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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236206 (29 seq.)
>W1711705116
MSQD01000019
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
13974
14049
+
Trp
CCA
[ENA]
¡û
>WENV180284378
OBID01036465
[OBID] metagenome; sludge
1121
1046
-
Trp
CCA
[ENA]
¢þ
>WENV180380860
OBOR01038027
[OBOR] marine metagenome; ENVO 00002227
267
194
-
Trp
CCA
[ENA]
¢þ
>WENV181189302
OEOF01021081
[OEOF] activated sludge metagenome; Activated Sludge
22
97
+
Trp
CCA
[ENA]
¢þ
>W141193954
AYSN01000016
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
8893
8818
-
Trp
CCA
[ENA]
¡û
>W141238368
BBKT01000051
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
17645
17570
-
Trp
CCA
[ENA]
¡û
>WENV170002760
AGTN01122073
[AGTN] bioreactor metagenome; poplar biomass
195
270
+
Trp
CCA
[ENA]
¢þ
>WENV170562698
CZCB01004751
[CZCB] anaerobic digester metagenome; anaerobic digester
34671
34746
+
Trp
CCA
[ENA]
¢þ
>WENV170562870
CZCB01006372
[CZCB] anaerobic digester metagenome; anaerobic digester
23028
22953
-
Trp
CCA
[ENA]
¢þ
>WENV170651707
JRYG01000671
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
4929
4854
-
Trp
CCA
[ENA]
¢þ
>WENV170685501
LFRM01095722
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2
77
+
Trp
CCA
[ENA]
¢þ
>WENV170685805
LFRM01109264
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23912
23837
-
Trp
CCA
[ENA]
¢þ
>WENV170688031
LFRM01223644
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
25773
25848
+
Trp
CCA
[ENA]
¢þ
>WENV170726607
LSQX01387610
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
15651
15726
+
Trp
CCA
[ENA]
¢þ
>C181021915
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
2872412
2872487
+
Trp
CCA
-
¡û
>W09134973
ACVG01000001
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
215476
215551
+
Trp
CCA
[ENA]
¡û
>W1910747713
MINB01000016
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
28926
29001
+
Trp
CCA
[ENA]
¡û
>W1910976741
NKHD01000042
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
2350
2275
-
Trp
CCA
[ENA]
¡û
>C10113859
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
1264518
1264443
-
Trp
CCA
[Ensembl]
¡û
>C11123317
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
1517520
1517595
+
Trp
CCA
[Ensembl]
¡û
>W11150414
AEVQ01000001
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
20032
20107
+
Trp
CCA
[ENA]
¡û
>C121007626
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2052501
2052576
+
Trp
CCA
[Ensembl]
¡û
>C131001946
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
1192726
1192651
-
Trp
CCA
[Ensembl]
¡û
>W1610605305
LFRU01000052
Bacillota
Syntrophothermus sp. DTU052 [LFRU]
25773
25848
+
Trp
CCA
[ENA]
¡û
>W1610605627
LFSD01000039
Bacillota
Clostridiales bacterium DTU075 [LFSD]
23912
23837
-
Trp
CCA
[ENA]
¡û
>W1610606265
LFSS01000052
Bacillota
Syntrophothermus sp. DTU052 [LFSS]
25773
25848
+
Trp
CCA
[ENA]
¡û
>W1710726625
LFRU01000052
Bacillota
Syntrophothermus sp. DTU052 [LFRU]
25773
25848
+
Trp
CCA
[ENA]
¡û
>W1710726914
LFSD01000039
Bacillota
Clostridiales bacterium DTU075 [LFSD]
23912
23837
-
Trp
CCA
[ENA]
¡û
>W1710727552
LFSS01000052
Bacillota
Syntrophothermus sp. DTU052 [LFSS]
25773
25848
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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