Actinomycetota
Paenarthrobacter nitroguajacolicus xwA8 [QJQZ]
37089
37165
+
Thr
TGT
[ENA]
¡û
>W2011553541
SDXQ01000002
Actinomycetota
Arthrobacter sp. TS-15 [SDXQ]
2499
2423
-
Thr
TGT
[ENA]
¡û
>W2011642396
SMZQ01000020
Actinomycetota
Arthrobacter nitrophenolicus S-A1 [SMZQ]
14106
14030
-
Thr
TGT
[ENA]
¡û
>W2011654553
SOBD01000020
Actinomycetota
Arthrobacter sp. 1704 [SOBD]
24281
24205
-
Thr
TGT
[ENA]
¡û
>W2011654771
SOBI01000009
Actinomycetota
Arthrobacter sp. AG258 [SOBI]
212198
212123
-
Thr
TGT
[ENA]
¡û
>W2011659885
SOFI01000003
Actinomycetota
Cryobacterium mesophilum CGMCC 1.10440 [SOFI]
1055228
1055304
+
Thr
TGT
[ENA]
¡û
>W2011693002
SSWH01000005
Actinomycetota
Arthrobacter echini AM23 [SSWH]
8135
8211
+
Thr
TGT
[ENA]
¡û
>W2011754077
SZWI01000003
Actinomycetota
Arthrobacter sp. NamB2 [SZWI]
478982
478906
-
Thr
TGT
[ENA]
¡û
>W2011958619
VAHM01000025
Actinomycetota
Arthrobacter sp. NamB4 [VAHM]
11763
11839
+
Thr
TGT
[ENA]
¡û
>W2012017924
VFMU01000001
Actinomycetota
Arthrobacter sp. IMM11 [VFMU]
1901173
1901249
+
Thr
TGT
[ENA]
¡û
>W2012018164
VFMX01000001
Actinomycetota
Arthrobacter sp. GZK-1 [VFMX]
578858
578782
-
Thr
TGT
[ENA]
¡û
>W2012018197
VFMY01000001
Actinomycetota
BA34(2011) [VFMY]
3839849
3839923
+
Thr
TGT
[ENA]
¡û
>W2012018257
VFMZ01000001
Actinomycetota
Arthrobacter sp. SLBN-53 [VFMZ]
2701656
2701582
-
Thr
TGT
[ENA]
¡û
>W2012019372
VFNR01000001
Actinomycetota
Arthrobacter sp. 32-OD9 [VFNR]
543372
543296
-
Thr
TGT
[ENA]
¡û
>W2012030234
VHIJ01000030
Actinomycetota
Pseudarthrobacter sp. B4EP4b [VHIJ]
103434
103360
-
Thr
TGT
[ENA]
¡û
>W2012031143
VHJD01000009
Actinomycetota
Pseudarthrobacter phenanthrenivorans MHSD1 [VHJD]
8726
8802
+
Thr
TGT
[ENA]
¡û
>W2012408769
WOWL01000001
Actinomycetota
Pseudarthrobacter sp. GA104 [WOWL]
1372310
1372234
-
Thr
TGT
[ENA]
¡û
>W2110029500
BMKU01000006
Actinomycetota
Pseudarthrobacter polychromogenes CGMCC 1.1927 [BMKU]
8875
8951
+
Thr
TGT
[ENA]
¡û
>W2110029562
BMKV01000009
Actinomycetota
Pseudarthrobacter scleromae CGMCC 1.3601 [BMKV]
8686
8762
+
Thr
TGT
[ENA]
¡û
>W2110029921
BMLC01000002
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.5381 [BMLC]
347990
347914
-
Thr
TGT
[ENA]
¡û
>W2110035358
BMPM01000014
Actinomycetota
Paenarthrobacter histidinolovorans JCM 2520 [BMPM]
32630
32706
+
Thr
TGT
[ENA]
¡û
>W2110160497
JAAUWU010000033
Actinomycetota
Arthrobacter sp. S13_S34 [JAAUWU]
15112
15036
-
Thr
TGT
[ENA]
¡û
>W2110458528
JAFBCC010000001
Actinomycetota
Arthrobacter tumbae DSM 16406 [JAFBCC]
2293341
2293417
+
Thr
TGT
[ENA]
¡û
>W2110499297
JAFIBI010000001
Actinomycetota
Arthrobacter sp. PvP023 [JAFIBI]
4199421
4199345
-
Thr
TGT
[ENA]
¡û
>W2110553461
JAGINZ010000001
Actinomycetota
Paenarthrobacter nicotinovorans DSM 420 [JAGINZ]
1096489
1096413
-
Thr
TGT
[ENA]
¡û
>W2110635501
JAHOPC010000019
Actinomycetota
Paenarthrobacter sp. MMS21-TAE1-1 [JAHOPC]
32747
32823
+
Thr
TGT
[ENA]
¡û
>C201084676
CP040174
Actinomycetota
Arthrobacter sp. UKPF54-2 [CP040174]
593370
593294
-
Thr
TGT
-
¡û
>C211024726
AP024636
Actinomycetota
Arthrobacter sp. NtRootA9 [AP024636]
919632
919708
+
Thr
TGT
-
¡û
>C211024826
AP024639
Actinomycetota
Arthrobacter sp. NtRootC45 [AP024639]
897516
897592
+
Thr
TGT
-
¡û
>C211024930
AP024643
Actinomycetota
Arthrobacter sp. StoSoilA2 [AP024643]
981881
981957
+
Thr
TGT
-
¡û
>C211025034
AP024646
Actinomycetota
Arthrobacter sp. StoSoilB5 [AP024646]
928983
929057
+
Thr
TGT
-
¡û
>C211030246
CP014571
Actinomycetota
Arthrobacter sp. D5-1 [CP014571]
1092064
1092140
+
Thr
TGT
-
¡û
>C211093962
CP053549
Actinomycetota
Paenarthrobacter sp. YJN-D [CP053549]
1780814
1780890
+
Thr
TGT
-
¡û
>W1510018504
BBUD01000393
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
2269
2195
-
Thr
TGT
[ENA]
¡û
>C231161097
CP078079
Actinomycetota
Pseudarthrobacter sp. L1SW [CP078079]
787967
788043
+
Thr
TGT
-
¡û
>C231193708
CP084556
Actinomycetota
Arthrobacter sp. FW306-05-C [CP084556]
750986
751060
+
Thr
TGT
-
¡û
>C231499769
CP104877
Actinomycetota
Paenarthrobacter sp. JL.01a [CP104877]
954837
954913
+
Thr
TGT
-
¡û
>C231548440
CP113343
Actinomycetota
Arthrobacter sp. MMS18-M83 [CP113343]
2199959
2199885
-
Thr
TGT
-
¡û
>C231550373
CP113505
Actinomycetota
Arthrobacter sp. FX8 [CP113505]
123117
123193
+
Thr
TGT
-
¡û
>C241017617
CP017146
Actinomycetota
Marisediminicola antarctica ZS314 [CP017146]
1160710
1160636
-
Thr
TGT
-
¡û
>W1510641742
CVLG01000001
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
1350426
1350502
+
Thr
TGT
[ENA]
¡û
>W1511489613
JWTB01000014
Actinomycetota
Pseudarthrobacter phenanthrenivorans SWC37 [JWTB]
11408
11482
+
Thr
TGT
[ENA]
¡û
>W1511523710
JYCN01000009
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
18543
18619
+
Thr
TGT
[ENA]
¡û
>W1610081912
BDDW01000021
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
36882
36958
+
Thr
TGT
[ENA]
¡û
>W1610737958
LMON01000009
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
19780
19704
-
Thr
TGT
[ENA]
¡û
>W1610738647
LMPC01000019
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
18343
18419
+
Thr
TGT
[ENA]
¡û
>W1610742373
LMSB01000013
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
26472
26548
+
Thr
TGT
[ENA]
¡û
>W1610742735
LMSH01000007
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
51162
51086
-
Thr
TGT
[ENA]
¡û
>W1610743092
LMSO01000003
Actinomycetota
Arthrobacter sp. Soil782 [LMSO]
8883
8959
+
Thr
TGT
[ENA]
¡û
>W1610767822
LNQM01000014
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
15015
14939
-
Thr
TGT
[ENA]
¡û
>W1610774457
LNUV01000006
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
429720
429796
+
Thr
TGT
[ENA]
¡û
>W1710080627
BDDW01000021
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
36882
36958
+
Thr
TGT
[ENA]
¡û
>W1710527672
FNLE01000003
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
4230523
4230447
-
Thr
TGT
[ENA]
¡û
>W1710529034
FNNR01000016
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
7166
7090
-
Thr
TGT
[ENA]
¡û
>W1710577649
FPAY01000012
Actinomycetota
Arthrobacter sp. ov118 [FPAY]
9877
9953
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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