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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237980 (116 seq.)
>W1710815920
LKKQ01000023
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [LKKQ]
285722
285797
+
Phe
GAA
[ENA]
¡û
>W1710815940
LKKQ01000056
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [LKKQ]
20691
20616
-
Phe
GAA
[ENA]
¡û
>W1711175721
LWEY01000978
Gammaproteobacteria
Oleiphilus sp. HI0043 [LWEY]
4238
4163
-
Phe
GAA
[ENA]
¡û
>W1711175907
LWFB01001566
Gammaproteobacteria
Oleiphilus sp. HI0050 [LWFB]
1209
1134
-
Phe
GAA
[ENA]
¡û
>W1711176134
LWFE01000765
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
6911
6986
+
Phe
GAA
[ENA]
¡û
>W1711176162
LWFE01001612
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
233
158
-
Phe
GAA
[ENA]
¡û
>W1711176444
LWFJ01001418
Gammaproteobacteria
Oleiphilus sp. HI0068 [LWFJ]
7355
7280
-
Phe
GAA
[ENA]
¡û
>W1711176502
LWFK01001463
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
48273
48348
+
Phe
GAA
[ENA]
¡û
>W1711176527
LWFK01002198
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
233
158
-
Phe
GAA
[ENA]
¡û
>W1711176625
LWFM01001342
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
2908
2983
+
Phe
GAA
[ENA]
¡û
>W1711176972
LWFS01001343
Gammaproteobacteria
Oleiphilus sp. HI0078 [LWFS]
2451
2376
-
Phe
GAA
[ENA]
¡û
>W1711177143
LWFV01002389
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
1740
1665
-
Phe
GAA
[ENA]
¡û
>W1711177324
LWFY01002834
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
1543
1468
-
Phe
GAA
[ENA]
¡û
>W1711177367
LWFZ01000873
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
9742
9817
+
Phe
GAA
[ENA]
¡û
>W1711177398
LWGA01000484
Gammaproteobacteria
Oleiphilus sp. HI0117 [LWGA]
4978
4903
-
Phe
GAA
[ENA]
¡û
>W1711177702
LWGE01001156
Gammaproteobacteria
Oleiphilus sp. HI0123 [LWGE]
6896
6821
-
Phe
GAA
[ENA]
¡û
>W1711177800
LWGG01000791
Gammaproteobacteria
Oleiphilus sp. HI0128 [LWGG]
3770
3695
-
Phe
GAA
[ENA]
¡û
>W1711177973
LWGJ01001218
Gammaproteobacteria
Oleiphilus sp. HI0132 [LWGJ]
819
744
-
Phe
GAA
[ENA]
¡û
>W1711634905
MPUI01000001
Gammaproteobacteria
Pectobacterium actinidiae subsp. actinidiae [MPUI]
374115
374040
-
Phe
GAA
[ENA]
¡û
>W1711634945
MPUI01000019
Gammaproteobacteria
Pectobacterium actinidiae subsp. actinidiae [MPUI]
1551
1476
-
Phe
GAA
[ENA]
¡û
>W131095278
AOOM01000030
Gammaproteobacteria
Dickeya dianthicola GBBC 2039 [AOOM]
49091
49016
-
Phe
GAA
[ENA]
¡û
>W131095279
AOOM01000031
Gammaproteobacteria
Dickeya dianthicola GBBC 2039 [AOOM]
76
1
-
Phe
GAA
[ENA]
¡û
>W131095657
AOOS01000011
Gammaproteobacteria
Dickeya dianthicola IPO 980 [AOOS]
138651
138576
-
Phe
GAA
[ENA]
¡û
>W131095668
AOOS01000016
Gammaproteobacteria
Dickeya dianthicola IPO 980 [AOOS]
22640
22565
-
Phe
GAA
[ENA]
¡û
>W131187875
ASAB01000008
Gammaproteobacteria
Pectobacterium atrosepticum CFBP 6276 [ASAB]
1271788
1271863
+
Phe
GAA
[ENA]
¡û
>W131187877
ASAB01000008
Gammaproteobacteria
Pectobacterium atrosepticum CFBP 6276 [ASAB]
1675387
1675462
+
Phe
GAA
[ENA]
¡û
>C008290
BX950851
Gammaproteobacteria
Pectobacterium atrosepticum [BX950851]
1075298
1075223
-
Phe
GAA
[Ensembl]
¡û
>C008292
BX950851
Gammaproteobacteria
Pectobacterium atrosepticum [BX950851]
688659
688584
-
Phe
GAA
[Ensembl]
¡û
>WENV180376095
OBOL01211061
[OBOL] marine metagenome; Surface water
256
331
+
Phe
GAA
[ENA]
¢þ
>WENV180383876
OBOV01056825
[OBOV] marine metagenome; ENV:00002010
369
444
+
Phe
GAA
[ENA]
¢þ
>WENV180385526
OBPA01014988
[OBPA] marine metagenome; Sterile flask
482
407
-
Phe
GAA
[ENA]
¢þ
>WENV180390116
OBPK01027901
[OBPK] marine metagenome; Sterile flask
536
611
+
Phe
GAA
[ENA]
¢þ
>WENV180390820
OBPL01035846
[OBPL] marine metagenome; Sterivex filter
353
278
-
Phe
GAA
[ENA]
¢þ
>WENV180593857
OCOY01000721
[OCOY] marine metagenome; ENVO:00002010
650
575
-
Phe
GAA
[ENA]
¢þ
>WENV181126094
OEFV01004979
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
271
196
-
Phe
GAA
[ENA]
¢þ
>WENV182551807
OJCJ01000064
[OJCJ] seawater metagenome; Sea water
1385
1310
-
Phe
GAA
[ENA]
¢þ
>WENV182560993
OJDV01001591
[OJDV] seawater metagenome; Sea water
5692
5767
+
Phe
GAA
[ENA]
¢þ
>WENV182565699
OJEH01029783
[OJEH] seawater metagenome; Sea water
786
711
-
Phe
GAA
[ENA]
¢þ
>WENV183619492
OOFQ01010039
[OOFQ] marine metagenome; seawater
498
573
+
Phe
GAA
[ENA]
¢þ
>WENV170605944
FUWD010569758
[FUWD] metagenome; unknown
37
112
+
Phe
GAA
[ENA]
¢þ
>WENV170780644
MAAB01010487
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6403
6328
-
Phe
GAA
[ENA]
¢þ
>WENV170782657
MAAC01011120
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
86462
86387
-
Phe
GAA
[ENA]
¢þ
>WENV170783068
MAAC01013473
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9737
9662
-
Phe
GAA
[ENA]
¢þ
>WENV170783321
MAAC01015780
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2868
2793
-
Phe
GAA
[ENA]
¢þ
>WENV170783618
MAAC01018254
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
51322
51247
-
Phe
GAA
[ENA]
¢þ
>WENV170823416
MDSY01057304
[MDSY] marine metagenome; seawater
7917
7842
-
Phe
GAA
[ENA]
¢þ
>C181109356
CP024956
Gammaproteobacteria
Pectobacterium atrosepticum 36A [CP024956]
1087624
1087549
-
Phe
GAA
-
¡û
>C181109358
CP024956
Gammaproteobacteria
Pectobacterium atrosepticum 36A [CP024956]
684027
683952
-
Phe
GAA
-
¡û
>C191049119
CP026980
Gammaproteobacteria
Pectobacterium parmentieri IFB5441 [CP026980]
3737475
3737550
+
Phe
GAA
-
¡û
>C191049154
CP026980
Gammaproteobacteria
Pectobacterium parmentieri IFB5441 [CP026980]
690395
690320
-
Phe
GAA
-
¡û
>C191051177
CP027260
Gammaproteobacteria
Pectobacterium parmentieri IFB5427 [CP027260]
3795153
3795228
+
Phe
GAA
-
¡û
>C191051213
CP027260
Gammaproteobacteria
Pectobacterium parmentieri IFB5427 [CP027260]
662540
662465
-
Phe
GAA
-
¡û
>C191122713
CP034276
Gammaproteobacteria
Pectobacterium versatile 14A [CP034276]
1123752
1123677
-
Phe
GAA
-
¡û
>C191122715
CP034276
Gammaproteobacteria
Pectobacterium versatile 14A [CP034276]
699024
698949
-
Phe
GAA
-
¡û
>W09110781
ABVX01000022
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliensis PBR1692 [ABVX]
50683
50608
-
Phe
GAA
[ENA]
¡û
>W09110804
ABVX01000068
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliensis PBR1692 [ABVX]
10851
10776
-
Phe
GAA
[ENA]
¡û
>W141814868
JQHJ01000001
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum [JQHJ]
701555
701480
-
Phe
GAA
[ENA]
¡û
>W141814891
JQHJ01000003
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum [JQHJ]
133821
133746
-
Phe
GAA
[ENA]
¡û
>W141814949
JQHK01000004
Gammaproteobacteria
Pectobacterium atrosepticum [JQHK]
141634
141709
+
Phe
GAA
[ENA]
¡û
>W141814978
JQHK01000012
Gammaproteobacteria
Pectobacterium atrosepticum [JQHK]
114460
114535
+
Phe
GAA
[ENA]
¡û
>W141821919
JQOE01000001
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [JQOE]
285521
285596
+
Phe
GAA
[ENA]
¡û
>W141821938
JQOE01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [JQOE]
592228
592303
+
Phe
GAA
[ENA]
¡û
>W1910802727
MTAH01000002
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum Q40 [MTAH]
574516
574591
+
Phe
GAA
[ENA]
¡û
>W1910802732
MTAH01000003
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum Q40 [MTAH]
242314
242389
+
Phe
GAA
[ENA]
¡û
>W1910825990
MWOH01000001
Gammaproteobacteria
Pectobacterium versatile Ecc71 [MWOH]
452712
452637
-
Phe
GAA
[ENA]
¡û
>W1910825992
MWOH01000001
Gammaproteobacteria
Pectobacterium versatile Ecc71 [MWOH]
17951
17876
-
Phe
GAA
[ENA]
¡û
>W1911630203
PSZH01000001
Gammaproteobacteria
Pectobacterium parmentieri IFB5597 [PSZH]
1023794
1023719
-
Phe
GAA
[ENA]
¡û
>W1911630224
PSZH01000003
Gammaproteobacteria
Pectobacterium parmentieri IFB5597 [PSZH]
2256758
2256833
+
Phe
GAA
[ENA]
¡û
>W1911654262
QDKH01000006
Gammaproteobacteria
Brenneria sp. CFCC 11842 [QDKH]
316937
317012
+
Phe
GAA
[ENA]
¡û
>W1911811868
QZDH01000010
Gammaproteobacteria
Pectobacterium carotovorum S1.15.11.2D [QZDH]
18068
17993
-
Phe
GAA
[ENA]
¡û
>W1911811873
QZDH01000033
Gammaproteobacteria
Pectobacterium carotovorum S1.15.11.2D [QZDH]
44253
44328
+
Phe
GAA
[ENA]
¡û
>W1911812034
QZDL01000027
Gammaproteobacteria
Pectobacterium versatile S4.16.03.3K [QZDL]
128403
128478
+
Phe
GAA
[ENA]
¡û
>W1911812041
QZDL01000065
Gammaproteobacteria
Pectobacterium versatile S4.16.03.3K [QZDL]
11905
11830
-
Phe
GAA
[ENA]
¡û
>W1911812093
QZDN01000007
Gammaproteobacteria
Dickeya dianthicola S4.16.03.P2.4 [QZDN]
66538
66463
-
Phe
GAA
[ENA]
¡û
>W1911812113
QZDN01000069
Gammaproteobacteria
Dickeya dianthicola S4.16.03.P2.4 [QZDN]
26349
26424
+
Phe
GAA
[ENA]
¡û
>W1810065153
PDVY01000002
Gammaproteobacteria
Pectobacterium versatile PB69 [PDVY]
209841
209916
+
Phe
GAA
[ENA]
¡û
>W1810065155
PDVY01000002
Gammaproteobacteria
Pectobacterium versatile PB69 [PDVY]
667699
667774
+
Phe
GAA
[ENA]
¡û
>W1810168098
PJJA01000004
Gammaproteobacteria
Pectobacterium carotovorum F164 [PJJA]
141693
141618
-
Phe
GAA
[ENA]
¡û
>W1810168112
PJJA01000015
Gammaproteobacteria
Pectobacterium carotovorum F164 [PJJA]
432
507
+
Phe
GAA
[ENA]
¡û
>W1810625499
QHJU01000005
Gammaproteobacteria
Pectobacterium aquaticum A104-S21-F16 [QHJU]
82060
82135
+
Phe
GAA
[ENA]
¡û
>W1810625546
QHJV01000003
Gammaproteobacteria
Pectobacterium aquaticum A101-S19-F16 [QHJV]
51428
51503
+
Phe
GAA
[ENA]
¡û
>C10110518
CP001790
Gammaproteobacteria
Pectobacterium parmentieri WPP163 [CP001790]
3755450
3755525
+
Phe
GAA
[Ensembl]
¡û
>C10110554
CP001790
Gammaproteobacteria
Pectobacterium parmentieri WPP163 [CP001790]
753429
753354
-
Phe
GAA
[Ensembl]
¡û
>W1511435656
JUJG01000002
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum YC D57 [JUJG]
428323
428248
-
Phe
GAA
[ENA]
¡û
>W1511435658
JUJG01000002
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum YC D57 [JUJG]
23928
23853
-
Phe
GAA
[ENA]
¡û
>W1511436044
JUJM01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC T3 [JUJM]
743811
743736
-
Phe
GAA
[ENA]
¡û
>W1511436046
JUJM01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC T3 [JUJM]
311986
311911
-
Phe
GAA
[ENA]
¡û
>W1511436379
JUJR01000001
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum BC T2 [JUJR]
429543
429468
-
Phe
GAA
[ENA]
¡û
>W1511436381
JUJR01000001
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum BC T2 [JUJR]
18161
18086
-
Phe
GAA
[ENA]
¡û
>W1511705426
LGRF01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense BD255 [LGRF]
705574
705499
-
Phe
GAA
[ENA]
¡û
>W1511705428
LGRF01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense BD255 [LGRF]
305130
305055
-
Phe
GAA
[ENA]
¡û
>C121012681
CP003415
Gammaproteobacteria
Pectobacterium parmentieri SCC3193 [CP003415]
3703167
3703242
+
Phe
GAA
-
¡û
>C121012717
CP003415
Gammaproteobacteria
Pectobacterium parmentieri SCC3193 [CP003415]
675411
675336
-
Phe
GAA
-
¡û
>W1610011643
AODU01000005
Gammaproteobacteria
Pectobacterium peruviense subsp. carotovorum UGC32 [AODU]
89392
89317
-
Phe
GAA
[ENA]
¡û
>C131006477
CP003776
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum PCC21 [CP003776]
1007478
1007403
-
Phe
GAA
[Ensembl]
¡û
>C131006479
CP003776
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum PCC21 [CP003776]
581507
581432
-
Phe
GAA
[Ensembl]
¡û
>W1610984034
LWEY01000978
Gammaproteobacteria
Oleiphilus sp. HI0043 [LWEY]
4238
4163
-
Phe
GAA
[ENA]
¡û
>W1610984220
LWFB01001566
Gammaproteobacteria
Oleiphilus sp. HI0050 [LWFB]
1209
1134
-
Phe
GAA
[ENA]
¡û
>W1610984447
LWFE01000765
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
6911
6986
+
Phe
GAA
[ENA]
¡û
>W1610984475
LWFE01001612
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
233
158
-
Phe
GAA
[ENA]
¡û
>W1610984757
LWFJ01001418
Gammaproteobacteria
Oleiphilus sp. HI0068 [LWFJ]
7355
7280
-
Phe
GAA
[ENA]
¡û
>W1610984815
LWFK01001463
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
48273
48348
+
Phe
GAA
[ENA]
¡û
>W1610984840
LWFK01002198
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
233
158
-
Phe
GAA
[ENA]
¡û
>W1610984938
LWFM01001342
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
2908
2983
+
Phe
GAA
[ENA]
¡û
>W1610985285
LWFS01001343
Gammaproteobacteria
Oleiphilus sp. HI0078 [LWFS]
2451
2376
-
Phe
GAA
[ENA]
¡û
>W1610985456
LWFV01002389
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
1740
1665
-
Phe
GAA
[ENA]
¡û
>W1610985637
LWFY01002834
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
1543
1468
-
Phe
GAA
[ENA]
¡û
>W1610985680
LWFZ01000873
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
9742
9817
+
Phe
GAA
[ENA]
¡û
>W1610985711
LWGA01000484
Gammaproteobacteria
Oleiphilus sp. HI0117 [LWGA]
4978
4903
-
Phe
GAA
[ENA]
¡û
>W1610986015
LWGE01001156
Gammaproteobacteria
Oleiphilus sp. HI0123 [LWGE]
6896
6821
-
Phe
GAA
[ENA]
¡û
>W1610986113
LWGG01000791
Gammaproteobacteria
Oleiphilus sp. HI0128 [LWGG]
3770
3695
-
Phe
GAA
[ENA]
¡û
>W1610986286
LWGJ01001218
Gammaproteobacteria
Oleiphilus sp. HI0132 [LWGJ]
819
744
-
Phe
GAA
[ENA]
¡û
>WENV078257
AAFZ01016211
Fossil microbial community from Whale Fall (Santa Cruz Basin)
102
177
+
Phe
GAA
[ENA]
>W1710011437
AODU01000005
Gammaproteobacteria
Pectobacterium peruviense subsp. carotovorum UGC32 [AODU]
89392
89317
-
Phe
GAA
[ENA]
¡û
>W1710585378
FQWI01000002
Gammaproteobacteria
Pectobacterium carotovorum [FQWI]
316784
316709
-
Phe
GAA
[ENA]
¡û
>W1710585390
FQWI01000003
Gammaproteobacteria
Pectobacterium carotovorum [FQWI]
133687
133612
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK