This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237402 (34 seq.)
>W1711170195
LWAF01000004
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
104188
104263
+
Glu
TTC
[ENA]
¡û
>C171000435
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
1523635
1523560
-
Glu
TTC
-
¡û
>C171000747
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
1509476
1509401
-
Glu
TTC
-
¡û
>C171001383
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
1436899
1436974
+
Glu
TTC
-
¡û
>C025698
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
1436794
1436869
+
Glu
TTC
[Ensembl]
¡û
>w019737
AAUK01000011
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
13132
13209
+
Glu
TTC
[ENA]
¡û
>WENV180013922
FPIC01010748
[FPIC] soil metagenome; Soil
3772
3697
-
Glu
TTC
[ENA]
¢þ
>WENV180014394
FQKF010003218
[FQKF] soil metagenome; Soil
270
195
-
Glu
TTC
[ENA]
¢þ
>W141020304
AJIP01000025
Thermotogota
Thermosipho africanus H17ap60334 [AJIP]
74752
74827
+
Glu
TTC
[ENA]
¡û
>WENV181226251
OFDK01000388
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2737
2812
+
Glu
TTC
[ENA]
¢þ
>WENV181285312
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
129811
129886
+
Glu
TTC
[ENA]
¢þ
>C08004997
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1137199
1137127
-
Glu
TTC
[Ensembl]
¡û
>W09106586
AAWH01000008
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
61819
61744
-
Glu
TTC
[ENA]
¡û
>W1910128983
BHXD01000001
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
258518
258593
+
Glu
TTC
[ENA]
¡û
>C09110465
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
1752229
1752304
+
Glu
TTC
[Ensembl]
¡û
>W1910573546
JPMG01000012
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
18829
18754
-
Glu
TTC
[ENA]
¡û
>W1910573583
JPMH01000052
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
5689
5764
+
Glu
TTC
[ENA]
¡û
>W1910990274
NKRG01000002
Thermotogota
Thermosipho africanus Ob7 [NKRG]
96034
95959
-
Glu
TTC
[ENA]
¡û
>W1511355430
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1574956
1575031
+
Glu
TTC
[ENA]
¡û
>C121009887
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1297614
1297689
+
Glu
TTC
[Ensembl]
¡û
>C161034978
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1924104
1924179
+
Glu
TTC
[Ensembl]
¡û
>C161071274
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1327088
1327163
+
Glu
TTC
[Ensembl]
¡û
>W121010828
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
308471
308396
-
Glu
TTC
[ENA]
¡û
>W1710517596
FNDL01000016
Thermotogota
Fervidobacterium changbaicum [FNDL]
12531
12456
-
Glu
TTC
[ENA]
¡û
>W1710586858
FQXN01000001
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
247882
247957
+
Glu
TTC
[ENA]
¡û
>W1710593344
FRDJ01000004
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
159696
159771
+
Glu
TTC
[ENA]
¡û
>W1710660961
JYCX01000004
Thermotogota
Thermosipho melanesiensis [JYCX]
794799
794874
+
Glu
TTC
[ENA]
¡û
>W1710661014
JYCY01000014
Thermotogota
Thermosipho melanesiensis [JYCY]
288797
288872
+
Glu
TTC
[ENA]
¡û
>W1710661060
JYCZ01000014
Thermotogota
Thermosipho melanesiensis [JYCZ]
288799
288874
+
Glu
TTC
[ENA]
¡û
>W1710661104
JYDA01000014
Thermotogota
Thermosipho melanesiensis [JYDA]
288790
288865
+
Glu
TTC
[ENA]
¡û
>W1710661148
JYDB01000014
Thermotogota
Thermosipho melanesiensis [JYDB]
288795
288870
+
Glu
TTC
[ENA]
¡û
>W1710701260
LBEX01000018
Thermotogota
Thermosipho sp. 1074 [LBEX]
224826
224751
-
Glu
TTC
[ENA]
¡û
>W1710701303
LBEY01000032
Thermotogota
Thermosipho sp. 1223 [LBEY]
186487
186412
-
Glu
TTC
[ENA]
¡û
>W1710701349
LBFC01000022
Thermotogota
Thermosipho affectus [LBFC]
186323
186248
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK