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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238019 (66 seq.)
>W1710809608
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
195140
195215
+
His
GTG
[ENA]
¡û
>W1711055046
LRUH01000026
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
7070
6995
-
His
GTG
[ENA]
¡û
>W1711088438
LSYX01000080
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
28011
28086
+
His
GTG
[ENA]
¡û
>W1711088485
LSYY01000123
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
7935
7860
-
His
GTG
[ENA]
¡û
>W1711258823
LYUV01000029
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
8174
8249
+
His
GTG
[ENA]
¡û
>W1711258857
LYUW01000028
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
8162
8237
+
His
GTG
[ENA]
¡û
>W1711258892
LYUX01000030
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
8162
8237
+
His
GTG
[ENA]
¡û
>W1711258928
LYUY01000044
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
5838
5913
+
His
GTG
[ENA]
¡û
>W1711466306
MJMG01000001
Alphaproteobacteria
Wolbachia pipientis [MJMG]
100505
100578
+
His
GTG
[ENA]
¡û
>W1711745715
MUJL01000097
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
4157
4082
-
His
GTG
[ENA]
¡û
>W1711745738
MUJM01000061
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
4501
4426
-
His
GTG
[ENA]
¡û
>W131052810
AMZJ01000047
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
18192
18117
-
His
GTG
[ENA]
¡û
>W131242635
CAOH01000076
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
7116
7041
-
His
GTG
[ENA]
¡û
>W131243119
CAOU02000033
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
6763
6688
-
His
GTG
[ENA]
¡û
>C026844
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
970753
970678
-
His
GTG
[Ensembl]
¡û
>w016808
AAQP01000206
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila willistoni of Drosophila willistoni TSC#14030-0811.24 [AAQP]
299
376
+
His
GTG
[ENA]
¡û
>w005419
AAGC01000033
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans [AAGC]
2859
2782
-
His
GTG
[ENA]
¡û
>w005404
AAGB01000030
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae [AAGB]
4624
4547
-
His
GTG
[ENA]
¡û
>W141065641
AQQE01000063
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
6361
6286
-
His
GTG
[ENA]
¡û
>WENV181405291
OGCD01000051
[OGCD] insect metagenome; haemolymph
8895
8820
-
His
GTG
[ENA]
¢þ
>WENV181406109
OGCF01000993
[OGCF] insect metagenome; haemolymph
449
524
+
His
GTG
[ENA]
¢þ
>W141145101
AWUH01000160
Alphaproteobacteria
Wolbachia endosymbiont of Glossina morsitans morsitans [AWUH]
181
106
-
His
GTG
[ENA]
¡û
>W141240232
CAGB01000136
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
7940
7865
-
His
GTG
[ENA]
¡û
>C08011422
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
707502
707430
-
His
GTG
[Ensembl]
¡û
>C181017562
CP015510
Alphaproteobacteria
Wolbachia endosymbiont of Folsomia candida Berlin [CP015510]
1723686
1723761
+
His
GTG
-
¡û
>C191074321
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
301006
301081
+
His
GTG
-
¡û
>C191123102
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
574662
574737
+
His
GTG
-
¡û
>C191123148
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
1126256
1126181
-
His
GTG
-
¡û
>C191123182
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
1126259
1126184
-
His
GTG
-
¡û
>C191188707
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
17660
17735
+
His
GTG
-
¡û
>W09113869
ABZA01000003
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
248546
248471
-
His
GTG
[ENA]
¡û
>W141812286
JQAM01000029
Alphaproteobacteria
Wolbachia pipientis [JQAM]
62464
62389
-
His
GTG
[ENA]
¡û
>W1910213461
FMKF01000027
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
1163
1238
+
His
GTG
[ENA]
¡û
>C09111274
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
1033598
1033523
-
His
GTG
[Ensembl]
¡û
>W1910753962
MKIF01000071
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
4668
4743
+
His
GTG
[ENA]
¡û
>W1910759042
MLZJ01000148
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
8271
8346
+
His
GTG
[ENA]
¡û
>W1910760289
MNCG01000148
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
8271
8346
+
His
GTG
[ENA]
¡û
>W1910794360
MRWX01000017
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
10351
10426
+
His
GTG
[ENA]
¡û
>W1910802366
MSYL01000247
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
1323
1398
+
His
GTG
[ENA]
¡û
>W1911239474
NSDR01000115
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
4728
4803
+
His
GTG
[ENA]
¡û
>W1911239497
NSDS01000069
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
21861
21936
+
His
GTG
[ENA]
¡û
>W1911239519
NSDT01000032
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
6357
6282
-
His
GTG
[ENA]
¡û
>W1911281119
NTHL01000069
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
7324
7249
-
His
GTG
[ENA]
¡û
>W1911412146
NWVH01000027
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
4612
4687
+
His
GTG
[ENA]
¡û
>W1911412171
NWVH01000115
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
705
630
-
His
GTG
[ENA]
¡û
>W1911412194
NWVI01000068
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
4747
4822
+
His
GTG
[ENA]
¡û
>W1911412224
NWVJ01000020
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVJ]
9360
9435
+
His
GTG
[ENA]
¡û
>W1911545117
OUNE01000093
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
7584
7509
-
His
GTG
[ENA]
¡û
>W1911545134
OUNF01000012
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus floccissimus WBAF (OUNF) of Aleurodicus floccissimus WBAF [OUNF]
2290
2365
+
His
GTG
[ENA]
¡û
>W1810758335
QPIP01000010
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
14249
14324
+
His
GTG
[ENA]
¡û
>C151001143
AP013028
Alphaproteobacteria
Wolbachia endosymbiont of Cimex lectularius wCle [AP013028]
687016
686941
-
His
GTG
[Ensembl]
¡û
>C151102211
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
1071493
1071568
+
His
GTG
[Ensembl]
¡û
>W1510562616
CTEH01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
206959
206884
-
His
GTG
[ENA]
¡û
>W1511183982
JMCJ01000960
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus of Dactylopius coccus wCoc1 [JMCJ]
399
324
-
His
GTG
[ENA]
¡û
>W1511536221
JYPC01000028
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
1100
1025
-
His
GTG
[ENA]
¡û
>W11185746
CACK01000121
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
9184
9259
+
His
GTG
[ENA]
¡û
>C131009135
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
404746
404671
-
His
GTG
[Ensembl]
¡û
>C131009160
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
1000139
1000064
-
His
GTG
[Ensembl]
¡û
>W1610673714
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
195140
195215
+
His
GTG
[ENA]
¡û
>W1610896092
LRUH01000026
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
7070
6995
-
His
GTG
[ENA]
¡û
>W1610922977
LSYX01000080
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
28011
28086
+
His
GTG
[ENA]
¡û
>W1610923024
LSYY01000123
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
7935
7860
-
His
GTG
[ENA]
¡û
>W1611021088
LYUV01000029
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
8174
8249
+
His
GTG
[ENA]
¡û
>W1611021122
LYUW01000028
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
8162
8237
+
His
GTG
[ENA]
¡û
>W1611021157
LYUX01000030
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
8162
8237
+
His
GTG
[ENA]
¡û
>W1611021193
LYUY01000044
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
5838
5913
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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