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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237808 (5 seq.)
>WENV170016160
AZIJ01013612
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
320
244
-
Arg
TCG
[ENA]
¡û
>WENV170260510
CEQZ01055325
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1180
1104
-
Arg
TCG
[ENA]
¡û
>WENV170283786
CERU01111724
[CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1331
1255
-
Arg
TCG
[ENA]
¡û
>W2012130997
VSKK01000001
Bacteroidota
Bizionia myxarmorum ADA-4 [VSKK]
1215808
1215882
+
Arg
TCG
[ENA]
¡û
>W2012131044
VSKL01000001
Bacteroidota
Bizionia algoritergicola APA-1 [VSKL]
38399
38325
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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