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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236366 (50 seq.)
>W1711487606
MKGE01000001
Bacillota
Limosilactobacillus fermentum [MKGE]
11831
11756
-
Met
CAT
[ENA]
¡û
>C002633
CP000238
Gammaproteobacteria
Baumannia cicadellinicola str. Hc [Homalodisca coagulata] [CP000238]
668013
667937
-
Met
CAT
[Ensembl]
¡û
>WENV180320576
OBKQ01000143
[OBKQ] soil metagenome; Clay
1252
1176
-
fMet
CAT
[ENA]
¡û
>WENV180344201
OBLK01272281
[OBLK] soil metagenome; Clay
5
81
+
fMet
CAT
[ENA]
¡û
>WENV180584525
OCOJ01051835
[OCOJ] soil metagenome; soil
1010
1086
+
fMet
CAT
[ENA]
¡û
>WENV180584927
OCOJ01705777
[OCOJ] soil metagenome; soil
376
300
-
fMet
CAT
[ENA]
¡û
>W141092492
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
658138
658213
+
Met
CAT
[ENA]
¡û
>WENV181293289
OFHG01000963
[OFHG] soil metagenome; Clay
10015
9939
-
fMet
CAT
[ENA]
¡û
>WENV181296936
OFHK01002603
[OFHK] soil metagenome; Clay
1571
1495
-
fMet
CAT
[ENA]
¡û
>WENV181405323
OGCD01000586
[OGCD] insect metagenome; haemolymph
1569
1645
+
fMet
CAT
[ENA]
¡û
>WENV183335635
OLWG01017200
[OLWG] human gut metagenome; feces
1036
1112
+
fMet
CAT
[ENA]
¡û
>WENV170717330
LSQX01032046
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
173
97
-
Met
CAT
[ENA]
¡û
>C191121365
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
602467
602542
+
Met
CAT
-
¡û
>C191138221
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
1494188
1494264
+
Met
CAT
-
¡û
>C191138243
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
2530685
2530609
-
Met
CAT
-
¡û
>W1910374083
FUHY01000067
Bacillota
Lactobacillus fermentum S13 [FUHY]
81625
81550
-
Met
CAT
[ENA]
¡û
>W1910496847
FXVB02000087
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
273
349
+
Met
CAT
[ENA]
¡û
>W1910496853
FXVB02000089
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
273
349
+
Met
CAT
[ENA]
¡û
>W1910954310
NJPQ01000008
Bacillota
Lactobacillus fermentum SHI-2 [NJPQ]
55910
55835
-
Met
CAT
[ENA]
¡û
>W1810297077
PTLW01000044
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
1823
1898
+
Met
CAT
[ENA]
¡û
>W1810489167
QAZV01000007
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
1786
1861
+
Met
CAT
[ENA]
¡û
>W2010401956
FUHY01000067
Bacillota
Lactobacillus fermentum S13 [FUHY]
81625
81550
-
fMet
CAT
[ENA]
¡û
>W2010416550
FXVB02000087
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
273
349
+
fMet
CAT
[ENA]
¡û
>W2010416556
FXVB02000089
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
273
349
+
fMet
CAT
[ENA]
¡û
>W2010471919
JAAHBV010000070
Gammaproteobacteria
Pseudomonas sp. MAFF212428 [JAAHBV]
8
84
+
fMet
CAT
[ENA]
¡û
>W2010987237
NJPQ01000008
Bacillota
Lactobacillus fermentum SHI-2 [NJPQ]
55910
55835
-
fMet
CAT
[ENA]
¡û
>W2011385218
RBUF01000413
Gammaproteobacteria
Pseudomonas syringae pv. aptata ICMP 11935 [RBUF]
9024
8948
-
fMet
CAT
[ENA]
¡û
>W2011385956
RBUV01000240
Gammaproteobacteria
Pseudomonas syringae pv. pisi ICMP 4433 [RBUV]
4649
4725
+
fMet
CAT
[ENA]
¡û
>W2011965205
VBST01000007
Bacillota
Lactobacillus fermentum FAM 19471 [VBST]
1774
1849
+
fMet
CAT
[ENA]
¡û
>W2012153494
VULR01000017
Bacillota
Anaerosalibacter bizertensis Med78-601-WT-4W-RMD-3 [VULR]
438
514
+
fMet
CAT
[ENA]
¡û
>W2012153513
VULR01000026
Bacillota
Anaerosalibacter bizertensis Med78-601-WT-4W-RMD-3 [VULR]
368
444
+
fMet
CAT
[ENA]
¡û
>W2110057719
BOLH01000001
Bacillota
Limosilactobacillus fermentum 01-B1 [BOLH]
174700
174625
-
fMet
CAT
[ENA]
¡û
>W2110196037
JABXWU010000003
Bacillota
Alkalibacillus aidingensis YIM 98829 [JABXWU]
975
1051
+
fMet
CAT
[ENA]
¡û
>W2110619518
JAHLOA010000004
Bacillota
Anaerosalibacter bizertensis N103 [JAHLOA]
283066
282990
-
fMet
CAT
[ENA]
¡û
>W2110619547
JAHLOA010000023
Bacillota
Anaerosalibacter bizertensis N103 [JAHLOA]
30440
30364
-
fMet
CAT
[ENA]
¡û
>C211144398
CP061275
Gammaproteobacteria
Buchnera aphidicola (Pentalonia nigronervosa) [CP061275]
352344
352268
-
fMet
CAT
-
¡û
>C211282349
CP070999
Bacillota
Limosilactobacillus fermentum GR1009 [CP070999]
647777
647852
+
fMet
CAT
-
¡û
>C211282406
CP071000
Bacillota
Limosilactobacillus fermentum GR1008 [CP071000]
658847
658922
+
fMet
CAT
-
¡û
>W2110720466
JAJBNW010000189
Bacillota
Anaerosalibacter bizertensis MSK.14.19 [JAJBNW]
144
68
-
fMet
CAT
[ENA]
¡û
>W1510022557
CBZV010000018
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
40873
40798
-
Met
CAT
[ENA]
¡û
>W2110760545
QOCO01000034
Bacillota
Limosilactobacillus fermentum HPLD [QOCO]
1666
1741
+
fMet
CAT
[ENA]
¡û
>W2110768942
SJJV01000007
Bacillota
Limosilactobacillus fermentum UC3641 [SJJV]
55966
55891
-
fMet
CAT
[ENA]
¡û
>C231631499
CP120668
Bacillota
Limosilactobacillus fermentum CYLB55 [CP120668]
1543886
1543811
-
fMet
CAT
-
¡û
>C231641626
CP121468
Bacillota
Limosilactobacillus fermentum MSJK0025 [CP121468]
667909
667984
+
fMet
CAT
-
¡û
>C241305284
CP132903
Gammaproteobacteria
Arsenophonus sp. [CP132903]
17314
17238
-
fMet
CAT
-
¡û
>C241305328
CP132907
Gammaproteobacteria
Arsenophonus sp. [CP132907]
177050
177126
+
fMet
CAT
-
¡û
>W1511589535
LBDH01000013
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
62438
62363
-
Met
CAT
[ENA]
¡û
>W1511650598
LEFP01000025
Gammaproteobacteria
Pseudomonas aeruginosa Pae_CF67.06s [LEFP]
47851
47927
+
Met
CAT
[ENA]
¡û
>W1511655234
LEJE01000050
Gammaproteobacteria
Pseudomonas aeruginosa Pae_CF67.12a [LEJE]
144637
144713
+
Met
CAT
[ENA]
¡û
>W1610605151
LFRQ01000128
Bacillota
Clostridia bacterium DTU022 [LFRQ]
438
362
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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