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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237980 (42 seq.)
>W131177691
ARKZ01000020
Bacteroidota
Proteiniphilum acetatigenes DSM 18083 [ARKZ]
15331
15407
+
Ala
GGC
[ENA]
¡û
>WENV180132564
OATI01000218
[OATI] human gut metagenome; faeces
37994
38069
+
Ala
GGC
[ENA]
¡û
>WENV180297079
OBJA01009518
[OBJA] soil metagenome; sediment, water from around vicinity
1407
1482
+
Ala
GGC
[ENA]
¡û
>WENV180415584
OBVF01000006
[OBVF] human gut metagenome; faeces
30046
30120
+
Ala
GGC
[ENA]
¡û
>WENV180450102
OBXH01002472
[OBXH] human gut metagenome; faeces
5729
5804
+
Ala
GGC
[ENA]
¡û
>WENV180473739
OBYR01002185
[OBYR] human gut metagenome; faeces
2629
2703
+
Ala
GGC
[ENA]
¡û
>WENV180548229
OCIV01009016
[OCIV] human gut metagenome; human gut
28
103
+
Ala
GGC
[ENA]
¡û
>WENV180955528
ODUK01000003
[ODUK] human metagenome; G_DNA_Stool
199438
199513
+
Ala
GGC
[ENA]
¡û
>WENV181566454
OGJI01040686
[OGJI] metagenome; Human gut stool
794
869
+
Ala
GGC
[ENA]
¡û
>WENV181592558
OGKR01018621
[OGKR] metagenome; Human gut stool
366
291
-
Ala
GGC
[ENA]
¡û
>WENV181868069
OGWW01016491
[OGWW] human gut metagenome; faeces
1304
1229
-
Ala
GGC
[ENA]
¡û
>WENV182086051
OHGT01000224
[OHGT] human gut metagenome; feces
26874
26799
-
Ala
GGC
[ENA]
¡û
>W141225179
BAJA01000017
Bacteroidota
Bacteroides nordii JCM 12987 [BAJA]
59085
59009
-
Ala
GGC
[ENA]
¡û
>WENV182499499
OITT01005469
[OITT] human gut metagenome; human gut
1398
1324
-
Ala
GGC
[ENA]
¡û
>WENV182667827
OJNI01014954
[OJNI] human gut metagenome; feces
2088
2013
-
Ala
GGC
[ENA]
¡û
>WENV182773919
OJRZ01007317
[OJRZ] human gut metagenome; human gut
837
762
-
Ala
GGC
[ENA]
¡û
>WENV182774454
OJSA01000169
[OJSA] human gut metagenome; human gut
75188
75263
+
Ala
GGC
[ENA]
¡û
>WENV182776355
OJSB01008633
[OJSB] human gut metagenome; human gut
1019
944
-
Ala
GGC
[ENA]
¡û
>WENV182782143
OJSE01052073
[OJSE] human gut metagenome; human gut
534
459
-
Ala
GGC
[ENA]
¡û
>WENV182790917
OJSN01000153
[OJSN] human gut metagenome; human gut
75190
75265
+
Ala
GGC
[ENA]
¡û
>WENV182793248
OJSP01000080
[OJSP] human gut metagenome; human gut
75190
75265
+
Ala
GGC
[ENA]
¡û
>WENV182800975
OJUG01000104
[OJUG] human gut metagenome; human gut
75190
75265
+
Ala
GGC
[ENA]
¡û
>WENV182984934
OKZN01004290
[OKZN] human gut metagenome; human gut
1561
1487
-
Ala
GGC
[ENA]
¡û
>WENV183009557
OLDR01001576
[OLDR] human gut metagenome; human gut
1935
2009
+
Ala
GGC
[ENA]
¡û
>WENV183051169
OLGI01016073
[OLGI] human gut metagenome; faeces
257
332
+
Ala
GGC
[ENA]
¡û
>WENV183063415
OLIF01040885
[OLIF] metagenome; faeces
79
155
+
Ala
GGC
[ENA]
¡û
>WENV183080076
OLIY01000178
[OLIY] human gut metagenome; human gut
28523
28448
-
Ala
GGC
[ENA]
¡û
>WENV183091829
OLKG01005039
[OLKG] human gut metagenome; human gut
2704
2779
+
Ala
GGC
[ENA]
¡û
>WENV183223611
OLQM01042357
[OLQM] human gut metagenome; faeces
783
708
-
Ala
GGC
[ENA]
¡û
>WENV170563102
CZCB01010025
[CZCB] anaerobic digester metagenome; anaerobic digester
156
80
-
Ala
GGC
[ENA]
¡û
>WENV170657708
JTFP01011355
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
656
580
-
Ala
GGC
[ENA]
¡û
>WENV170724416
LSQX01304904
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
22353
22429
+
Ala
GGC
[ENA]
¡û
>WENV170967767
MTKW01003270
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
959
1035
+
Ala
GGC
[ENA]
¡û
>WENV170968324
MTKW01008184
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
499
423
-
Ala
GGC
[ENA]
¡û
>W2011961120
VAJL01000001
Bacteroidota
Chryseobacterium sp. CA10 [VAJL]
4564877
4564803
-
Ala
GGC
[ENA]
¡û
>W2110357004
JADNOD010000059
Bacteroidota
Bacteroides nordii BSD2780120875b_170604_D4 [JADNOD]
5897
5972
+
Ala
GGC
[ENA]
¡û
>W2110364240
JADOZI010000332
Bacteroidota
Bacteroides nordii 1001713B170221_170320_G1 [JADOZI]
25458
25533
+
Ala
GGC
[ENA]
¡û
>W2310010315
BMBN01000004
Bacteroidota
Bacteroides nordii C5 [BMBN]
53526
53600
+
Ala
GGC
[ENA]
¡û
>W1511432917
JUGW01000001
Bacteroidota
Chryseobacterium sp. CF356 [JUGW]
84679
84755
+
Ala
GGC
[ENA]
¡û
>W1610613933
LGGN01000055
Bacteroidota
Proteiniphilum acetatigenes [LGGN]
4980
5056
+
Ala
GGC
[ENA]
¡û
>W1610614528
LGHH01000123
Bacteroidota
Proteiniphilum sp. 51_7 [LGHH]
2789
2865
+
Ala
GGC
[ENA]
¡û
>W1710567525
FOSU01000029
Bacteroidota
Porphyromonadaceae bacterium KH3CP3RA [FOSU]
14235
14311
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK