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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237197 (83 seq.)
>W1710796474
LJSC01000044
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
4543
4618
+
Trp
CCA
[ENA]
¡û
>W1710913042
LNSD01000001
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
209307
209232
-
Trp
CCA
[ENA]
¡û
>W1710913087
LNSE01000001
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
502470
502545
+
Trp
CCA
[ENA]
¡û
>W1710913132
LNSF01000001
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
209307
209232
-
Trp
CCA
[ENA]
¡û
>W1710913176
LNSG01000001
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
368179
368254
+
Trp
CCA
[ENA]
¡û
>W1710913230
LNSH01000003
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
209307
209232
-
Trp
CCA
[ENA]
¡û
>W1710913286
LNSI01000006
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
5364
5439
+
Trp
CCA
[ENA]
¡û
>W1710913324
LNSJ01000004
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
163346
163271
-
Trp
CCA
[ENA]
¡û
>W1710913391
LNSK01000006
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
137870
137945
+
Trp
CCA
[ENA]
¡û
>W1711127866
LURA01000099
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
62326
62401
+
Trp
CCA
[ENA]
¡û
>W1711127902
LURB01000082
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
15914
15839
-
Trp
CCA
[ENA]
¡û
>W1711127917
LURC01000250
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
3627
3552
-
Trp
CCA
[ENA]
¡û
>W1711127927
LURE01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
15967
15892
-
Trp
CCA
[ENA]
¡û
>W1711128051
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
146938
147013
+
Trp
CCA
[ENA]
¡û
>W1711386418
MEFH01000065
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
22468
22393
-
Trp
CCA
[ENA]
¡û
>W131100403
AOUN01000002
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
387602
387527
-
Trp
CCA
[ENA]
¡û
>W1711503962
MKUC01000055
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
15090
15015
-
Trp
CCA
[ENA]
¡û
>W1711504865
MKUZ01000001
Alphaproteobacteria
Devosia sp. 66-22 [MKUZ]
11047
11122
+
Trp
CCA
[ENA]
¡û
>W1711504923
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
975735
975660
-
Trp
CCA
[ENA]
¡û
>W1711506121
MKWD01000007
Alphaproteobacteria
Rhodobacterales bacterium 65-51 [MKWD]
3487
3562
+
Trp
CCA
[ENA]
¡û
>w012839
AAMU01000003
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [AAMU]
420418
420341
-
Trp
CCA
[ENA]
¡û
>WENV180284202
OBID01020810
[OBID] metagenome; sludge
888
963
+
Trp
CCA
[ENA]
¢þ
>WENV181166929
OEIU01004354
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2246
2171
-
Trp
CCA
[ENA]
¢þ
>WENV181308270
OFIS01001820
[OFIS] sludge metagenome; sludge
2043
2118
+
Trp
CCA
[ENA]
¢þ
>WENV181402243
OFTY01000306
[OFTY] sludge metagenome; sludge
23897
23822
-
Trp
CCA
[ENA]
¢þ
>WENV183729046
PJTQ01003194
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1734
1809
+
Trp
CCA
[ENA]
¢þ
>WENV183729376
PJTQ01030594
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
507
582
+
Trp
CCA
[ENA]
¢þ
>WENV183740353
PJUF01001321
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3959
4034
+
Trp
CCA
[ENA]
¢þ
>WENV170305753
CESI01204989
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
380
305
-
Trp
CCA
[ENA]
¢þ
>WENV170728815
LULF01001062
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
5262
5187
-
Trp
CCA
[ENA]
¢þ
>WENV170732577
LULJ01000137
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
16038
15963
-
Trp
CCA
[ENA]
¢þ
>WENV170734950
LULK01034350
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
632
707
+
Trp
CCA
[ENA]
¢þ
>WENV170736061
LULL01036882
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
473
548
+
Trp
CCA
[ENA]
¢þ
>WENV170736251
LULM01000458
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
6847
6772
-
Trp
CCA
[ENA]
¢þ
>WENV170737561
LULO01000681
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
15684
15609
-
Trp
CCA
[ENA]
¢þ
>WENV170738374
LULP01000070
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
15967
15892
-
Trp
CCA
[ENA]
¢þ
>WENV170739431
LULQ01001268
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
3338
3263
-
Trp
CCA
[ENA]
¢þ
>WENV170740631
LULR01022786
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
1218
1143
-
Trp
CCA
[ENA]
¢þ
>WENV170742107
LULU01001112
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
3627
3552
-
Trp
CCA
[ENA]
¢þ
>WENV170742708
LULV01000189
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
15914
15839
-
Trp
CCA
[ENA]
¢þ
>WENV170743447
LULW01000078
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
62326
62401
+
Trp
CCA
[ENA]
¢þ
>WENV170745688
LULY01027915
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
572
497
-
Trp
CCA
[ENA]
¢þ
>WENV170759502
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
146938
147013
+
Trp
CCA
[ENA]
¢þ
>WENV170761436
LUMV01000369
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
15443
15368
-
Trp
CCA
[ENA]
¢þ
>WENV170762587
LUMW01016878
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
671
596
-
Trp
CCA
[ENA]
¢þ
>WENV170823004
MDSY01049898
[MDSY] marine metagenome; seawater
15222
15147
-
Trp
CCA
[ENA]
¢þ
>WENV170827110
MDSY01123134
[MDSY] marine metagenome; seawater
3637
3562
-
Trp
CCA
[ENA]
¢þ
>C181133082
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
2366156
2366081
-
Trp
CCA
-
¡û
>W1910501772
FYAT01000013
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
291068
291143
+
Trp
CCA
[ENA]
¡û
>W1910549109
FZPA01000002
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
333731
333656
-
Trp
CCA
[ENA]
¡û
>W1910934238
NIWD01000003
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
13097
13022
-
Trp
CCA
[ENA]
¡û
>W1911411568
NWUR01000010
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
176189
176114
-
Trp
CCA
[ENA]
¡û
>W1911495344
OBMT01000001
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
704720
704645
-
Trp
CCA
[ENA]
¡û
>W1911787283
QXXQ01000002
Alphaproteobacteria
Gemmobacter lutimaris YJ-T1-11 [QXXQ]
46890
46965
+
Trp
CCA
[ENA]
¡û
>W1810107967
PHFW01000002
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
713670
713595
-
Trp
CCA
[ENA]
¡û
>W1810504080
QBKP01000004
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
49896
49971
+
Trp
CCA
[ENA]
¡û
>W1810887570
QUQO01000001
Alphaproteobacteria
Parvularcula marina SM1705 [QUQO]
872002
871927
-
Trp
CCA
[ENA]
¡û
>C151051493
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
1399874
1399949
+
Trp
CCA
-
¡û
>C10110138
CP002156
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [CP002156]
2592371
2592296
-
Trp
CCA
[Ensembl]
¡û
>W1511324671
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
959596
959521
-
Trp
CCA
[ENA]
¡û
>C161040510
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
3406133
3406058
-
Trp
CCA
[Ensembl]
¡û
>C161055636
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
385608
385533
-
Trp
CCA
[Ensembl]
¡û
>W1610071378
BCUA01000040
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
32622
32547
-
Trp
CCA
[ENA]
¡û
>W1610077694
BCZQ01000021
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
31669
31594
-
Trp
CCA
[ENA]
¡û
>W1610660431
LJSC01000044
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
4543
4618
+
Trp
CCA
[ENA]
¡û
>W1610771401
LNSD01000001
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
209307
209232
-
Trp
CCA
[ENA]
¡û
>W1610771446
LNSE01000001
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
502470
502545
+
Trp
CCA
[ENA]
¡û
>W1610771491
LNSF01000001
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
209307
209232
-
Trp
CCA
[ENA]
¡û
>W1610771535
LNSG01000001
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
368179
368254
+
Trp
CCA
[ENA]
¡û
>W1610771589
LNSH01000003
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
209307
209232
-
Trp
CCA
[ENA]
¡û
>W1610771645
LNSI01000006
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
5364
5439
+
Trp
CCA
[ENA]
¡û
>W1610771683
LNSJ01000004
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
163346
163271
-
Trp
CCA
[ENA]
¡û
>W1610771750
LNSK01000006
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
137870
137945
+
Trp
CCA
[ENA]
¡û
>W1610938980
LURA01000099
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
62326
62401
+
Trp
CCA
[ENA]
¡û
>W1610939016
LURB01000082
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
15914
15839
-
Trp
CCA
[ENA]
¡û
>W1610939031
LURC01000250
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
3627
3552
-
Trp
CCA
[ENA]
¡û
>W1610939041
LURE01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
15967
15892
-
Trp
CCA
[ENA]
¡û
>W1610939165
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
146938
147013
+
Trp
CCA
[ENA]
¡û
>W1710068743
BCUA01000040
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
32622
32547
-
Trp
CCA
[ENA]
¡û
>W1710075332
BCZQ01000021
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
31669
31594
-
Trp
CCA
[ENA]
¡û
>W1710540039
FNWK01000001
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
338073
337998
-
Trp
CCA
[ENA]
¡û
>W1710602866
FUYP01000001
Alphaproteobacteria
Sphingopyxis flava [FUYP]
220498
220423
-
Trp
CCA
[ENA]
¡û
>W1710609444
FXWL01000002
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
606418
606343
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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