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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238271 (34 seq.)
>A171000113
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1143355
1143280
-
Asn
GTT
-
¡û
>A171000914
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1519564
1519489
-
Asn
GTT
-
¡û
>A171002048
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
300008
299935
-
Asn
GTT
-
¡û
>A171002246
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2209551
2209624
+
Asn
GTT
-
¡û
>A171004016
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
339522
339449
-
Asn
GTT
-
¡û
>A171007312
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1715935
1716009
+
Asn
GTT
-
¡û
>A171007342
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
964706
964779
+
Asn
GTT
-
¡û
>A171007394
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2096474
2096547
+
Asn
GTT
-
¡û
>A171007662
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2130979
2131052
+
Asn
GTT
-
¡û
>A171007718
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1530256
1530181
-
Asn
GTT
-
¡û
>WENV180036855
FVAA010385382
[FVAA] soil metagenome; Soil
75
1
-
Asn
GTT
[ENA]
¢þ
>WENV181230055
OFEK01000230
[OFEK] activated sludge metagenome; Anaerobic digester
75349
75422
+
Asn
GTT
[ENA]
¢þ
>WENV181230058
OFEK01000232
[OFEK] activated sludge metagenome; Anaerobic digester
73343
73270
-
Asn
GTT
[ENA]
¢þ
>WENV181416915
OGCL01179986
[OGCL] hot springs metagenome; Hot spring water
560
485
-
Asn
GTT
[ENA]
¢þ
>WENV170021460
BBPF01012944
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2132
2059
-
Asn
GTT
[ENA]
¢þ
>At1681
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1160496
1160424
-
Asn
GTT
[Ensembl]
¡û
>WENV170671060
LAHU01010551
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
4013
3939
-
Asn
GTT
[ENA]
¢þ
>WENV170671563
LAHU01087300
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
606
679
+
Asn
GTT
[ENA]
¢þ
>WENV170675827
LDZQ01000830
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1492
1416
-
Asn
GTT
[ENA]
¢þ
>WENV170675905
LDZQ01001231
[LDZQ] terrestrial metagenome; oil reservoir sample I2
6532
6456
-
Asn
GTT
[ENA]
¢þ
>WENV170676704
LDZS01002002
[LDZS] terrestrial metagenome; oil reservoir sample K3
2328
2252
-
Asn
GTT
[ENA]
¢þ
>WENV170677318
LDZT01004936
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4338
4413
+
Asn
GTT
[ENA]
¢þ
>WENV170678288
LDZT01013141
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2671
2745
+
Asn
GTT
[ENA]
¢þ
>WENV170691196
LFRM01384362
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
67321
67245
-
Asn
GTT
[ENA]
¢þ
>WENV170972555
MTKX01034777
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
713
640
-
Asn
GTT
[ENA]
¢þ
>WENV170976346
MTKZ01006900
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2140
2213
+
Asn
GTT
[ENA]
¢þ
>W1910575094
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2145101
2145174
+
Asn
GTT
[ENA]
¡û
>W1911690443
QLOE01000002
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
163265
163190
-
Asn
GTT
[ENA]
¡û
>W1911722780
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
94218
94293
+
Asn
GTT
[ENA]
¡û
>W1610006212
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13922
13849
-
Asn
GTT
[ENA]
¡û
>W1610011020
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
50342
50269
-
Asn
GTT
[ENA]
¡û
>W1610049150
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
95784
95859
+
Asn
GTT
[ENA]
¡û
>W1610612484
LGEU01000045
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
6532
6456
-
Asn
GTT
[ENA]
¡û
>W1610613872
LGGL01000043
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
4338
4413
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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