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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23751 (102 seq.)
>W1711052101
LRSP01000008
Betaproteobacteria
Bordetella pseudohinzii [LRSP]
66469
66558
+
Ser
TGA
[ENA]
¡û
>W1711052155
LRSQ01000008
Betaproteobacteria
Bordetella pseudohinzii [LRSQ]
48689
48600
-
Ser
TGA
[ENA]
¡û
>W1711055144
LRUJ01000003
Betaproteobacteria
Bordetella hinzii LMG 13501 [LRUJ]
101587
101676
+
Ser
TGA
[ENA]
¡û
>W131059180
ANGE01000097
Betaproteobacteria
Bordetella holmesii 44057 [ANGE]
2295
2206
-
Ser
TGA
[ENA]
¡û
>W131089826
AOEW01000002
Betaproteobacteria
Bordetella holmesii F627 [AOEW]
145807
145896
+
Ser
TGA
[ENA]
¡û
>W131090149
AOFR01000006
Betaproteobacteria
Bordetella holmesii H558 [AOFR]
153228
153317
+
Ser
TGA
[ENA]
¡û
>C171047638
CP016341
Betaproteobacteria
Bordetella holmesii H903 [CP016341]
2527341
2527430
+
Ser
TGA
-
¡û
>C171115890
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
3907953
3907864
-
Ser
TGA
-
¡û
>C001917
AM167904
Betaproteobacteria
Bordetella avium 197N [AM167904]
2878073
2878162
+
Ser
TGA
[Ensembl]
¡û
>W141139306
AWNL01000051
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
21765
21854
+
Ser
TGA
[ENA]
¡û
>W141139348
AWNM01000035
Betaproteobacteria
Bordetella hinzii ATCC 51730 [AWNM]
3255
3166
-
Ser
TGA
[ENA]
¡û
>C08001901
AM902716
Betaproteobacteria
Bordetella petrii DSM 12804 [AM902716]
1678890
1678804
-
Ser
TGA
[Ensembl]
¡û
>W141277142
JAEJ01000018
Betaproteobacteria
Bordetella petrii J49 [JAEJ]
22455
22544
+
Ser
TGA
[ENA]
¡û
>W141277439
JAEP01000003
Betaproteobacteria
Bordetella petrii J51 [JAEP]
200684
200773
+
Ser
TGA
[ENA]
¡û
>W141383361
JDFP01000003
Betaproteobacteria
Bordetella holmesii 30539 [JDFP]
161460
161549
+
Ser
TGA
[ENA]
¡û
>W141400681
JDSC01000002
Betaproteobacteria
Bordetella holmesii 41130 [JDSC]
135989
136078
+
Ser
TGA
[ENA]
¡û
>W141400885
JDSJ01000004
Betaproteobacteria
Bordetella holmesii 70147 [JDSJ]
882916
883005
+
Ser
TGA
[ENA]
¡û
>W141400907
JDSK01000001
Betaproteobacteria
Bordetella holmesii 35009 [JDSK]
151546
151635
+
Ser
TGA
[ENA]
¡û
>W141401931
JDTF01000004
Betaproteobacteria
Bordetella holmesii 1058 [JDTF]
1844976
1845065
+
Ser
TGA
[ENA]
¡û
>WENV170784459
MCND01000150
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2947
3036
+
Ser
TGA
[ENA]
¢þ
>WENV170784671
MCNF01001490
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
532
621
+
Ser
TGA
[ENA]
¢þ
>W141486061
JFZY01000077
Betaproteobacteria
Bordetella holmesii CDC-H572-BH [JFZY]
2534
2445
-
Ser
TGA
[ENA]
¡û
>W141486105
JFZZ01000106
Betaproteobacteria
Bordetella holmesii CDC-H585-BH [JFZZ]
15297
15386
+
Ser
TGA
[ENA]
¡û
>W141486123
JGAA01000034
Betaproteobacteria
Bordetella holmesii CDC-H635-BH [JGAA]
14966
15055
+
Ser
TGA
[ENA]
¡û
>C181033914
CP018890
Betaproteobacteria
Bordetella holmesii [CP018890]
2523535
2523624
+
Ser
TGA
-
¡û
>C181033968
CP018891
Betaproteobacteria
Bordetella holmesii [CP018891]
2524494
2524583
+
Ser
TGA
-
¡û
>C181034021
CP018892
Betaproteobacteria
Bordetella holmesii [CP018892]
2533491
2533580
+
Ser
TGA
-
¡û
>C181034076
CP018893
Betaproteobacteria
Bordetella holmesii [CP018893]
2532493
2532582
+
Ser
TGA
-
¡û
>C181034130
CP018894
Betaproteobacteria
Bordetella holmesii [CP018894]
2531406
2531495
+
Ser
TGA
-
¡û
>C181034181
CP018895
Betaproteobacteria
Bordetella holmesii [CP018895]
2529386
2529475
+
Ser
TGA
-
¡û
>C181034238
CP018896
Betaproteobacteria
Bordetella holmesii [CP018896]
2521754
2521843
+
Ser
TGA
-
¡û
>C181034340
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
3190918
3191007
+
Ser
TGA
-
¡û
>C181034407
CP018899
Betaproteobacteria
Bordetella holmesii [CP018899]
2529368
2529457
+
Ser
TGA
-
¡û
>C181045590
CP020647
Betaproteobacteria
Bordetella holmesii F028 [CP020647]
2530639
2530728
+
Ser
TGA
-
¡û
>C181045908
CP020653
Betaproteobacteria
Bordetella holmesii C690 [CP020653]
2531105
2531194
+
Ser
TGA
-
¡û
>C181128277
CP026124
Betaproteobacteria
Achromobacter sp. AONIH1 [CP026124]
2570075
2569986
-
Ser
TGA
-
¡û
>C181225584
LT906461
Betaproteobacteria
Bordetella hinzii NCTC13200 [LT906461]
3756495
3756584
+
Ser
TGA
-
¡û
>C191012228
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3365170
3365259
+
Ser
TGA
-
¡û
>C191017166
CP019933
Betaproteobacteria
Bordetella holmesii F274 [CP019933]
1073430
1073341
-
Ser
TGA
-
¡û
>C191026959
CP024172
Betaproteobacteria
Bordetella hinzii H720 [CP024172]
550130
550219
+
Ser
TGA
-
¡û
>C191035861
CP025521
Betaproteobacteria
Bordetella avium Owl19 [CP025521]
2891560
2891649
+
Ser
TGA
-
¡û
>C191035921
CP025522
Betaproteobacteria
Bordetella avium JBBA [CP025522]
2904053
2904142
+
Ser
TGA
-
¡û
>W141520648
JGVZ01000070
Betaproteobacteria
Bordetella holmesii CDC-H629-BH [JGVZ]
2278
2189
-
Ser
TGA
[ENA]
¡û
>W141520718
JGWA01000110
Betaproteobacteria
Bordetella holmesii CDC-H719-BH [JGWA]
15360
15449
+
Ser
TGA
[ENA]
¡û
>W141520742
JGWB01000026
Betaproteobacteria
Bordetella holmesii CDC-H785-BH [JGWB]
15299
15388
+
Ser
TGA
[ENA]
¡û
>W141520788
JGWC01000018
Betaproteobacteria
Bordetella holmesii 04P3421 [JGWC]
2421
2332
-
Ser
TGA
[ENA]
¡û
>W141520875
JGWD01000183
Betaproteobacteria
Bordetella holmesii CDC-H643-BH [JGWD]
2332
2243
-
Ser
TGA
[ENA]
¡û
>W141531790
JHEM01000001
Betaproteobacteria
Bordetella hinzii OH87 BAL007II [JHEM]
28241
28152
-
Ser
TGA
[ENA]
¡û
>W141531885
JHEN01000224
Betaproteobacteria
Bordetella hinzii L60 [JHEN]
24793
24882
+
Ser
TGA
[ENA]
¡û
>W141531985
JHEP01000080
Betaproteobacteria
Bordetella pseudohinzii 8-296-03 [JHEP]
270009
269920
-
Ser
TGA
[ENA]
¡û
>W141532020
JHEP01000084
Betaproteobacteria
Bordetella pseudohinzii 8-296-03 [JHEP]
2861629
2861718
+
Ser
TGA
[ENA]
¡û
>W141532096
JHEQ01000025
Betaproteobacteria
Bordetella hinzii 5132 [JHEQ]
28240
28151
-
Ser
TGA
[ENA]
¡û
>W141532138
JHER01000015
Betaproteobacteria
Bordetella hinzii 4161 [JHER]
101626
101715
+
Ser
TGA
[ENA]
¡û
>W141532186
JHES01000003
Betaproteobacteria
Bordetella hinzii 1277 [JHES]
284214
284125
-
Ser
TGA
[ENA]
¡û
>C191209784
LR134382
Betaproteobacteria
Bordetella hinzii NCTC13199 [LR134382]
4653544
4653455
-
Ser
TGA
-
¡û
>W141621688
JJNW01000273
Betaproteobacteria
Bordetella holmesii H620 [JJNW]
1660
1571
-
Ser
TGA
[ENA]
¡û
>W141697647
JMGZ01000109
Betaproteobacteria
Bordetella holmesii CDC-H809-BH [JMGZ]
15280
15369
+
Ser
TGA
[ENA]
¡û
>W1910890546
NEVI01000005
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
201438
201349
-
Ser
TGA
[ENA]
¡û
>W1910890642
NEVK01000003
Betaproteobacteria
Bordetella genomosp. 7 7 AU18089 [NEVK]
370287
370198
-
Ser
TGA
[ENA]
¡û
>W1910890697
NEVL01000002
Betaproteobacteria
Bordetella genomosp. 1 1 AU17610 [NEVL]
250890
250801
-
Ser
TGA
[ENA]
¡û
>W1910890806
NEVN01000002
Betaproteobacteria
Bordetella genomosp. 5 5 AU14646 [NEVN]
404331
404242
-
Ser
TGA
[ENA]
¡û
>W1910890908
NEVP01000006
Betaproteobacteria
Bordetella genomosp. 5 5 AU10456 [NEVP]
62964
63053
+
Ser
TGA
[ENA]
¡û
>W1910891031
NEVR01000002
Betaproteobacteria
Bordetella genomosp. 1 1 AU9795 [NEVR]
498498
498409
-
Ser
TGA
[ENA]
¡û
>W1910891113
NEVT01000003
Betaproteobacteria
Bordetella genomosp. 2 2 AU8256 [NEVT]
677311
677222
-
Ser
TGA
[ENA]
¡û
>W1910891184
NEVU01000003
Betaproteobacteria
Bordetella genomosp. 12 12 AU6712 [NEVU]
892815
892904
+
Ser
TGA
[ENA]
¡û
>W1911746151
QVSL01000004
Betaproteobacteria
Bordetella avium BA1 [QVSL]
97211
97122
-
Ser
TGA
[ENA]
¡û
>W1911746197
QVSM01000006
Betaproteobacteria
Bordetella avium BA19 [QVSM]
176332
176421
+
Ser
TGA
[ENA]
¡û
>W1911746244
QVSN01000004
Betaproteobacteria
Bordetella avium BA18 [QVSN]
176336
176425
+
Ser
TGA
[ENA]
¡û
>W1911746315
QVSO01000005
Betaproteobacteria
Bordetella avium BA17 [QVSO]
177313
177224
-
Ser
TGA
[ENA]
¡û
>W1911746359
QVSP01000004
Betaproteobacteria
Bordetella avium BA16 [QVSP]
176384
176473
+
Ser
TGA
[ENA]
¡û
>W1911746420
QVSQ01000005
Betaproteobacteria
Bordetella avium BA15 [QVSQ]
176173
176262
+
Ser
TGA
[ENA]
¡û
>W1911746466
QVSR01000005
Betaproteobacteria
Bordetella avium BA14 [QVSR]
176382
176471
+
Ser
TGA
[ENA]
¡û
>W1911746524
QVSS01000005
Betaproteobacteria
Bordetella avium BA13 [QVSS]
176379
176468
+
Ser
TGA
[ENA]
¡û
>W1911746581
QVST01000005
Betaproteobacteria
Bordetella avium BA12 [QVST]
176409
176498
+
Ser
TGA
[ENA]
¡û
>W1911746631
QVSU01000004
Betaproteobacteria
Bordetella avium BA11 [QVSU]
213446
213535
+
Ser
TGA
[ENA]
¡û
>W1911746689
QVSV01000004
Betaproteobacteria
Bordetella avium BA10 [QVSV]
176380
176469
+
Ser
TGA
[ENA]
¡û
>W1911746750
QVSW01000006
Betaproteobacteria
Bordetella avium ATCC 35086 [QVSW]
176426
176515
+
Ser
TGA
[ENA]
¡û
>W1911746804
QVSX01000005
Betaproteobacteria
Bordetella avium BA8 [QVSX]
176347
176436
+
Ser
TGA
[ENA]
¡û
>W1911746885
QVSY01000004
Betaproteobacteria
Bordetella avium BA6 [QVSY]
4587
4676
+
Ser
TGA
[ENA]
¡û
>W1911746917
QVSZ01000005
Betaproteobacteria
Bordetella avium BA5 [QVSZ]
176379
176468
+
Ser
TGA
[ENA]
¡û
>W1911746972
QVTA01000004
Betaproteobacteria
Bordetella avium BA4 [QVTA]
176173
176262
+
Ser
TGA
[ENA]
¡û
>W1911747030
QVTB01000003
Betaproteobacteria
Bordetella avium BA3 [QVTB]
176379
176468
+
Ser
TGA
[ENA]
¡û
>W1810692847
QLKW01000006
Betaproteobacteria
Bordetella avium HAMBI_2160 [QLKW]
97009
96920
-
Ser
TGA
[ENA]
¡û
>C151025369
CP007494
Betaproteobacteria
Bordetella holmesii ATCC 51541 [CP007494]
152803
152892
+
Ser
TGA
[Ensembl]
¡û
>C151025423
CP007495
Betaproteobacteria
Bordetella holmesii 44057 [CP007495]
153042
153131
+
Ser
TGA
[Ensembl]
¡û
>C151090734
CP012076
Betaproteobacteria
Bordetella hinzii F582 [CP012076]
1117549
1117460
-
Ser
TGA
[Ensembl]
¡û
>C151090793
CP012077
Betaproteobacteria
Bordetella hinzii H568 [CP012077]
1100984
1100895
-
Ser
TGA
[Ensembl]
¡û
>W1511310844
JPQP01000022
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
21316
21405
+
Ser
TGA
[ENA]
¡û
>W1511484087
JWMK01000017
Betaproteobacteria
Bordetella avium Nh1210 [JWMK]
44851
44762
-
Ser
TGA
[ENA]
¡û
>C161005208
CP007158
Betaproteobacteria
Bordetella holmesii H558 [CP007158]
141489
141578
+
Ser
TGA
-
¡û
>C161005262
CP007159
Betaproteobacteria
Bordetella holmesii F627 [CP007159]
152705
152794
+
Ser
TGA
-
¡û
>C161097258
CP016440
Betaproteobacteria
Bordetella pseudohinzii HI4681 [CP016440]
3555479
3555568
+
Ser
TGA
-
¡û
>C161109053
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
196385
196474
+
Ser
TGA
[Ensembl]
¡û
>W1610094535
CYTV01000004
Betaproteobacteria
Bordetella pseudohinzii 2789STDY5608636 [CYTV]
58173
58262
+
Ser
TGA
[ENA]
¡û
>W1610447532
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
54205
54294
+
Ser
TGA
[ENA]
¡û
>W1610447646
FKBT01000025
Betaproteobacteria
Bordetella trematum [FKBT]
129415
129326
-
Ser
TGA
[ENA]
¡û
>W1610893289
LRSP01000008
Betaproteobacteria
Bordetella pseudohinzii [LRSP]
66469
66558
+
Ser
TGA
[ENA]
¡û
>W1610893343
LRSQ01000008
Betaproteobacteria
Bordetella pseudohinzii [LRSQ]
48689
48600
-
Ser
TGA
[ENA]
¡û
>W1610896190
LRUJ01000003
Betaproteobacteria
Bordetella hinzii LMG 13501 [LRUJ]
101587
101676
+
Ser
TGA
[ENA]
¡û
>W1710097536
CYTV01000004
Betaproteobacteria
Bordetella pseudohinzii 2789STDY5608636 [CYTV]
58173
58262
+
Ser
TGA
[ENA]
¡û
>W1710447160
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
54205
54294
+
Ser
TGA
[ENA]
¡û
>W1710447274
FKBT01000025
Betaproteobacteria
Bordetella trematum [FKBT]
129415
129326
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK