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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238274 (22 seq.)
>A171004011
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
798467
798395
-
Thr
GGT
-
¡û
>A171007329
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1537221
1537149
-
Thr
GGT
-
¡û
>A171007378
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
747518
747446
-
Thr
GGT
-
¡û
>A171007412
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
1893639
1893567
-
Thr
GGT
-
¡û
>A171007676
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
1860078
1860006
-
Thr
GGT
-
¡û
>WENV181230299
OFEK01000590
[OFEK] activated sludge metagenome; Anaerobic digester
25563
25491
-
Thr
GGT
[ENA]
¢þ
>WENV170021471
BBPF01013285
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
620
692
+
Thr
GGT
[ENA]
¢þ
>WENV170022072
BBPG01015153
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
661
589
-
Thr
GGT
[ENA]
¢þ
>WENV170671565
LAHU01087301
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
3432
3360
-
Thr
GGT
[ENA]
¢þ
>WENV170677307
LDZT01004899
[LDZT] terrestrial metagenome; oil reservoir sample SB1
11446
11374
-
Thr
GGT
[ENA]
¢þ
>WENV170972046
MTKX01018641
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
228
156
-
Thr
GGT
[ENA]
¢þ
>WENV170976644
MTKZ01010217
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
29384
29456
+
Thr
GGT
[ENA]
¢þ
>W1910583621
JXMW01000001
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 DH1 [JXMW]
32312
32240
-
Thr
GGT
[ENA]
¡û
>W1910938893
NIZT01000025
Euryarchaeota
Candidatus Methanobinarius endosymbioticus NOE [NIZT]
29120
29048
-
Thr
GGT
[ENA]
¡û
>SRA1005315
SRR006907.170483
metagenomic water samples (SRP000427)
180
108
-
Thr
GGT
[SRA]
>W1610006224
AMGN01000005
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
47716
47788
+
Thr
GGT
[ENA]
¡û
>W1610011019
AMPO01000005
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
149718
149790
+
Thr
GGT
[ENA]
¡û
>W1610049164
BBES01000013
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
20218
20290
+
Thr
GGT
[ENA]
¡û
>W1610049186
BBET01000009
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
19861
19789
-
Thr
GGT
[ENA]
¡û
>W1610083219
CBVX010000001
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
334253
334181
-
Thr
GGT
[ENA]
¡û
>W1610613861
LGGL01000006
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
11446
11374
-
Thr
GGT
[ENA]
¡û
>W1610990772
LWMW01000117
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
36489
36417
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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