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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237170 (64 seq.)
>W1710861310
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
268397
268324
-
Lys
CTT
[ENA]
¡û
>W1710869687
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
789825
789750
-
Lys
CTT
[ENA]
¡û
>W1710870311
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
461658
461583
-
Lys
CTT
[ENA]
¡û
>W1710875022
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
839042
838967
-
Lys
CTT
[ENA]
¡û
>W1710875741
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
777583
777658
+
Lys
CTT
[ENA]
¡û
>W1710876203
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
789872
789797
-
Lys
CTT
[ENA]
¡û
>W1711173310
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
99880
99955
+
Lys
CTT
[ENA]
¡û
>W131216954
ATWH01000011
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
182468
182543
+
Lys
CTT
[ENA]
¡û
>W1711461543
MJGW01000017
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
268611
268536
-
Lys
CTT
[ENA]
¡û
>C171127450
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
2459265
2459190
-
Lys
CTT
-
¡û
>w013968
AAOB01000005
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
16301
16226
-
Lys
CTT
[ENA]
¡û
>WENV180016042
FSTY01000291
[FSTY] metagenome; soil
5733
5658
-
Lys
CTT
[ENA]
¢þ
>WENV170700542
LIDZ01015163
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
4033
4106
+
Lys
CTT
[ENA]
¢þ
>WENV170784302
MCHG01000657
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
6245
6320
+
Lys
CTT
[ENA]
¢þ
>C181143968
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
638733
638808
+
Lys
CTT
-
¡û
>C191071508
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
4149660
4149735
+
Lys
CTT
-
¡û
>C191100989
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2423300
2423375
+
Lys
CTT
-
¡û
>C191139344
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
1159528
1159455
-
Lys
CTT
-
¡û
>W141809709
JPRS01000120
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
303
230
-
Lys
CTT
[ENA]
¡û
>W1910785519
MQTR01000183
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
36664
36739
+
Lys
CTT
[ENA]
¡û
>W1910857625
NBXC01000008
Actinomycetota
Subtercola boreus P27924 [NBXC]
225118
225193
+
Lys
CTT
[ENA]
¡û
>W1910857667
NBXD01000007
Actinomycetota
Subtercola boreus P27979 [NBXD]
249341
249416
+
Lys
CTT
[ENA]
¡û
>W1910857711
NBXE01000008
Actinomycetota
Subtercola boreus P28004 [NBXE]
225008
225083
+
Lys
CTT
[ENA]
¡û
>W1911497866
OCST01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
514129
514204
+
Lys
CTT
[ENA]
¡û
>W1911671573
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
770776
770701
-
Lys
CTT
[ENA]
¡û
>W1810090191
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
1078251
1078324
+
Lys
CTT
[ENA]
¡û
>W1810168633
PJJJ01000036
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
2361
2286
-
Lys
CTT
[ENA]
¡û
>W1810168673
PJJK01000116
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
123866
123793
-
Lys
CTT
[ENA]
¡û
>W1810168704
PJJL01000070
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
166968
167041
+
Lys
CTT
[ENA]
¡û
>W1810168806
PJJN01000036
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
188465
188392
-
Lys
CTT
[ENA]
¡û
>W1810168851
PJJO01000061
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
359354
359427
+
Lys
CTT
[ENA]
¡û
>W1810168891
PJJP01000039
Actinomycetota
Cryobacterium sp. N22 [PJJP]
629576
629501
-
Lys
CTT
[ENA]
¡û
>W1810168934
PJJQ01000034
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
416658
416733
+
Lys
CTT
[ENA]
¡û
>W1810168949
PJJR01000041
Actinomycetota
Cryobacterium sp. N19 [PJJR]
14459
14534
+
Lys
CTT
[ENA]
¡û
>W1810169028
PJJS01000054
Actinomycetota
Cryobacterium sp. M96 [PJJS]
18369
18443
+
Lys
CTT
[ENA]
¡û
>W1810169055
PJJT01000086
Actinomycetota
Cryobacterium sp. M91 [PJJT]
154677
154602
-
Lys
CTT
[ENA]
¡û
>W1810169080
PJJU01000017
Actinomycetota
Cryobacterium sp. M25 [PJJU]
931
857
-
Lys
CTT
[ENA]
¡û
>W1810169165
PJJV01000081
Actinomycetota
Cryobacterium sp. M23 [PJJV]
58716
58791
+
Lys
CTT
[ENA]
¡û
>W1810169197
PJJW01000039
Actinomycetota
Cryobacterium sp. M15 [PJJW]
188335
188408
+
Lys
CTT
[ENA]
¡û
>W1810242619
PPXD01000026
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
147663
147588
-
Lys
CTT
[ENA]
¡û
>W1810242647
PPXE01000020
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
151160
151085
-
Lys
CTT
[ENA]
¡û
>W1810242676
PPXF01000011
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
146519
146444
-
Lys
CTT
[ENA]
¡û
>W1810282002
PSXW01000015
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
25869
25943
+
Lys
CTT
[ENA]
¡û
>W1810364703
PVTL01000003
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
190340
190415
+
Lys
CTT
[ENA]
¡û
>W1810568865
QEEX01000002
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
163448
163523
+
Lys
CTT
[ENA]
¡û
>W1810627279
QHLY01000012
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
1243400
1243325
-
Lys
CTT
[ENA]
¡û
>W1511317434
JPXF01000069
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
17546
17471
-
Lys
CTT
[ENA]
¡û
>C161095696
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
2592910
2592835
-
Lys
CTT
[Ensembl]
¡û
>W121043557
AHWA01000004
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
219191
219116
-
Lys
CTT
[ENA]
¡û
>W1610723656
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
268397
268324
-
Lys
CTT
[ENA]
¡û
>W1610732033
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
789825
789750
-
Lys
CTT
[ENA]
¡û
>W1610732657
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
461658
461583
-
Lys
CTT
[ENA]
¡û
>W1610737368
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
839042
838967
-
Lys
CTT
[ENA]
¡û
>W1610738087
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
777583
777658
+
Lys
CTT
[ENA]
¡û
>W1610738549
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
789872
789797
-
Lys
CTT
[ENA]
¡û
>W1610981915
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
99880
99955
+
Lys
CTT
[ENA]
¡û
>W1710520669
FNFU01000015
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
66190
66115
-
Lys
CTT
[ENA]
¡û
>W1710523546
FNIB01000009
Actinomycetota
Cryobacterium flavum [FNIB]
67963
68038
+
Lys
CTT
[ENA]
¡û
>W1710546917
FOCN01000004
Actinomycetota
Cryobacterium luteum [FOCN]
211242
211317
+
Lys
CTT
[ENA]
¡û
>W1710563678
FOPW01000006
Actinomycetota
Cryobacterium levicorallinum [FOPW]
154724
154649
-
Lys
CTT
[ENA]
¡û
>W1710603947
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1880193
1880268
+
Lys
CTT
[ENA]
¡û
>W1710608056
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
645126
645201
+
Lys
CTT
[ENA]
¡û
>W1710608517
FXAY01000001
Actinomycetota
Agreia pratensis [FXAY]
331692
331617
-
Lys
CTT
[ENA]
¡û
>W1710609337
FXWJ01000002
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
740214
740139
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK