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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238068 (79 seq.)
>W1711377918
MDZH01000396
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
278
206
-
Met
CAT
[ENA]
¡û
>W1711603022
MOLN01000022
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
402
330
-
Met
CAT
[ENA]
¡û
>W1711772040
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
815578
815650
+
Met
CAT
[ENA]
¡û
>W1712017610
NETF01000110
Cyanobacteriota
unicellular cyanobacterium SU3 [NETF]
116912
116838
-
Met
CAT
[ENA]
¡û
>W131058310
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
2875058
2875131
+
Met
CAT
[ENA]
¡û
>W131063365
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1012802
1012730
-
Met
CAT
[ENA]
¡û
>W131087157
AOCI01000004
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
89064
88992
-
Met
CAT
[ENA]
¡û
>W131203773
ASZQ01000239
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
31177
31249
+
Met
CAT
[ENA]
¡û
>W131036446
ALVR01000004
Cyanobacteriota
Spirulina subsalsa PCC 9445 [ALVR]
88040
87968
-
Met
CAT
[ENA]
¡û
>W131166649
ARCP01000033
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
22630
22703
+
Met
CAT
[ENA]
¡û
>w023436
AAXW01000001
Cyanobacteriota
Crocosphaera chwakensis CCY0110 [AAXW]
163173
163096
-
Met
CAT
[ENA]
¡û
>C171112053
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
756144
756216
+
Met
CAT
-
¡û
>WENV180110679
OAPN01003466
[OAPN] marine metagenome; 2011
179
107
-
Ile2
CAT
[ENA]
¢þ
>WENV180275098
OBHS01006037
[OBHS] metagenome; freshwater sediment
176
248
+
Ile2
CAT
[ENA]
¢þ
>w003599
AADV02000002
Cyanobacteriota
Crocosphaera watsonii WH 8501 [AADV]
417912
417837
-
Met
CAT
[ENA]
¡û
>W141038558
ALVY01000195
Cyanobacteriota
Gloeocapsa sp. PCC 73106 [ALVY]
37393
37317
-
Met
CAT
[ENA]
¡û
>W141065561
AQPY01000370
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
4229
4301
+
Met
CAT
[ENA]
¡û
>W08008946
ABLR01000011
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
197789
197717
-
Met
CAT
[ENA]
¡û
>W08011506
ABVI01000010
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
202386
202314
-
Met
CAT
[ENA]
¡û
>W141231457
BAUB01000001
Cyanobacteriota
Picosynechococcus sp. NKBG15041c NKBG15041c [BAUB]
164286
164361
+
Met
CAT
[ENA]
¡û
>W141234742
BAWS01000003
Cyanobacteriota
Picosynechococcus sp. NKBG042902 NKBG 042902 [BAWS]
172821
172748
-
Met
CAT
[ENA]
¡û
>W141242359
CAIH01000043
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
322
250
-
Met
CAT
[ENA]
¡û
>W141242414
CAII01000431
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
4250
4322
+
Met
CAT
[ENA]
¡û
>W141242453
CAIJ01000314
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
532
604
+
Met
CAT
[ENA]
¡û
>W141242478
CAIK01000060
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
4226
4298
+
Met
CAT
[ENA]
¡û
>W141242521
CAIL01000065
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
6418
6490
+
Met
CAT
[ENA]
¡û
>W141242571
CAIM01000450
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
2437
2365
-
Met
CAT
[ENA]
¡û
>W141242591
CAIN01000059
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
291
219
-
Met
CAT
[ENA]
¡û
>W141242656
CAIO01000422
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
4972
4900
-
Met
CAT
[ENA]
¡û
>W141242691
CAIP01000227
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
4325
4397
+
Met
CAT
[ENA]
¡û
>W141242718
CAIQ01000166
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
15778
15850
+
Met
CAT
[ENA]
¡û
>W141247072
CAQM01000121
Cyanobacteriota
Crocosphaera watsonii WH 0401 [CAQM]
1682
1754
+
Met
CAT
[ENA]
¡û
>W141247143
CAQN01001263
Cyanobacteriota
Crocosphaera watsonii WH 0402 [CAQN]
1999
1927
-
Met
CAT
[ENA]
¡û
>WENV182557392
OJDI01020737
[OJDI] seawater metagenome; Sea water
320
393
+
Ile2
CAT
[ENA]
¢þ
>WENV182574977
OJFS01013747
[OJFS] seawater metagenome; Sea water
686
613
-
Ile2
CAT
[ENA]
¢þ
>C08006380
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
1346305
1346233
-
Met
CAT
[Ensembl]
¡û
>C08010875
CP000951
Cyanobacteriota
Picosynechococcus sp. PCC 7002 PCC 7002; ATCC 27264 [CP000951]
1251916
1251843
-
Met
CAT
[Ensembl]
¡û
>C08003985
CP000806
Cyanobacteriota
Crocosphaera subtropica ATCC 51142 [CP000806, CP000807]
1425748
1425674
-
Met
CAT
[Ensembl]
¡û
>WENV170232821
CEQI01100715
[CEQI] marine metagenome genome assembly TARA_076_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
20054
20129
+
Met
CAT
[ENA]
¢þ
>WENV170290909
CESA01064670
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
121012
120937
-
Met
CAT
[ENA]
¢þ
>WENV170336266
CESZ01206216
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2399
2474
+
Met
CAT
[ENA]
¢þ
>WENV170680642
LFEF01006723
[LFEF] freshwater metagenome; waterbloom
5458
5530
+
Met
CAT
[ENA]
¢þ
>WENV170828623
MDSY01153156
[MDSY] marine metagenome; seawater
20108
20183
+
Met
CAT
[ENA]
¢þ
>C181001758
AP017375
Cyanobacteriota
Stanieria sp. NIES-3757 [AP017375]
2830206
2830278
+
Met
CAT
-
¡û
>C181003881
AP017959
Cyanobacteriota
[Synechococcus] sp. NIES-970 [AP017959]
1330351
1330279
-
Met
CAT
-
¡û
>C181046170
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
3373271
3373343
+
Met
CAT
-
¡û
>C191007267
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
5175939
5175867
-
Met
CAT
-
¡û
>W141810163
JPSP01000008
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa thalassa isolate SIO64986 [JPSP]
40057
39983
-
Met
CAT
[ENA]
¡û
>W1910020355
BDSG01000053
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
16477
16549
+
Met
CAT
[ENA]
¡û
>W1910020393
BDSM01000024
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
96805
96733
-
Met
CAT
[ENA]
¡û
>W1910038678
BEIU01000030
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
8196
8124
-
Met
CAT
[ENA]
¡û
>W1910038708
BEIV01000050
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
29123
29051
-
Met
CAT
[ENA]
¡û
>W1910067346
BEYQ01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
234682
234610
-
Met
CAT
[ENA]
¡û
>W1910067398
BFAC01000004
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
276885
276813
-
Met
CAT
[ENA]
¡û
>W1910142350
BIFY01000173
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
5402
5474
+
Met
CAT
[ENA]
¡û
>W1910665584
MCIH01000205
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
603
531
-
Met
CAT
[ENA]
¡û
>W1910695512
MDVL01000935
Cyanobacteriota
Euhalothece sp. KZN 001 KZN 001 [MDVL]
672
600
-
Met
CAT
[ENA]
¡û
>W1910768675
MOLZ01000077
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
6090
6018
-
Met
CAT
[ENA]
¡û
>C09103647
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
1274576
1274504
-
Met
CAT
[Ensembl]
¡û
>W1810047912
PCGE01000062
Cyanobacteriota
Synechococcus sp. BDU 130192 [PCGE]
62926
62999
+
Met
CAT
[ENA]
¡û
>C151080696
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
3506586
3506658
+
Met
CAT
-
¡û
>W1510013642
BBPA01000070
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
189279
189351
+
Met
CAT
[ENA]
¡û
>C10104739
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
1275438
1275366
-
Met
CAT
[Ensembl]
¡û
>C10114712
CP001842
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa isolate ALOHA [CP001842]
1112018
1112093
+
Met
CAT
[Ensembl]
¡û
>C161064007
CP013998
Cyanobacteriota
Picosynechococcus sp. PCC 73109 [CP013998]
1278551
1278478
-
Met
CAT
-
¡û
>C161097305
CP016474
Cyanobacteriota
Picosynechococcus sp. PCC 7003 [CP016474]
1389490
1389563
+
Met
CAT
[Ensembl]
¡û
>C161097372
CP016477
Cyanobacteriota
Picosynechococcus sp. PCC 7117 [CP016477]
1272305
1272232
-
Met
CAT
[Ensembl]
¡û
>C161097413
CP016483
Cyanobacteriota
Picosynechococcus sp. PCC 8807 [CP016483]
1261098
1261025
-
Met
CAT
-
¡û
>C131010357
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
1110051
1110123
+
Met
CAT
[Ensembl]
¡û
>C131005028
CP003653
Cyanobacteriota
Stanieria cyanosphaera PCC 7437 [CP003653]
3134246
3134171
-
Met
CAT
[Ensembl]
¡û
>C131010316
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
6095794
6095722
-
Met
CAT
[Ensembl]
¡û
>W1610550815
JXYX01000002
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
365998
365926
-
Met
CAT
[ENA]
¡û
>W1710004726
AJHB01000421
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
118
46
-
Met
CAT
[ENA]
¡û
>W1710005074
AJUS01000461
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
118
46
-
Met
CAT
[ENA]
¡û
>W1710005110
AJUT01000425
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
118
46
-
Met
CAT
[ENA]
¡û
>W1710005147
AJUU01000425
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
120
48
-
Met
CAT
[ENA]
¡û
>W1710608971
FXBO01000001
Cyanobacteriota
Picosynechococcus sp. OG1 OG1 [FXBO]
524667
524740
+
Met
CAT
[ENA]
¡û
>W1710609620
FXWN01000001
Cyanobacteriota
Synechococcus sp. 7002 [FXWN]
2983947
2984020
+
Met
CAT
[ENA]
¡û
>W1710660692
JXYX01000002
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
365998
365926
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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